131 |
0.009354 |
0.2491 |
b4478 |
dgoD |
-14.24 |
0.041949 |
180 -- 199 |
1 -- 22 |
D-galactonate dehydratase |
|
_____________179____________________200\n_____________|______________________|\n5'-AAA...GUUAA_____AUC______________AAUGA...UGA-3'\n______________GGCGU____GAGAGGCAGUG_C\n______________|:|:|____||:|:||||||_|\n______________CUGUA____CUUUUCGUCAC_G\n3'-UUU...UACCC_____GUUU___________C_-5'\n_____________|_____________________|\n_____________23____________________1\n |
192 -- 198 |
3 -- 9 |
-21.1696 kcal/mol |
5.38995 kcal/mol |
1.54023 kcal/mol |
179 200@LB@ | |@LB@5'-AAA...GUUAA AUC AAUGA...UGA-3'@LB@ GGCGU GAGAGGCAGUG C@LB@ |:|:| ||:|:|||||| |@LB@ CUGUA CUUUUCGUCAC G@LB@3'-UUU...UACCC GUUU C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -21.1696 kcal/mol@LB@Unfolding Energy - mRNA 5.38995 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 180 -- 199@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 3 -- 9@LB@ |
132 |
0.00937 |
0.2491 |
b1120 |
cobB |
-12.17 |
0.114836 |
175 -- 191 |
3 -- 18 |
deacetylase of acs and cheY chemotaxis regulator |
|
_____________174_______________192\n_____________|_________________|\n5'-CGC...UUUUU_______U_________CCGGA...AUC-3'\n______________UCAGAGA_AAAGUGGUG\n______________|||:|||_||||::|||\n______________AGUUUCU_UUUCGUCAC\n3'-UUU...CCUGU_________________CG-5'\n_____________|_________________|\n_____________19________________2\n |
185 -- 191 |
3 -- 9 |
-17.0979 kcal/mol |
3.47557 kcal/mol |
1.45388 kcal/mol |
174 192@LB@ | |@LB@5'-CGC...UUUUU U CCGGA...AUC-3'@LB@ UCAGAGA AAAGUGGUG@LB@ |||:||| ||||::|||@LB@ AGUUUCU UUUCGUCAC@LB@3'-UUU...CCUGU CG-5'@LB@ | |@LB@ 19 2@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -17.0979 kcal/mol@LB@Unfolding Energy - mRNA 3.47557 kcal/mol@LB@Unfolding Energy - sRNA 1.45388 kcal/mol@LB@@LB@Position - mRNA 175 -- 191@LB@Position - sRNA 3 -- 18@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 3 -- 9@LB@ |
133 |
0.009634 |
0.2504 |
b2551 |
glyA |
-13.83 |
0.051752 |
272 -- 286 |
6 -- 21 |
serine hydroxymethyltransferase |
|
_____________271______________287\n_____________|________________|\n5'-CAA...AAAGU________________CAUCG...UCG-3'\n______________ACGUC_AGGAAGAGCA\n______________||:||_|:|||:||||\n______________UGUAG_UUCUUUUCGU\n3'-UUU...ACCCC_____U__________CACCG-5'\n_____________|________________|\n_____________22_______________5\n |
280 -- 286 |
6 -- 12 |
-16.7043 kcal/mol |
2.28484 kcal/mol |
0.584589 kcal/mol |
271 287@LB@ | |@LB@5'-CAA...AAAGU CAUCG...UCG-3'@LB@ ACGUC AGGAAGAGCA@LB@ ||:|| |:|||:||||@LB@ UGUAG UUCUUUUCGU@LB@3'-UUU...ACCCC U CACCG-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -13.83 kcal/mol@LB@Hybridization Energy -16.7043 kcal/mol@LB@Unfolding Energy - mRNA 2.28484 kcal/mol@LB@Unfolding Energy - sRNA 0.584589 kcal/mol@LB@@LB@Position - mRNA 272 -- 286@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 6 -- 12@LB@ |
134 |
0.009704 |
0.2504 |
b1444 |
patD |
-10.55 |
0.224369 |
279 -- 297 |
10 -- 25 |
gamma-aminobutyraldehyde dehydrogenase |
|
_____________278_________________298\n_____________|___________________|\n5'-UCG...CAACG_________UUACU_____UUG-3'\n______________GGGGACGUU_____GGAAA\n______________||||||:|:_____:||||\n______________CCCCUGUAG_____UCUUU\n3'-UUU...UUUUA_________UU________UCGUC...CCG-5'\n_____________|___________________|\n_____________26__________________9\n |
281 -- 287 |
17 -- 23 |
-18.1658 kcal/mol |
6.94606 kcal/mol |
0.670388 kcal/mol |
278 298@LB@ | |@LB@5'-UCG...CAACG UUACU UUG-3'@LB@ GGGGACGUU GGAAA@LB@ ||||||:|: :||||@LB@ CCCCUGUAG UCUUU@LB@3'-UUU...UUUUA UU UCGUC...CCG-5'@LB@ | |@LB@ 26 9@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -18.1658 kcal/mol@LB@Unfolding Energy - mRNA 6.94606 kcal/mol@LB@Unfolding Energy - sRNA 0.670388 kcal/mol@LB@@LB@Position - mRNA 279 -- 297@LB@Position - sRNA 10 -- 25@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 17 -- 23@LB@ |
135 |
0.009724 |
0.2504 |
b1387 |
paaZ |
-12.57 |
0.095542 |
174 -- 198 |
5 -- 30 |
oxepin-CoA hydrolase and 3-oxo-5 6-dehydrosuberyl-CoA semialdehyde dehydrogenase |
|
_____________173_________________________199\n_____________|___________________________|\n5'-UAA...CAACA______U_AA_____U___________CGAUG...AAG-3'\n______________GAAAUG_G__ACAUC___GGAGAGUAG\n______________:|||||_|__|||||___|:|:||:||\n______________UUUUAC_C__UGUAG___CUUUUCGUC\n3'-UUU...AGGUG________CC_____UUU_________ACCG-5'\n_____________|___________________________|\n_____________31__________________________4\n |
192 -- 198 |
5 -- 11 |
-19.0129 kcal/mol |
3.93627 kcal/mol |
2.50278 kcal/mol |
173 199@LB@ | |@LB@5'-UAA...CAACA U AA U CGAUG...AAG-3'@LB@ GAAAUG G ACAUC GGAGAGUAG@LB@ :||||| | ||||| |:|:||:||@LB@ UUUUAC C UGUAG CUUUUCGUC@LB@3'-UUU...AGGUG CC UUU ACCG-5'@LB@ | |@LB@ 31 4@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -19.0129 kcal/mol@LB@Unfolding Energy - mRNA 3.93627 kcal/mol@LB@Unfolding Energy - sRNA 2.50278 kcal/mol@LB@@LB@Position - mRNA 174 -- 198@LB@Position - sRNA 5 -- 30@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 5 -- 11@LB@ |
136 |
0.00981 |
0.2504 |
b4063 |
soxR |
-14.24 |
0.041834 |
39 -- 60 |
1 -- 21 |
redox-sensitive transcriptional activator of soxS; autorepressor |
|
_____________38_____________________61\n_____________|______________________|\n5'-GCA...CGACU_______U_UU______C____CAAUA...GUA-3'\n______________ACAUCAA_G__AAGCGG_UGGU\n______________|||||||_|__||||:|_|||:\n______________UGUAGUU_C__UUCGUC_ACCG\n3'-UUU...ACCCC_______U_UU___________-5'\n_____________|_____________________|\n_____________22____________________1\n |
39 -- 45 |
15 -- 21 |
-21.0533 kcal/mol |
5.29766 kcal/mol |
1.51103 kcal/mol |
38 61@LB@ | |@LB@5'-GCA...CGACU U UU C CAAUA...GUA-3'@LB@ ACAUCAA G AAGCGG UGGU@LB@ ||||||| | ||||:| |||:@LB@ UGUAGUU C UUCGUC ACCG@LB@3'-UUU...ACCCC U UU -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -21.0533 kcal/mol@LB@Unfolding Energy - mRNA 5.29766 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 39 -- 60@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 15 -- 21@LB@ |
137 |
0.0102 |
0.2504 |
b0957 |
ompA |
-10.25 |
0.250752 |
198 -- 232 |
1 -- 30 |
outer membrane protein A (3a;II*;G;d) |
|
_____________197_________________________________233\n_____________|___________________________________|\n5'-CUU...CGCAA______AAAAA____GCUAUCGC__UU________ACUGG...AAC-3'\n______________AAAAUG_____GACA________GA__GCAGUGGC\n______________||||||_____||||________:|__||||||||\n______________UUUUAC_____CUGU________UU__CGUCACCG\n3'-UUU...AGGUG______CC_______AGUUUC____UU________-5'\n_____________|__________________________________|\n_____________31_________________________________1\n |
226 -- 232 |
1 -- 7 |
-21.624 kcal/mol |
8.85247 kcal/mol |
2.51911 kcal/mol |
197 233@LB@ | |@LB@5'-CUU...CGCAA AAAAA GCUAUCGC UU ACUGG...AAC-3'@LB@ AAAAUG GACA GA GCAGUGGC@LB@ |||||| |||| :| ||||||||@LB@ UUUUAC CUGU UU CGUCACCG@LB@3'-UUU...AGGUG CC AGUUUC UU -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -21.624 kcal/mol@LB@Unfolding Energy - mRNA 8.85247 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 198 -- 232@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 1 -- 7@LB@ |
138 |
0.0102 |
0.2504 |
b0830 |
gsiB |
-12.88 |
0.082739 |
282 -- 298 |
1 -- 16 |
glutathione ABC transporter periplasmic binding protein |
|
_____________281_______________299\n_____________|_________________|\n5'-GGC...CUGCC_____UGU_________GG-3'\n______________AAAGA___GGUGGUGGC\n______________|||||___:|::|||||\n______________UUUCU___UCGUCACCG\n3'-UUU...UGUAG_____UU__________-5'\n_____________|________________|\n_____________17_______________1\n |
292 -- 298 |
1 -- 7 |
-17.0557 kcal/mol |
2.82856 kcal/mol |
1.34555 kcal/mol |
281 299@LB@ | |@LB@5'-GGC...CUGCC UGU GG-3'@LB@ AAAGA GGUGGUGGC@LB@ ||||| :|::|||||@LB@ UUUCU UCGUCACCG@LB@3'-UUU...UGUAG UU -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -17.0557 kcal/mol@LB@Unfolding Energy - mRNA 2.82856 kcal/mol@LB@Unfolding Energy - sRNA 1.34555 kcal/mol@LB@@LB@Position - mRNA 282 -- 298@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 1 -- 7@LB@ |
139 |
0.01022 |
0.2504 |
b3163 |
nlpI |
-13.31 |
0.067339 |
19 -- 42 |
4 -- 21 |
lipoprotein involved in osmotic sensitivity and filamentation |
|
_____________18_______________________43\n_____________|________________________|\n5'-AGG...UCUGA___________GCGACU_______CUCAA...CAU-3'\n______________GCAUUAAAGAA______GAGCAGU\n______________:|||:||||||______:||||||\n______________UGUAGUUUCUU______UUCGUCA\n3'-UUU...ACCCC________________________CCG-5'\n_____________|________________________|\n_____________22_______________________3\n |
36 -- 42 |
4 -- 10 |
-18.4935 kcal/mol |
3.67449 kcal/mol |
1.51 kcal/mol |
18 43@LB@ | |@LB@5'-AGG...UCUGA GCGACU CUCAA...CAU-3'@LB@ GCAUUAAAGAA GAGCAGU@LB@ :|||:|||||| :||||||@LB@ UGUAGUUUCUU UUCGUCA@LB@3'-UUU...ACCCC CCG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -18.4935 kcal/mol@LB@Unfolding Energy - mRNA 3.67449 kcal/mol@LB@Unfolding Energy - sRNA 1.51 kcal/mol@LB@@LB@Position - mRNA 19 -- 42@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 4 -- 10@LB@ |
140 |
0.01029 |
0.2504 |
b3247 |
rng |
-10.20 |
0.255190 |
49 -- 63 |
1 -- 14 |
ribonuclease G |
|
_____________48______________64\n_____________|_______________|\n5'-GUU...CCGUU___U_______GU__AUACG...CGC-3'\n______________AGA_AAAGCAG__GC\n______________|||_|||||||__||\n______________UCU_UUUCGUC__CG\n3'-UUU...UAGUU___________AC__-5'\n_____________|______________|\n_____________15_____________1\n |
53 -- 59 |
5 -- 11 |
-13.7724 kcal/mol |
2.22711 kcal/mol |
1.34059 kcal/mol |
48 64@LB@ | |@LB@5'-GUU...CCGUU U GU AUACG...CGC-3'@LB@ AGA AAAGCAG GC@LB@ ||| ||||||| ||@LB@ UCU UUUCGUC CG@LB@3'-UUU...UAGUU AC -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -13.7724 kcal/mol@LB@Unfolding Energy - mRNA 2.22711 kcal/mol@LB@Unfolding Energy - sRNA 1.34059 kcal/mol@LB@@LB@Position - mRNA 49 -- 63@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 5 -- 11@LB@ |