31 |
0.001906 |
0.2067 |
b0198 |
metI |
-9.82 |
0.132421 |
237 -- 257 |
48 -- 68 |
DL-methionine transporter subunit |
|
_____________236____________________258\n_____________|______________________|\n5'-UCA...GUGGC__A__________C________ACCUU...CGG-3'\n______________GU_UGGGAAA_CG_UGGCAAUG\n______________||_|||:|||_|:_||||||||\n______________CA_ACCUUUU_GU_ACCGUUAC\n3'-UUU...AUAUA__________A__C________GUUAC...UUG-5'\n_____________|______________________|\n_____________69_____________________47\n |
251 -- 257 |
48 -- 54 |
-20.2902 kcal/mol |
6.26471 kcal/mol |
4.20468 kcal/mol |
236 258@LB@ | |@LB@5'-UCA...GUGGC A C ACCUU...CGG-3'@LB@ GU UGGGAAA CG UGGCAAUG@LB@ || |||:||| |: ||||||||@LB@ CA ACCUUUU GU ACCGUUAC@LB@3'-UUU...AUAUA A C GUUAC...UUG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -9.82 kcal/mol@LB@Hybridization Energy -20.2902 kcal/mol@LB@Unfolding Energy - mRNA 6.26471 kcal/mol@LB@Unfolding Energy - sRNA 4.20468 kcal/mol@LB@@LB@Position - mRNA 237 -- 257@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 48 -- 54@LB@ |
32 |
0.002002 |
0.2088 |
b0423 |
thiI |
-12.47 |
0.034301 |
40 -- 74 |
41 -- 65 |
tRNA s(4)U8 sulfurtransferase |
|
_____________39_____________________________________75\n_____________|______________________________________|\n5'-AUG...GUAAC___C____________AUAGCAAAUAACGC________AAGGU...UUU-3'\n______________GGA___UCAG_GGCAA______________GCAAUGGU\n______________|||___||||_|||||______________|||||||:\n______________CCU___AGUC_CCGUU______________CGUUACCG\n3'-UUU...UACAA___UUU____A_____A_____________________GGUUG...UUG-5'\n_____________|______________________________________|\n_____________66_____________________________________40\n |
68 -- 74 |
41 -- 47 |
-23.8518 kcal/mol |
5.56921 kcal/mol |
5.80973 kcal/mol |
39 75@LB@ | |@LB@5'-AUG...GUAAC C AUAGCAAAUAACGC AAGGU...UUU-3'@LB@ GGA UCAG GGCAA GCAAUGGU@LB@ ||| |||| ||||| |||||||:@LB@ CCU AGUC CCGUU CGUUACCG@LB@3'-UUU...UACAA UUU A A GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -12.47 kcal/mol@LB@Hybridization Energy -23.8518 kcal/mol@LB@Unfolding Energy - mRNA 5.56921 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 40 -- 74@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 41 -- 47@LB@ |
33 |
0.002101 |
0.2088 |
b1300 |
puuC |
-8.92 |
0.198515 |
81 -- 101 |
2 -- 20 |
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase |
b0312 |
_____________80____________________102\n_____________|_____________________|\n5'-GGC...CGGCU___AG_______U________AGAAU...AAA-3'\n______________UGA__GAUGAAG_GUAUAUAA\n______________|||__:||:|||_|:||||||\n______________ACU__UUAUUUC_CGUAUAUU\n3'-UUU...UAGAC___G_________________G-5'\n_____________|_____________________|\n_____________21____________________1\n |
94 -- 100 |
3 -- 9 |
-14.4968 kcal/mol |
1.34672 kcal/mol |
4.22649 kcal/mol |
80 102@LB@ | |@LB@5'-GGC...CGGCU AG U AGAAU...AAA-3'@LB@ UGA GAUGAAG GUAUAUAA@LB@ ||| :||:||| |:||||||@LB@ ACU UUAUUUC CGUAUAUU@LB@3'-UUU...UAGAC G G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -8.92 kcal/mol@LB@Hybridization Energy -14.4968 kcal/mol@LB@Unfolding Energy - mRNA 1.34672 kcal/mol@LB@Unfolding Energy - sRNA 4.22649 kcal/mol@LB@@LB@Position - mRNA 81 -- 101@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 3 -- 9@LB@ |
34 |
0.002116 |
0.2088 |
b0081 |
mraZ |
-11.86 |
0.047767 |
154 -- 189 |
9 -- 59 |
RsmH methytransferase inhibitor |
|
_____________153___________________________________________________190\n_____________|_____________________________________________________|\n5'-GAU...UCCUU_______G__AU_________AA_____________________G________GUGAG...AAA-3'\n______________UCAGUGG_AA__UGUGG_GGC__A________________GUGG_AAUAAGGG\n______________|||||||_||__||:::_|||__|________________|||:_|||||:||\n______________AGUCACC_UU__ACGUU_CCG__U________________CACU_UUAUUUCC\n3'-UUU...CUUUU_______G_________A___GG_UGUCUUUUAUUUUAGA____G________GUAUAUUG-5'\n_____________|_____________________________________________________|\n_____________60____________________________________________________8\n |
183 -- 189 |
9 -- 15 |
-29.7093 kcal/mol |
6.7157 kcal/mol |
11.1344 kcal/mol |
153 190@LB@ | |@LB@5'-GAU...UCCUU G AU AA G GUGAG...AAA-3'@LB@ UCAGUGG AA UGUGG GGC A GUGG AAUAAGGG@LB@ ||||||| || ||::: ||| | |||: |||||:||@LB@ AGUCACC UU ACGUU CCG U CACU UUAUUUCC@LB@3'-UUU...CUUUU G A GG UGUCUUUUAUUUUAGA G GUAUAUUG-5'@LB@ | |@LB@ 60 8@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -29.7093 kcal/mol@LB@Unfolding Energy - mRNA 6.7157 kcal/mol@LB@Unfolding Energy - sRNA 11.1344 kcal/mol@LB@@LB@Position - mRNA 154 -- 189@LB@Position - sRNA 9 -- 59@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 9 -- 15@LB@ |
35 |
0.002227 |
0.2088 |
b1482 |
osmC |
-7.15 |
0.399399 |
183 -- 208 |
14 -- 42 |
lipoyl-dependent Cys-based peroxidase hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin |
|
_____________182___________________________209\n_____________|_____________________________|\n5'-UAG...UUUAA_____________GCAACAA_________CCAUA...CGU-3'\n______________GCCC_ACAGGAGA_________UGACAAU\n______________||||_||||:|:|_________|||||||\n______________CGGG_UGUCUUUU_________ACUGUUA\n3'-UUU...GUUAC____U________AUUUUAGAC_______UUUCC...UUG-5'\n_____________|_____________________________|\n_____________43____________________________13\n |
202 -- 208 |
14 -- 20 |
-22.1887 kcal/mol |
4.46968 kcal/mol |
10.5676 kcal/mol |
182 209@LB@ | |@LB@5'-UAG...UUUAA GCAACAA CCAUA...CGU-3'@LB@ GCCC ACAGGAGA UGACAAU@LB@ |||| ||||:|:| |||||||@LB@ CGGG UGUCUUUU ACUGUUA@LB@3'-UUU...GUUAC U AUUUUAGAC UUUCC...UUG-5'@LB@ | |@LB@ 43 13@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -22.1887 kcal/mol@LB@Unfolding Energy - mRNA 4.46968 kcal/mol@LB@Unfolding Energy - sRNA 10.5676 kcal/mol@LB@@LB@Position - mRNA 183 -- 208@LB@Position - sRNA 14 -- 42@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 14 -- 20@LB@ |
36 |
0.002273 |
0.2088 |
b4138 |
dcuA |
-11.14 |
0.069498 |
259 -- 284 |
41 -- 65 |
C4-dicarboxylate antiporter |
|
_____________258__________________________285\n_____________|____________________________|\n5'-AAC...AUUGG_______A___AUU___UU_________GGAUU...UGG-3'\n______________GGGGAAU_GGU___GGU__UGCA__GGC\n______________||::|||_:||___||:__||||__|||\n______________CCUUUUA_UCA___CCG__ACGU__CCG\n3'-UUU...UACAA_______G_________UU____UA___GGUUG...UUG-5'\n_____________|____________________________|\n_____________66___________________________40\n |
259 -- 265 |
59 -- 65 |
-20.3442 kcal/mol |
3.39574 kcal/mol |
5.80973 kcal/mol |
258 285@LB@ | |@LB@5'-AAC...AUUGG A AUU UU GGAUU...UGG-3'@LB@ GGGGAAU GGU GGU UGCA GGC@LB@ ||::||| :|| ||: |||| |||@LB@ CCUUUUA UCA CCG ACGU CCG@LB@3'-UUU...UACAA G UU UA GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -20.3442 kcal/mol@LB@Unfolding Energy - mRNA 3.39574 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 259 -- 284@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 59 -- 65@LB@ |
37 |
0.002433 |
0.2088 |
b2825 |
ppdB |
-7.88 |
0.305516 |
133 -- 146 |
40 -- 54 |
putative prepilin peptidase-dependent protein |
|
_____________132_____________147\n_____________|_______________|\n5'-CAU...CAACG_______________GGUGG...CGU-3'\n______________GGCGA_GUGGUGGCU\n______________|||:|_|:::||||:\n______________CCGUU_CGUUACCGG\n3'-UUU...AGUCA_____A_________GUUGU...UUG-5'\n_____________|_______________|\n_____________55______________39\n |
140 -- 146 |
40 -- 46 |
-19.4494 kcal/mol |
6.98652 kcal/mol |
4.58617 kcal/mol |
132 147@LB@ | |@LB@5'-CAU...CAACG GGUGG...CGU-3'@LB@ GGCGA GUGGUGGCU@LB@ |||:| |:::||||:@LB@ CCGUU CGUUACCGG@LB@3'-UUU...AGUCA A GUUGU...UUG-5'@LB@ | |@LB@ 55 39@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -19.4494 kcal/mol@LB@Unfolding Energy - mRNA 6.98652 kcal/mol@LB@Unfolding Energy - sRNA 4.58617 kcal/mol@LB@@LB@Position - mRNA 133 -- 146@LB@Position - sRNA 40 -- 54@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 40 -- 46@LB@ |
38 |
0.00253 |
0.2088 |
b3789 |
rffH |
-8.84 |
0.205897 |
98 -- 106 |
51 -- 59 |
glucose-1-phosphate thymidylyltransferase |
|
_____________97________107\n_____________|_________|\n5'-GGC...ACGGU_________UCUGG...UGA-3'\n______________UCAGUGGUA\n______________|||||||:|\n______________AGUCACCGU\n3'-UUU...CUUUU_________UACGU...UUG-5'\n_____________|_________|\n_____________60________50\n |
100 -- 106 |
51 -- 57 |
-13.9039 kcal/mol |
2.34576 kcal/mol |
2.71896 kcal/mol |
97 107@LB@ | |@LB@5'-GGC...ACGGU UCUGG...UGA-3'@LB@ UCAGUGGUA@LB@ |||||||:|@LB@ AGUCACCGU@LB@3'-UUU...CUUUU UACGU...UUG-5'@LB@ | |@LB@ 60 50@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -13.9039 kcal/mol@LB@Unfolding Energy - mRNA 2.34576 kcal/mol@LB@Unfolding Energy - sRNA 2.71896 kcal/mol@LB@@LB@Position - mRNA 98 -- 106@LB@Position - sRNA 51 -- 59@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 51 -- 57@LB@ |
39 |
0.002581 |
0.2088 |
b3991 |
thiG |
-13.93 |
0.014953 |
9 -- 37 |
40 -- 69 |
thiamine biosynthesis ThiGH complex subunit |
|
_____________8_______________________________38\n_____________|_______________________________|\n___5'-GCAGAUCC____UAAC_____A_____________C___GCCGG...CCG-3'\n______________UGUU____GAUCA___GCGAUGCAGUG_GCC\n______________||||____:||||___||:|||||:||_|||\n______________ACAA____UUAGU___CGUUACGUUAC_CGG\n3'-UUU...AAUAU____CCUU_____CAC_______________GUUGU...UUG-5'\n_____________|_______________________________|\n_____________70______________________________39\n |
27 -- 33 |
43 -- 49 |
-27.0914 kcal/mol |
6.322 kcal/mol |
6.83756 kcal/mol |
8 38@LB@ | |@LB@ 5'-GCAGAUCC UAAC A C GCCGG...CCG-3'@LB@ UGUU GAUCA GCGAUGCAGUG GCC@LB@ |||| :|||| ||:|||||:|| |||@LB@ ACAA UUAGU CGUUACGUUAC CGG@LB@3'-UUU...AAUAU CCUU CAC GUUGU...UUG-5'@LB@ | |@LB@ 70 39@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -27.0914 kcal/mol@LB@Unfolding Energy - mRNA 6.322 kcal/mol@LB@Unfolding Energy - sRNA 6.83756 kcal/mol@LB@@LB@Position - mRNA 9 -- 37@LB@Position - sRNA 40 -- 69@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 43 -- 49@LB@ |
40 |
0.00261 |
0.2088 |
b3008 |
metC |
-11.48 |
0.058180 |
224 -- 274 |
11 -- 59 |
cystathionine beta-lyase PLP-dependent |
|
_____________223___________________________________________________275\n_____________|_____________________________________________________|\n5'-CGA...GAUAC___AC____G__________A_G_____A______CAC___C_GC________UAGCG...CGC-3'\n______________UCA__UGGU_AAUGCA__GG_C_CAGCA_AAAAUA___UCU_G__GCGGUAAA\n______________|||__|||:_||||||__||_|_||:||_||||||___|||_|__:|::||||\n______________AGU__ACCG_UUACGU__CC_G_GUUGU_UUUUAU___AGA_C__UGUUAUUU\n3'-UUU...CUUUU___C____________UA____G_____C______UUU_____AC________CCGUA...UUG-5'\n_____________|_____________________________________________________|\n_____________60____________________________________________________10\n |
268 -- 274 |
11 -- 17 |
-31.6805 kcal/mol |
9.07324 kcal/mol |
11.1233 kcal/mol |
223 275@LB@ | |@LB@5'-CGA...GAUAC AC G A G A CAC C GC UAGCG...CGC-3'@LB@ UCA UGGU AAUGCA GG C CAGCA AAAAUA UCU G GCGGUAAA@LB@ ||| |||: |||||| || | ||:|| |||||| ||| | :|::||||@LB@ AGU ACCG UUACGU CC G GUUGU UUUUAU AGA C UGUUAUUU@LB@3'-UUU...CUUUU C UA G C UUU AC CCGUA...UUG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -31.6805 kcal/mol@LB@Unfolding Energy - mRNA 9.07324 kcal/mol@LB@Unfolding Energy - sRNA 11.1233 kcal/mol@LB@@LB@Position - mRNA 224 -- 274@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 11 -- 17@LB@ |