Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 5340603

Input and runtime details for job 5340603 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 5340603 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:31:51 CET 2014
?Processing Started@ Mon Oct 27 19:32:06 CET 2014
?CopraRNA Finished & Post-Processing@ Mon Oct 27 22:34:48 CET 2014
?Post-Processing Finished@ Mon Oct 27 22:34:49 CET 2014
?Job Completed@ Mon Oct 27 22:34:59 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=5340603&toolName=CopraRNA ( 30 days expiry )

The job description you specified

MicC

Output download complete results [zip]

Downloadable files

[csv]
[txt]
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[txt] [svg]


heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 1.661e-19 6.088e-16 b2215 ompC -21.06 0.000012 139 -- 186 1 -- 65 outer membrane porin protein C   0
2 1.005e-05 0.01842 b0889 lrp -14.55 0.004276 166 -- 212 1 -- 58 leucine-responsive global transcriptional regulator   0
3 1.996e-05 0.02438 b4255 rraB -13.58 0.008438 142 -- 156 41 -- 54 protein inhibitor of RNase E   0
4 0.000111 0.1017 b2597 raiA -12.12 0.022090 184 -- 211 11 -- 38 cold shock protein associated with 30S ribosomal subunit   0
5 0.0006357 0.4659 b4403 yjtD -13.64 0.008126 193 -- 211 1 -- 21 putative methyltransferase   0
6 0.0008241 0.5033 b0081 mraZ -13.76 0.007485 154 -- 207 1 -- 59 RsmH methytransferase inhibitor   0
7 0.001584 0.5967 b3789 rffH -8.35 0.183202 95 -- 106 51 -- 65 glucose-1-phosphate thymidylyltransferase   1
8 0.001586 0.5967 b2708 srlQ -7.79 0.238186 5 -- 26 43 -- 60 D-arabinose 5-phosphate isomerase   0
9 0.001615 0.5967 b0085 murE -11.93 0.024794 143 -- 190 8 -- 51 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase   0
10 0.001708 0.5967 b1205 ychH -13.10 0.011698 245 -- 269 40 -- 68 DUF2583 family putative inner membrane protein   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1