Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 4554580

Input and runtime details for job 4554580 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 4554580 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:33:59 CET 2014
?Processing Started@ Mon Oct 27 22:12:21 CET 2014
?CopraRNA Finished & Post-Processing@ Tue Oct 28 01:29:22 CET 2014
?Post-Processing Finished@ Tue Oct 28 01:29:23 CET 2014
?Job Completed@ Tue Oct 28 01:29:48 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=4554580&toolName=CopraRNA ( 30 days expiry )

The job description you specified

RybB

Output download complete results [zip]

Downloadable files

[csv]
[txt]
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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 4.239e-06 0.01109 b2314 dedD -24.46 0.000002 176 -- 205 1 -- 30 membrane-anchored periplasmic protein involved in septation   0
2 1.128e-05 0.01369 b0081 mraZ -16.78 0.007782 172 -- 200 1 -- 32 RsmH methytransferase inhibitor   0
3 1.568e-05 0.01427 b2215 ompC -13.60 0.050968 133 -- 159 1 -- 28 outer membrane porin protein C b0929 b0241 b1377 0
4 0.0001216 0.08851 b4201 priB -15.48 0.017809 176 -- 193 6 -- 26 primosomal protein N   0
5 0.0001731 0.09761 b4255 rraB -15.86 0.014066 180 -- 205 1 -- 23 protein inhibitor of RNase E   0
6 0.0001877 0.09761 b3752 rbsK -20.24 0.000499 140 -- 155 1 -- 17 ribokinase   0
7 0.0002974 0.1354 b3733 atpG -14.92 0.024717 183 -- 205 1 -- 22 F1 sector of membrane-bound ATP synthase gamma subunit   0
8 0.0005821 0.2355 b1247 oppF -10.33 0.223729 264 -- 288 1 -- 22 oligopeptide transporter subunit   0
9 0.001004 0.3657 b3731 atpC -14.46 0.032052 85 -- 99 7 -- 22 F1 sector of membrane-bound ATP synthase epsilon subunit   0
10 0.00129 0.4126 b2231 gyrA -15.24 0.020501 230 -- 249 7 -- 25 DNA gyrase (type II topoisomerase) subunit A   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1