IntaRNA is a program for the fast and accurate prediction of
interactions between two RNA molecules. It has been designed to
predict mRNA target sites for given non-coding RNAs (ncRNAs) like
eukaryotic microRNAs (miRNAs) or bacterial small RNAs (sRNAs), but
it can also be used to predict other types of RNA-RNA interactions.
Precomputed results for Enterobacteria:
ChiX,
CyaR,
FnrS,
GcvB,
MicC,
RyhB,
Spot42,
and for Non-enteric bacteria:
LhrA2,
PrrF1,
Yfr1.
Note, in contrast to this server, the stand-alone IntaRNA software
does not limit the problem size, provides enhanced functionality, and
offers a batch processing-friendly command line interface. For this reasons,
you might consider to install IntaRNA locally
For articles describing the tool and webserver refer to the reference section below. Please
cite us when using our tools.
For more information check the help page.
