Freiburg RNA Tools
IntaRNA - RNA-RNA interaction
BIF
IFF
IntaRNA

IntaRNA - RNA-RNA interaction

IntaRNA is a program for the fast and accurate prediction of interactions between two RNA molecules. It has been designed to predict mRNA target sites for given non-coding RNAs (ncRNAs) like eukaryotic microRNAs (miRNAs) or bacterial small RNAs (sRNAs), but it can also be used to predict other types of RNA-RNA interactions.

Precomputed results for Enterobacteria: ChiX, CyaR, FnrS, GcvB, MicC, RyhB, Spot42, and for Non-enteric bacteria: LhrA2, PrrF1, Yfr1.

For articles describing the tool refer to the reference section below. Please cite us when using our tools.
For more information check the help page.

Try IntaRNA with these examples:

Sequence Parameters

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When using IntaRNA please cite :

Results are computed with IntaRNA version 1.2.5 (wrapper 1.0.7.1) linking Vienna RNA package 1.8.4