| 161 |
0.01187 |
0.2504 |
b0093 |
ftsQ |
-14.15 |
0.043981 |
32 -- 43 |
18 -- 29 |
divisome assembly protein membrane anchored protein involved in growth of wall at septum |
|
_____________31___________44\n_____________|____________|\n5'-GCU...GCAAA____________AUUGA...CCG-3'\n______________GGAUGGGGACGU\n______________::||||||||:|\n______________UUUACCCCUGUA\n3'-UUU...GGUGU____________GUUUC...CCG-5'\n_____________|____________|\n_____________30___________17\n |
37 -- 43 |
18 -- 24 |
-18.9266 kcal/mol |
4.11166 kcal/mol |
0.665542 kcal/mol |
31 44@LB@ | |@LB@5'-GCU...GCAAA AUUGA...CCG-3'@LB@ GGAUGGGGACGU@LB@ ::||||||||:|@LB@ UUUACCCCUGUA@LB@3'-UUU...GGUGU GUUUC...CCG-5'@LB@ | |@LB@ 30 17@LB@@LB@@LB@Energy -14.15 kcal/mol@LB@Hybridization Energy -18.9266 kcal/mol@LB@Unfolding Energy - mRNA 4.11166 kcal/mol@LB@Unfolding Energy - sRNA 0.665542 kcal/mol@LB@@LB@Position - mRNA 32 -- 43@LB@Position - sRNA 18 -- 29@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 162 |
0.012 |
0.2504 |
b2079 |
baeR |
-15.58 |
0.019969 |
182 -- 201 |
6 -- 24 |
response regulator in two-component regulatory system with BaeS |
|
_____________181__________________202\n_____________|____________________|\n5'-CAG...GGAAC_____UUA____________UGACC...CGA-3'\n______________GGGAU___CAGAGAGAAGUA\n______________||||:___||:|||:|||:|\n______________CCCUG___GUUUCUUUUCGU\n3'-UUU...UUUAC_____UA_____________CACCG-5'\n_____________|____________________|\n_____________25___________________5\n |
195 -- 201 |
6 -- 12 |
-20.602 kcal/mol |
4.32458 kcal/mol |
0.702143 kcal/mol |
181 202@LB@ | |@LB@5'-CAG...GGAAC UUA UGACC...CGA-3'@LB@ GGGAU CAGAGAGAAGUA@LB@ ||||: ||:|||:|||:|@LB@ CCCUG GUUUCUUUUCGU@LB@3'-UUU...UUUAC UA CACCG-5'@LB@ | |@LB@ 25 5@LB@@LB@@LB@Energy -15.58 kcal/mol@LB@Hybridization Energy -20.602 kcal/mol@LB@Unfolding Energy - mRNA 4.32458 kcal/mol@LB@Unfolding Energy - sRNA 0.702143 kcal/mol@LB@@LB@Position - mRNA 182 -- 201@LB@Position - sRNA 6 -- 24@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 163 |
0.01202 |
0.2504 |
b1482 |
osmC |
-10.53 |
0.225653 |
203 -- 226 |
1 -- 22 |
lipoyl-dependent Cys-based peroxidase hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin |
|
_____________202_______________________227\n_____________|_________________________|\n5'-UAG...ACAAU___A___CAU_________CA____ACACU...CGU-3'\n______________GAC_AUC___AAGAAAGGU___GGC\n______________|||_|||___||||||:|:___|||\n______________CUG_UAG___UUCUUUUCG___CCG\n3'-UUU...UACCC_______U___________UCA___-5'\n_____________|________________________|\n_____________23_______________________1\n |
215 -- 221 |
7 -- 13 |
-17.1921 kcal/mol |
5.11752 kcal/mol |
1.54023 kcal/mol |
202 227@LB@ | |@LB@5'-UAG...ACAAU A CAU CA ACACU...CGU-3'@LB@ GAC AUC AAGAAAGGU GGC@LB@ ||| ||| ||||||:|: |||@LB@ CUG UAG UUCUUUUCG CCG@LB@3'-UUU...UACCC U UCA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -17.1921 kcal/mol@LB@Unfolding Energy - mRNA 5.11752 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 203 -- 226@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 164 |
0.01206 |
0.2504 |
b0882 |
clpA |
-9.12 |
0.369525 |
95 -- 107 |
48 -- 60 |
ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity |
|
_____________94____________108\n_____________|_____________|\n5'-UUU...GCAGA____A________AUGGU...CGC-3'\n______________AACC_AAGUGGCG\n______________||||_||:|||||\n______________UUGG_UUUACCGC\n3'-UUU...GGAAC____C________CCCAA...CCG-5'\n_____________|_____________|\n_____________61____________47\n |
101 -- 107 |
48 -- 54 |
-16.8445 kcal/mol |
3.76103 kcal/mol |
3.96136 kcal/mol |
94 108@LB@ | |@LB@5'-UUU...GCAGA A AUGGU...CGC-3'@LB@ AACC AAGUGGCG@LB@ |||| ||:|||||@LB@ UUGG UUUACCGC@LB@3'-UUU...GGAAC C CCCAA...CCG-5'@LB@ | |@LB@ 61 47@LB@@LB@@LB@Energy -9.12 kcal/mol@LB@Hybridization Energy -16.8445 kcal/mol@LB@Unfolding Energy - mRNA 3.76103 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 95 -- 107@LB@Position - sRNA 48 -- 60@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 165 |
0.01211 |
0.2504 |
b3642 |
pyrE |
-11.74 |
0.138291 |
22 -- 41 |
7 -- 25 |
orotate phosphoribosyltransferase |
|
_____________21___________________42\n_____________|____________________|\n5'-CGG...GUGCA_______GCA_____C____CGUUC...AUU-3'\n______________GGGGACG___GAAGG_GAGC\n______________||||||:___:|||:_:|||\n______________CCCCUGU___UUUCU_UUCG\n3'-UUU...UUUUA_______AG______U____UCACCG-5'\n_____________|____________________|\n_____________26___________________6\n |
22 -- 28 |
19 -- 25 |
-22.5653 kcal/mol |
10.1153 kcal/mol |
0.70626 kcal/mol |
21 42@LB@ | |@LB@5'-CGG...GUGCA GCA C CGUUC...AUU-3'@LB@ GGGGACG GAAGG GAGC@LB@ ||||||: :|||: :|||@LB@ CCCCUGU UUUCU UUCG@LB@3'-UUU...UUUUA AG U UCACCG-5'@LB@ | |@LB@ 26 6@LB@@LB@@LB@Energy -11.74 kcal/mol@LB@Hybridization Energy -22.5653 kcal/mol@LB@Unfolding Energy - mRNA 10.1153 kcal/mol@LB@Unfolding Energy - sRNA 0.70626 kcal/mol@LB@@LB@Position - mRNA 22 -- 41@LB@Position - sRNA 7 -- 25@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 166 |
0.01216 |
0.2504 |
b4485 |
ytfR |
-12.60 |
0.094393 |
18 -- 41 |
9 -- 34 |
putative sugar ABC transporter ATPase |
|
_____________17_________________________42\n_____________|__________________________|\n5'-CCU...UGAUA________GAA_______________AGAAA...GCC-3'\n______________CCGCAAAA____GA_AUUAGAGAAGA\n______________||:|||||____||_||:|:||||:|\n______________GGUGUUUU____CU_UAGUUUCUUUU\n3'-UUU...CCCGA________ACCC__G___________CGUCACCG-5'\n_____________|__________________________|\n_____________35_________________________8\n |
35 -- 41 |
9 -- 15 |
-17.8797 kcal/mol |
1.35017 kcal/mol |
3.92941 kcal/mol |
17 42@LB@ | |@LB@5'-CCU...UGAUA GAA AGAAA...GCC-3'@LB@ CCGCAAAA GA AUUAGAGAAGA@LB@ ||:||||| || ||:|:||||:|@LB@ GGUGUUUU CU UAGUUUCUUUU@LB@3'-UUU...CCCGA ACCC G CGUCACCG-5'@LB@ | |@LB@ 35 8@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -17.8797 kcal/mol@LB@Unfolding Energy - mRNA 1.35017 kcal/mol@LB@Unfolding Energy - sRNA 3.92941 kcal/mol@LB@@LB@Position - mRNA 18 -- 41@LB@Position - sRNA 9 -- 34@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 167 |
0.01216 |
0.2504 |
b1013 |
rutR |
-12.90 |
0.082087 |
181 -- 218 |
3 -- 35 |
rut operon transcriptional repressor for |
b0796 |
_____________180________________________________________219\n_____________|__________________________________________|\n5'-CAA...GCCAA_______________GAGCGCAUGACG_____C_________AAAAC...AAU-3'\n______________UCUACAAGA_GGGGA____________CAAGG____GCAGUG\n______________||:||||:|_|||||____________|||:|____||||||\n______________AGGUGUUUU_CCCCU____________GUUUC____CGUCAC\n3'-UUU...ACCCG_________A_____GUA______________UUUU______CG-5'\n_____________|__________________________________________|\n_____________36_________________________________________2\n |
181 -- 187 |
29 -- 35 |
-29.1146 kcal/mol |
11.1798 kcal/mol |
5.03644 kcal/mol |
180 219@LB@ | |@LB@5'-CAA...GCCAA GAGCGCAUGACG C AAAAC...AAU-3'@LB@ UCUACAAGA GGGGA CAAGG GCAGUG@LB@ ||:||||:| ||||| |||:| ||||||@LB@ AGGUGUUUU CCCCU GUUUC CGUCAC@LB@3'-UUU...ACCCG A GUA UUUU CG-5'@LB@ | |@LB@ 36 2@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -29.1146 kcal/mol@LB@Unfolding Energy - mRNA 11.1798 kcal/mol@LB@Unfolding Energy - sRNA 5.03644 kcal/mol@LB@@LB@Position - mRNA 181 -- 218@LB@Position - sRNA 3 -- 35@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 168 |
0.01219 |
0.2504 |
b1830 |
prc |
-10.01 |
0.273454 |
1 -- 12 |
6 -- 17 |
carboxy-terminal protease for penicillin-binding protein 3 |
|
______________1___________13\n______________|___________|\n___________5'-_______C____CACCC...CGG-3'\n______________CGAAGAA_AGCA\n______________|:|||||_||||\n______________GUUUCUU_UCGU\n3'-UUU...CUGUA_______U____CACCG-5'\n_____________|____________|\n_____________18___________5\n |
1 -- 7 |
11 -- 17 |
-11.3077 kcal/mol |
0.751361 kcal/mol |
0.542636 kcal/mol |
1 13@LB@ | |@LB@ 5'- C CACCC...CGG-3'@LB@ CGAAGAA AGCA@LB@ |:||||| ||||@LB@ GUUUCUU UCGU@LB@3'-UUU...CUGUA U CACCG-5'@LB@ | |@LB@ 18 5@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -11.3077 kcal/mol@LB@Unfolding Energy - mRNA 0.751361 kcal/mol@LB@Unfolding Energy - sRNA 0.542636 kcal/mol@LB@@LB@Position - mRNA 1 -- 12@LB@Position - sRNA 6 -- 17@LB@Position Seed - mRNA 1 -- 7@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 169 |
0.01228 |
0.2504 |
b3386 |
rpe |
-13.36 |
0.065831 |
171 -- 203 |
3 -- 33 |
D-ribulose-5-phosphate 3-epimerase |
|
_____________170_______________________________204\n_____________|_________________________________|\n5'-CGC...UCACC_______AAAUAAUUC______________A__AAACA...UGC-3'\n______________CGCGAAA_________UCAAGGAGAAGCGG_UG\n______________|:|:|||_________||||:||:||||:|_||\n______________GUGUUUU_________AGUUUCUUUUCGUC_AC\n3'-UUU...CCGAG_______ACCCCUGU__________________CG-5'\n_____________|_________________________________|\n_____________34________________________________2\n |
194 -- 200 |
5 -- 11 |
-23.2607 kcal/mol |
6.82691 kcal/mol |
3.0786 kcal/mol |
170 204@LB@ | |@LB@5'-CGC...UCACC AAAUAAUUC A AAACA...UGC-3'@LB@ CGCGAAA UCAAGGAGAAGCGG UG@LB@ |:|:||| ||||:||:||||:| ||@LB@ GUGUUUU AGUUUCUUUUCGUC AC@LB@3'-UUU...CCGAG ACCCCUGU CG-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -23.2607 kcal/mol@LB@Unfolding Energy - mRNA 6.82691 kcal/mol@LB@Unfolding Energy - sRNA 3.0786 kcal/mol@LB@@LB@Position - mRNA 171 -- 203@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 170 |
0.01232 |
0.2504 |
b2580 |
ung |
-11.45 |
0.156876 |
183 -- 205 |
1 -- 22 |
uracil-DNA-glycosylase |
|
_____________182______________________206\n_____________|________________________|\n5'-UCU...UUGAA_______C________G__A____UAACG...CCG-3'\n______________GAU_UCG_AGGAGAGC_AG_UGGC\n______________||:_||:_||:|:|||_||_||||\n______________CUG_AGU_UCUUUUCG_UC_ACCG\n3'-UUU...UACCC___U___U________________-5'\n_____________|_______________________|\n_____________23______________________1\n |
191 -- 197 |
7 -- 13 |
-20.4372 kcal/mol |
7.45123 kcal/mol |
1.54023 kcal/mol |
182 206@LB@ | |@LB@5'-UCU...UUGAA C G A UAACG...CCG-3'@LB@ GAU UCG AGGAGAGC AG UGGC@LB@ ||: ||: ||:|:||| || ||||@LB@ CUG AGU UCUUUUCG UC ACCG@LB@3'-UUU...UACCC U U -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -20.4372 kcal/mol@LB@Unfolding Energy - mRNA 7.45123 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 7 -- 13@LB@ |
