41 |
0.002071 |
0.1648 |
b0992 |
yccM |
-9.88 |
0.287125 |
161 -- 167 |
1 -- 7 |
putative 4Fe-4S membrane protein |
|
_____________160_____168\n_____________|_______|\n5'-AUC...UAGAA_______AUUUG...AAG-3'\n______________UAGUGGC\n______________:||||||\n______________GUCACCG\n3'-UUU...UUUUC_______-5'\n_____________|______|\n_____________8______1\n |
161 -- 167 |
1 -- 7 |
-11.7646 kcal/mol |
0.660682 kcal/mol |
1.22779 kcal/mol |
160 168@LB@ | |@LB@5'-AUC...UAGAA AUUUG...AAG-3'@LB@ UAGUGGC@LB@ :||||||@LB@ GUCACCG@LB@3'-UUU...UUUUC -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -11.7646 kcal/mol@LB@Unfolding Energy - mRNA 0.660682 kcal/mol@LB@Unfolding Energy - sRNA 1.22779 kcal/mol@LB@@LB@Position - mRNA 161 -- 167@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 1 -- 7@LB@ |
42 |
0.002133 |
0.1648 |
b0968 |
yccX |
-12.44 |
0.101807 |
184 -- 198 |
5 -- 23 |
weak acylphosphatase |
|
_____________183_________________199\n_____________|___________________|\n5'-GGC...AUUAA___________________CAAUG...CCG-3'\n______________GGAUA____AGGAGAGCAG\n______________|||:|____||:|:|||||\n______________CCUGU____UCUUUUCGUC\n3'-UUU...UUACC_____AGUU__________ACCG-5'\n_____________|___________________|\n_____________24__________________4\n |
192 -- 198 |
5 -- 11 |
-17.1825 kcal/mol |
3.17176 kcal/mol |
1.57523 kcal/mol |
183 199@LB@ | |@LB@5'-GGC...AUUAA CAAUG...CCG-3'@LB@ GGAUA AGGAGAGCAG@LB@ |||:| ||:|:|||||@LB@ CCUGU UCUUUUCGUC@LB@3'-UUU...UUACC AGUU ACCG-5'@LB@ | |@LB@ 24 4@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -17.1825 kcal/mol@LB@Unfolding Energy - mRNA 3.17176 kcal/mol@LB@Unfolding Energy - sRNA 1.57523 kcal/mol@LB@@LB@Position - mRNA 184 -- 198@LB@Position - sRNA 5 -- 23@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 5 -- 11@LB@ |
43 |
0.00215 |
0.1648 |
b4268 |
idnK |
-13.73 |
0.054596 |
180 -- 268 |
1 -- 79 |
D-gluconate kinase thermosensitive |
b3437 |
_____________179______________________________________________________________________________________________269\n_____________|________________________________________________________________________________________________|\n5'-AGG...AGGUA___U______GGA______________________U_AAAGCUUUAUU_________GU____G_______UAAA_______UUGGU____A____UGCCG...AUG-3'\n______________AGA_GAUUCA___GAUUUU______AAAUGGCGGG_G___________UUGAUGGGC__UUCA_GGAGUGG____ACAUUAA_____AGCA__GGU\n______________|:|_:|::||___:|::||______||||||||||_|___________|||||||||__|:||_::|:|||____||||:||_____||||__||:\n______________UUU_UUGGGU___UUGGAA______UUUACCGCCC_C___________AACUACCCG__AGGU_UUUUACC____UGUAGUU_____UCGU__CCG\n___________3'-___U______AG_______CUUGGC______________________________________G_______CC_________UCUUU____CA___-5'\n______________|______________________________________________________________________________________________|\n______________79_____________________________________________________________________________________________1\n |
249 -- 255 |
15 -- 21 |
-57.0668 kcal/mol |
16.9855 kcal/mol |
26.3515 kcal/mol |
179 269@LB@ | |@LB@5'-AGG...AGGUA U GGA U AAAGCUUUAUU GU G UAAA UUGGU A UGCCG...AUG-3'@LB@ AGA GAUUCA GAUUUU AAAUGGCGGG G UUGAUGGGC UUCA GGAGUGG ACAUUAA AGCA GGU@LB@ |:| :|::|| :|::|| |||||||||| | ||||||||| |:|| ::|:||| ||||:|| |||| ||:@LB@ UUU UUGGGU UUGGAA UUUACCGCCC C AACUACCCG AGGU UUUUACC UGUAGUU UCGU CCG@LB@ 3'- U AG CUUGGC G CC UCUUU CA -5'@LB@ | |@LB@ 79 1@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -57.0668 kcal/mol@LB@Unfolding Energy - mRNA 16.9855 kcal/mol@LB@Unfolding Energy - sRNA 26.3515 kcal/mol@LB@@LB@Position - mRNA 180 -- 268@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 15 -- 21@LB@ |
44 |
0.002166 |
0.1648 |
b3349 |
slyD |
-19.18 |
0.001707 |
20 -- 41 |
5 -- 23 |
FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) |
|
_____________19_____________________42\n_____________|______________________|\n5'-UGU...AGUGC__________UGC_________ACAAA...ACU-3'\n______________GGACAUCAGA___GAGAAGCAG\n______________||||||||:|___||:||||||\n______________CCUGUAGUUU___CUUUUCGUC\n3'-UUU...UUACC______________________ACCG-5'\n_____________|______________________|\n_____________24_____________________4\n |
35 -- 41 |
5 -- 11 |
-25.7728 kcal/mol |
5.01574 kcal/mol |
1.57523 kcal/mol |
19 42@LB@ | |@LB@5'-UGU...AGUGC UGC ACAAA...ACU-3'@LB@ GGACAUCAGA GAGAAGCAG@LB@ ||||||||:| ||:||||||@LB@ CCUGUAGUUU CUUUUCGUC@LB@3'-UUU...UUACC ACCG-5'@LB@ | |@LB@ 24 4@LB@@LB@@LB@Energy -19.18 kcal/mol@LB@Hybridization Energy -25.7728 kcal/mol@LB@Unfolding Energy - mRNA 5.01574 kcal/mol@LB@Unfolding Energy - sRNA 1.57523 kcal/mol@LB@@LB@Position - mRNA 20 -- 41@LB@Position - sRNA 5 -- 23@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 5 -- 11@LB@ |
45 |
0.002187 |
0.1648 |
b3391 |
hofQ |
-14.99 |
0.027914 |
2 -- 20 |
1 -- 20 |
DNA catabolic putative fimbrial transporter |
|
_____________1____________________21\n_____________|____________________|\n__________5'-C__________U_________GAGGC...UAG-3'\n______________UAUCAGGGGA_GGUAG_GGC\n______________:||||::|:|_:|:||_|||\n______________GUAGUUUCUU_UCGUC_CCG\n3'-UUU...CCCCU__________U_____A___-5'\n_____________|___________________|\n_____________21__________________1\n |
5 -- 11 |
11 -- 17 |
-22.4478 kcal/mol |
5.99969 kcal/mol |
1.45855 kcal/mol |
1 21@LB@ | |@LB@ 5'-C U GAGGC...UAG-3'@LB@ UAUCAGGGGA GGUAG GGC@LB@ :||||::|:| :|:|| |||@LB@ GUAGUUUCUU UCGUC CCG@LB@3'-UUU...CCCCU U A -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -22.4478 kcal/mol@LB@Unfolding Energy - mRNA 5.99969 kcal/mol@LB@Unfolding Energy - sRNA 1.45855 kcal/mol@LB@@LB@Position - mRNA 2 -- 20@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 11 -- 17@LB@ |
46 |
0.002205 |
0.1648 |
b1662 |
ribC |
-17.71 |
0.005126 |
34 -- 61 |
2 -- 29 |
riboflavin synthase alpha subunit |
|
_____________33_____________________________62\n_____________|______________________________|\n5'-UUU...CGCCU_______CA___A_____A___________GAAAU...UGG-3'\n______________GAAUGGG__GCA__AAAG_AGAAGCAG_GG\n______________:||||||__:||__||||_|:||||||_||\n______________UUUACCC__UGU__UUUC_UUUUCGUC_CC\n3'-UUU...GGUGU_______C____AG_____________A__G-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
53 -- 59 |
5 -- 11 |
-25.8778 kcal/mol |
5.65259 kcal/mol |
2.51906 kcal/mol |
33 62@LB@ | |@LB@5'-UUU...CGCCU CA A A GAAAU...UGG-3'@LB@ GAAUGGG GCA AAAG AGAAGCAG GG@LB@ :|||||| :|| |||| |:|||||| ||@LB@ UUUACCC UGU UUUC UUUUCGUC CC@LB@3'-UUU...GGUGU C AG A G-5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -17.71 kcal/mol@LB@Hybridization Energy -25.8778 kcal/mol@LB@Unfolding Energy - mRNA 5.65259 kcal/mol@LB@Unfolding Energy - sRNA 2.51906 kcal/mol@LB@@LB@Position - mRNA 34 -- 61@LB@Position - sRNA 2 -- 29@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 5 -- 11@LB@ |
47 |
0.002271 |
0.1648 |
b3169 |
nusA |
-13.61 |
0.058009 |
55 -- 79 |
4 -- 28 |
transcription termination/antitermination L factor |
|
_____________54__________________________80\n_____________|___________________________|\n5'-UUG...UCGUA_____CA________UC__________AGACG...CAG-3'\n______________AAUGG__GGGCGUUA____AAAGCGGU\n______________|||||__||:|:|:|____|||||:||\n______________UUACC__CCUGUAGU____UUUCGUCA\n3'-UUU...GUGUU_______________UUCU________CCG-5'\n_____________|___________________________|\n_____________29__________________________3\n |
73 -- 79 |
4 -- 10 |
-21.8237 kcal/mol |
5.69952 kcal/mol |
2.51457 kcal/mol |
54 80@LB@ | |@LB@5'-UUG...UCGUA CA UC AGACG...CAG-3'@LB@ AAUGG GGGCGUUA AAAGCGGU@LB@ ||||| ||:|:|:| |||||:||@LB@ UUACC CCUGUAGU UUUCGUCA@LB@3'-UUU...GUGUU UUCU CCG-5'@LB@ | |@LB@ 29 3@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -21.8237 kcal/mol@LB@Unfolding Energy - mRNA 5.69952 kcal/mol@LB@Unfolding Energy - sRNA 2.51457 kcal/mol@LB@@LB@Position - mRNA 55 -- 79@LB@Position - sRNA 4 -- 28@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 4 -- 10@LB@ |
48 |
0.002302 |
0.1648 |
b3460 |
livJ |
-15.11 |
0.026091 |
183 -- 229 |
1 -- 30 |
branched-chain amino acid ABC transporter periplasmic binding protein |
|
_____________182_____________________________________________230\n_____________|_______________________________________________|\n5'-AAU...CCAGA___________UC___GGAUGAACAUAA____U______UUAC____AGGAU...CAA-3'\n______________AGAAUGGGGAU__UCA____________AGGG_AAAGCG____UGGC\n______________|:||||||||:__|||____________|:|:_|||||:____||||\n______________UUUUACCCCUG__AGU____________UUCU_UUUCGU____ACCG\n3'-UUU...AGGUG___________U___________________________C_______-5'\n_____________|______________________________________________|\n_____________31_____________________________________________1\n |
187 -- 193 |
20 -- 26 |
-27.0033 kcal/mol |
9.37443 kcal/mol |
2.51911 kcal/mol |
182 230@LB@ | |@LB@5'-AAU...CCAGA UC GGAUGAACAUAA U UUAC AGGAU...CAA-3'@LB@ AGAAUGGGGAU UCA AGGG AAAGCG UGGC@LB@ |:||||||||: ||| |:|: |||||: ||||@LB@ UUUUACCCCUG AGU UUCU UUUCGU ACCG@LB@3'-UUU...AGGUG U C -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -15.11 kcal/mol@LB@Hybridization Energy -27.0033 kcal/mol@LB@Unfolding Energy - mRNA 9.37443 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 183 -- 229@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 20 -- 26@LB@ |
49 |
0.002324 |
0.1648 |
b1119 |
nagK |
-12.21 |
0.112661 |
180 -- 199 |
1 -- 21 |
N-acetyl-D-glucosamine kinase |
|
_____________179___________________200\n_____________|_____________________|\n5'-UCA...GCAGU________AC____G__C___AAUGU...GUG-3'\n______________ACAUUAAA___AAG_AG_GGC\n______________||||:|||___|||_||_|||\n______________UGUAGUUU___UUC_UC_CCG\n3'-UUU...ACCCC________CUU___G__A___-5'\n_____________|____________________|\n_____________22___________________1\n |
181 -- 187 |
14 -- 20 |
-16.408 kcal/mol |
2.6857 kcal/mol |
1.51103 kcal/mol |
179 200@LB@ | |@LB@5'-UCA...GCAGU AC G C AAUGU...GUG-3'@LB@ ACAUUAAA AAG AG GGC@LB@ ||||:||| ||| || |||@LB@ UGUAGUUU UUC UC CCG@LB@3'-UUU...ACCCC CUU G A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -12.21 kcal/mol@LB@Hybridization Energy -16.408 kcal/mol@LB@Unfolding Energy - mRNA 2.6857 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 180 -- 199@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 14 -- 20@LB@ |
50 |
0.002349 |
0.1648 |
b2040 |
rfbD |
-20.63 |
0.000491 |
127 -- 157 |
3 -- 32 |
dTDP-L-rhamnose synthase NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit |
|
_____________126______________________________158\n_____________|________________________________|\n5'-GAU...CCAAU__________UU____AUGU____________CCUAU...CUA-3'\n______________ACAAAAUGGG__GAUA_____GAAAAGUGGUG\n______________||||||||||__||:|_____||||||::|||\n______________UGUUUUACCC__CUGU_____CUUUUCGUCAC\n3'-UUU...CGAGG________________AGUUU___________CG-5'\n_____________|________________________________|\n_____________33_______________________________2\n |
151 -- 157 |
3 -- 9 |
-27.2371 kcal/mol |
4.0691 kcal/mol |
2.53925 kcal/mol |
126 158@LB@ | |@LB@5'-GAU...CCAAU UU AUGU CCUAU...CUA-3'@LB@ ACAAAAUGGG GAUA GAAAAGUGGUG@LB@ |||||||||| ||:| ||||||::|||@LB@ UGUUUUACCC CUGU CUUUUCGUCAC@LB@3'-UUU...CGAGG AGUUU CG-5'@LB@ | |@LB@ 33 2@LB@@LB@@LB@Energy -20.63 kcal/mol@LB@Hybridization Energy -27.2371 kcal/mol@LB@Unfolding Energy - mRNA 4.0691 kcal/mol@LB@Unfolding Energy - sRNA 2.53925 kcal/mol@LB@@LB@Position - mRNA 127 -- 157@LB@Position - sRNA 3 -- 32@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 3 -- 9@LB@ |