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CopraRNA 7819033

Input and runtime details for job 7819033 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 7819033 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:25:17 CET 2018
?CopraRNA Started@ Fri Feb 16 15:25:46 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 21:05:24 CET 2018
?Post-Processing Finished@ Fri Feb 16 21:05:32 CET 2018
?Job Completed@ Fri Feb 16 21:05:57 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=7819033&toolName=CopraRNA ( 30 days expiry )

Description of the job

MicC

Output download complete results [zip]

Downloadable files

[csv]
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[csv]
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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
1 0 0 b2215 ompC -25.52 0.000001 134 -- 186 1 -- 70 outer membrane porin protein C  
2 3.183e-05 0.03921 b0889 lrp -15.78 0.004789 150 -- 212 1 -- 70 leucine-responsive global transcriptional regulator  
3 3.498e-05 0.03921 b4255 rraB -13.36 0.020838 142 -- 156 41 -- 54 protein inhibitor of RNase E  
4 6.145e-05 0.05167 b4217 ytfK -14.33 0.011783 150 -- 205 11 -- 68 DUF1107 family protein  
5 0.0001064 0.07159 b1784 yeaH -10.63 0.089613 150 -- 205 1 -- 57 UPF0229 family protein  
6 0.0002023 0.1081 b1884 cheR -8.31 0.257615 184 -- 205 1 -- 21 chemotaxis regulator protein-glutamate methyltransferase  
7 0.0002249 0.1081 b4032 malG -16.06 0.003987 187 -- 221 31 -- 65 maltose transporter subunit  
8 0.0003008 0.1262 b3191 mlaB -9.66 0.142648 16 -- 23 51 -- 58 ABC transporter maintaining OM lipid asymmetry cytoplasmic STAS component  
9 0.0003848 0.1262 b2708 srlQ -10.45 0.097910 5 -- 28 40 -- 60 D-arabinose 5-phosphate isomerase  
10 0.0004066 0.1262 b3429 glgA -9.74 0.137242 173 -- 185 51 -- 64 glycogen synthase  
11 0.000438 0.1262 b0467 priC -14.72 0.009297 1 -- 37 32 -- 65 primosomal replication protein N''  
12 0.0004505 0.1262 b3248 yhdE -11.12 0.070056 184 -- 205 1 -- 21 dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase  
13 0.0005138 0.1268 b0055 djlA -16.40 0.003186 213 -- 240 39 -- 65 membrane-anchored DnaK co-chaperone DNA-binding protein  
14 0.0005336 0.1268 b0178 skp -14.43 0.011083 94 -- 112 46 -- 65 periplasmic chaperone  
15 0.0005657 0.1268 b3715 yieH -7.91 0.301098 195 -- 204 4 -- 13 phosphoenolpyruvate and 6-phosphogluconate phosphatase  
16 0.0007379 0.1438 b3838 tatB -12.16 0.040760 131 -- 190 7 -- 68 TatABCE protein translocation system subunit  
17 0.0007572 0.1438 b2512 bamB -10.25 0.108120 60 -- 97 8 -- 56 BamABCDE complex OM biogenesis lipoprotein  
18 0.0007704 0.1438 b4526 ydaE -7.35 0.372707 186 -- 222 21 -- 54 conserved protein Rac prophage  
19 0.0008126 0.1438 b1205 ychH -14.60 0.010030 245 -- 269 40 -- 68 DUF2583 family putative inner membrane protein  
20 0.0008987 0.1511 b2597 raiA -11.08 0.071670 189 -- 211 11 -- 33 cold shock protein associated with 30S ribosomal subunit  
21 0.0009862 0.1579 b2572 rseA -10.60 0.091224 9 -- 29 44 -- 65 anti-sigma factor  
22 0.001182 0.1807 b3642 pyrE -13.24 0.022299 74 -- 119 8 -- 48 orotate phosphoribosyltransferase  
23 0.001281 0.182 b3541 dppD -11.06 0.072175 116 -- 139 1 -- 23 dipeptide/heme ABC transporter ATPas  
24 0.001299 0.182 b1267 yciO -12.11 0.041783 4 -- 24 36 -- 58 putative RNA binding protein  
25 0.001369 0.1841 b2599 pheA -10.09 0.116571 180 -- 205 1 -- 20 chorismate mutase and prephenate dehydratase P-protein  
26 0.00144 0.1863 b4406 yaeP -8.75 0.213688 187 -- 204 2 -- 20 UPF0253 family protein  
27 0.001616 0.2012 b0085 murE -13.53 0.018874 165 -- 198 1 -- 33 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase  
28 0.001683 0.2021 b0166 dapD -9.25 0.172213 119 -- 166 9 -- 65 2 3 4 5-tetrahydropyridine-2-carboxylate N-succinyltransferase  
29 0.001819 0.2065 b3648 gmk -8.89 0.201842 236 -- 243 51 -- 58 guanylate kinase  
30 0.001842 0.2065 b3574 yiaJ -8.97 0.194276 228 -- 279 20 -- 64 transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon  
31 0.001906 0.2067 b0198 metI -9.82 0.132421 237 -- 257 48 -- 68 DL-methionine transporter subunit  
32 0.002002 0.2088 b0423 thiI -12.47 0.034301 40 -- 74 41 -- 65 tRNA s(4)U8 sulfurtransferase  
33 0.002101 0.2088 b1300 puuC -8.92 0.198515 81 -- 101 2 -- 20 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase b0312
34 0.002116 0.2088 b0081 mraZ -11.86 0.047767 154 -- 189 9 -- 59 RsmH methytransferase inhibitor  
35 0.002227 0.2088 b1482 osmC -7.15 0.399399 183 -- 208 14 -- 42 lipoyl-dependent Cys-based peroxidase hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin  
36 0.002273 0.2088 b4138 dcuA -11.14 0.069498 259 -- 284 41 -- 65 C4-dicarboxylate antiporter  
37 0.002433 0.2088 b2825 ppdB -7.88 0.305516 133 -- 146 40 -- 54 putative prepilin peptidase-dependent protein  
38 0.00253 0.2088 b3789 rffH -8.84 0.205897 98 -- 106 51 -- 59 glucose-1-phosphate thymidylyltransferase  
39 0.002581 0.2088 b3991 thiG -13.93 0.014953 9 -- 37 40 -- 69 thiamine biosynthesis ThiGH complex subunit  
40 0.00261 0.2088 b3008 metC -11.48 0.058180 224 -- 274 11 -- 59 cystathionine beta-lyase PLP-dependent  
41 0.002667 0.2088 b2475 ypfJ -12.17 0.040379 232 -- 266 38 -- 70 putative neutral zinc metallopeptidase  
42 0.002679 0.2088 b1427 rimL -12.89 0.027177 178 -- 217 11 -- 49 ribosomal-protein-L7/L12-serine acetyltransferase  
43 0.002722 0.2088 b0192 nlpE -8.83 0.206883 4 -- 33 38 -- 65 lipoprotein involved with copper homeostasis and adhesion  
44 0.002732 0.2088 b3450 ugpC -10.48 0.096645 106 -- 116 47 -- 57 sn-glycerol-3-phosphate ABC transporter ATPase  
45 0.002879 0.2151 b3319 rplD -8.41 0.246804 191 -- 204 42 -- 54 50S ribosomal subunit protein L4  
46 0.003168 0.2306 b3066 dnaG -7.10 0.407270 188 -- 205 41 -- 63 DNA primase  
47 0.003222 0.2306 b1667 ydhR -16.61 0.002759 245 -- 266 34 -- 55 putative monooxygenase  
48 0.003417 0.237 b0002 thrA -15.68 0.005086 222 -- 242 46 -- 65 Bifunctional aspartokinase/homoserine dehydrogenase 1  
49 0.003464 0.237 b4260 pepA -9.32 0.166975 186 -- 204 42 -- 59 multifunctional aminopeptidase A: a cyteinylglycinase transcription regulator and site-specific recombination factor  
50 0.003719 0.237 b3705 yidC -9.36 0.163545 61 -- 100 7 -- 65 membrane protein insertase  
51 0.003814 0.237 b3888 yiiD -11.06 0.072417 149 -- 179 39 -- 72 GNAT family putative N-acetyltransferase  
52 0.003856 0.237 b2844 yqeF -12.45 0.034706 43 -- 109 1 -- 67 short chain acyltransferase  
53 0.003903 0.237 b0946 zapC -7.74 0.322468 177 -- 206 45 -- 76 FtsZ stabilizer  
54 0.003913 0.237 b0387 yaiI -8.67 0.221647 168 -- 177 9 -- 18 UPF0178 family protein  
55 0.003921 0.237 b1781 yeaE -12.93 0.026626 223 -- 235 47 -- 59 aldo-keto reductase methylglyoxal to acetol NADPH-dependent  
56 0.003989 0.237 b0453 ybaY -12.27 0.038324 59 -- 73 39 -- 55 outer membrane lipoprotein  
57 0.004077 0.237 b4198 ulaF -9.90 0.127727 21 -- 37 42 -- 55 L-ribulose 5-phosphate 4-epimerase  
58 0.004088 0.237 b0998 torD -12.26 0.038501 93 -- 144 1 -- 57 TorA-maturation chaperone  
59 0.004284 0.2442 b0094 ftsA -10.23 0.109208 176 -- 218 1 -- 63 ATP-binding cell division FtsK recruitment protein  
60 0.004583 0.2539 b0674 asnB -9.07 0.186262 281 -- 298 39 -- 51 asparagine synthetase B  
61 0.004706 0.2539 b3713 chrR -11.93 0.045896 122 -- 163 8 -- 58 chromate reductase Class I flavoprotein  
62 0.004714 0.2539 b0973 hyaB -9.08 0.185506 169 -- 187 48 -- 64 hydrogenase 1 large subunit  
63 0.004757 0.2539 b1342 ydaN -13.10 0.024145 140 -- 198 7 -- 70 putative Zn(II) transporter  
64 0.005005 0.2614 b3795 yifK -6.27 0.531551 193 -- 206 51 -- 64 putative APC family amino acid transporter  
65 0.005052 0.2614 b0451 amtB -9.90 0.127883 170 -- 220 11 -- 61 ammonium transporter  
66 0.005339 0.2645 b1476 fdnI -10.79 0.082799 156 -- 194 9 -- 48 formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible  
67 0.005347 0.2645 b4278 insG -9.22 0.173962 151 -- 164 45 -- 58 IS4 transposase  
68 0.005347 0.2645 b3184 yhbE -8.71 0.217326 12 -- 35 8 -- 33 EamA family inner membrane putative transporter  
69 0.005697 0.2777 b0829 gsiA -9.42 0.158982 246 -- 287 28 -- 64 glutathione ABC transporter ATPase  
70 0.005852 0.2791 b3524 yhjG -5.99 0.576071 198 -- 212 7 -- 18 putative inner membrane-anchored periplasmic AsmA family protein  
71 0.005918 0.2791 b4348 hsdS -11.53 0.056880 66 -- 85 42 -- 60 specificity determinant for hsdM and hsdR  
72 0.005975 0.2791 b1062 pyrC -13.01 0.025478 15 -- 31 41 -- 58 dihydro-orotase  
73 0.006265 0.2822 b2452 eutH -10.44 0.098342 69 -- 89 40 -- 58 ethanolamine transporter  
74 0.006275 0.2822 b3298 rpsM -14.03 0.014091 187 -- 207 39 -- 57 30S ribosomal subunit protein S13  
75 0.006388 0.2822 b2813 mltA -10.80 0.082551 232 -- 252 47 -- 66 membrane-bound lytic murein transglycosylase A  
76 0.006626 0.2822 b1658 purR -10.59 0.091499 175 -- 205 41 -- 63 transcriptional repressor hypoxanthine-binding  
77 0.006658 0.2822 b3347 fkpA -8.74 0.214444 80 -- 111 4 -- 28 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)  
78 0.006706 0.2822 b3738 atpB -10.93 0.077303 188 -- 216 28 -- 54 F0 sector of membrane-bound ATP synthase subunit a  
79 0.006804 0.2822 b2947 gshB -11.48 0.058268 213 -- 229 39 -- 54 glutathione synthetase  
80 0.006956 0.2822 b1914 uvrY -9.02 0.189987 260 -- 281 5 -- 24 response regulator in two-component regulatory system with BarA  
81 0.006985 0.2822 b0333 prpC -14.20 0.012743 251 -- 274 6 -- 28 2-methylcitrate synthase  
82 0.006986 0.2822 b3128 garD -14.80 0.008847 185 -- 224 15 -- 66 D-galactarate dehydrogenase  
83 0.007014 0.2822 b0815 opgE -11.11 0.070482 164 -- 204 2 -- 58 OPG biosynthetic transmembrane phosphoethanolamine transferase  
84 0.00705 0.2822 b2341 fadJ -9.52 0.152421 171 -- 187 39 -- 55 enoyl-CoA hydratase/epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase  
85 0.007532 0.2889 b4252 tabA -7.64 0.334848 14 -- 22 41 -- 49 biofilm modulator regulated by toxins; DUF386 family protein cupin superfamily protein  
86 0.007534 0.2889 b0189 rof -5.95 0.582576 103 -- 121 40 -- 57 modulator of Rho-dependent transcription termination  
87 0.007653 0.2889 b1881 cheZ -13.56 0.018568 164 -- 190 2 -- 28 chemotaxis regulator protein phosphatase for CheY  
88 0.007723 0.2889 b4403 yjtD -13.82 0.016006 193 -- 211 1 -- 21 putative methyltransferase  
89 0.007733 0.2889 b3426 glpD -8.48 0.239884 186 -- 234 7 -- 64 sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding  
90 0.007755 0.2889 b1852 zwf -12.23 0.039232 191 -- 223 38 -- 65 glucose-6-phosphate 1-dehydrogenase  
91 0.007817 0.2889 b3380 yhfW -10.82 0.081759 179 -- 205 41 -- 67 phosphopentomutase-related metalloenzyme superfamily protein  
92 0.007983 0.2918 b2513 yfgM -8.87 0.203113 70 -- 109 9 -- 65 ancillary SecYEG translocon subunit; putative anti-RcsB factor  
93 0.008233 0.2977 b2669 stpA -8.51 0.236304 244 -- 255 39 -- 50 DNA binding protein nucleoid-associated  
94 0.008385 0.3 b1804 rnd -8.17 0.271836 224 -- 238 41 -- 54 ribonuclease D  
95 0.008588 0.304 b4551 yheV -11.20 0.067476 257 -- 273 47 -- 65 DUF2387 family putative metal-binding protein  
96 0.009004 0.3118 b3981 secE -8.82 0.207803 253 -- 270 42 -- 57 preprotein translocase membrane subunit  
97 0.009098 0.3118 b3221 yhcH -21.73 0.000051 38 -- 71 30 -- 66 DUF386 family protein cupin superfamily  
98 0.009218 0.3118 b3391 hofQ -10.83 0.081241 8 -- 57 7 -- 65 DNA catabolic putative fimbrial transporter  
99 0.009334 0.3118 b0675 umpH -9.49 0.153954 143 -- 172 39 -- 66 UMP phosphatase  
100 0.009417 0.3118 b4363 yjjB -11.70 0.052026 267 -- 280 41 -- 54 DUF3815 family inner membrane protein  
101 0.009525 0.3118 b2101 yegW -12.09 0.042153 47 -- 73 39 -- 66 putative DNA-binding transcriptional regulator  
102 0.009578 0.3118 b1247 oppF -10.09 0.116865 264 -- 290 39 -- 63 oligopeptide ABC transporter ATPase  
103 0.009615 0.3118 b4045 yjbJ -8.83 0.207064 48 -- 67 39 -- 60 stress-induced protein UPF0337 family  
104 0.009649 0.3118 b0910 cmk -9.70 0.140357 282 -- 294 41 -- 53 cytidylate kinase  
105 0.009758 0.3118 b4478 dgoD -14.76 0.009064 185 -- 203 43 -- 60 D-galactonate dehydratase  
106 0.009895 0.3118 b3962 sthA -8.25 0.262922 71 -- 97 8 -- 33 pyridine nucleotide transhydrogenase soluble  
107 0.009921 0.3118 b0836 bssR -14.44 0.011050 12 -- 65 14 -- 65 repressor of biofilm formation by indole transport regulation  
108 0.01004 0.3126 b2422 cysA -10.23 0.108830 144 -- 158 52 -- 72 sulfate/thiosulfate transporter subunit  
109 0.01013 0.3127 b3805 hemC -12.29 0.037947 146 -- 209 1 -- 60 hydroxymethylbilane synthase  
110 0.01026 0.313 b0063 araB -12.48 0.034183 202 -- 260 1 -- 55 L-ribulokinase  
111 0.01033 0.313 b1120 cobB -14.51 0.010573 178 -- 236 7 -- 64 deacetylase of acs and cheY chemotaxis regulator  
112 0.0105 0.3154 b2136 yohD -14.01 0.014269 227 -- 295 6 -- 72 DedA family inner membrane protein  
113 0.01136 0.3326 b3417 malP -12.46 0.034450 250 -- 272 38 -- 60 maltodextrin phosphorylase  
114 0.01136 0.3326 b2203 napB -12.98 0.025868 242 -- 255 39 -- 54 nitrate reductase small cytochrome C550 subunit periplasmic  
115 0.0114 0.3326 b2531 iscR -8.61 0.227442 42 -- 64 8 -- 31 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor  
116 0.0115 0.3326 b3770 ilvE -6.73 0.460342 227 -- 277 1 -- 67 branched-chain amino acid aminotransferase  
117 0.01164 0.3326 b1119 nagK -13.64 0.017780 246 -- 275 42 -- 70 N-acetyl-D-glucosamine kinase  
118 0.01176 0.3326 b3601 mtlR -9.20 0.175568 190 -- 199 44 -- 53 mannitol operon repressor  
119 0.01177 0.3326 b4262 lptG -9.06 0.186805 47 -- 70 7 -- 29 lipopolysaccharide export ABC permease  
120 0.01191 0.3337 b0354 yaiL -10.86 0.080118 189 -- 207 50 -- 67 DUF2058 family protein  
121 0.01216 0.338 b3416 malQ -13.35 0.020947 179 -- 225 13 -- 54 4-alpha-glucanotransferase (amylomaltase)  
122 0.01263 0.3462 b0537 intD -10.49 0.096065 54 -- 80 48 -- 76 DLP12 prophage; putative phage integrase  
123 0.01273 0.3462 b1817 manX -9.41 0.160028 181 -- 191 9 -- 19 fused mannose-specific PTS enzymes: IIA component/IIB component  
124 0.01277 0.3462 b2812 tcdA -10.63 0.089790 208 -- 228 41 -- 66 tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA  
125 0.01291 0.3474 b3006 exbB -11.08 0.071576 189 -- 220 46 -- 66 membrane spanning protein in TonB-ExbB-ExbD complex  
126 0.01341 0.3578 b3572 avtA -7.69 0.327921 259 -- 267 58 -- 66 valine-pyruvate aminotransferase; transaminase C; alanine-valine transaminase  
127 0.01373 0.3614 b0463 acrA -13.78 0.016343 252 -- 289 8 -- 54 multidrug efflux system  
128 0.01375 0.3614 b1271 yciK -9.18 0.177475 2 -- 35 4 -- 52 putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase  
129 0.01395 0.3636 b2314 dedD -15.05 0.007607 192 -- 211 45 -- 65 membrane-anchored periplasmic protein involved in septation  
130 0.01417 0.3654 b3188 sfsB -12.77 0.029182 125 -- 158 30 -- 65 malPQ operon transcriptional activator  
131 0.01428 0.3654 b2099 yegU -10.27 0.106798 246 -- 258 42 -- 54 ADP-ribosylglycohydrolase family protein  
132 0.0144 0.3654 b2381 ypdB -7.98 0.293473 18 -- 39 11 -- 32 response regulator activating yhjX; pyruvate-responsive YpdAB two-component system  
133 0.01445 0.3654 b1260 trpA -8.36 0.252100 71 -- 77 38 -- 44 tryptophan synthase alpha subunit  
134 0.01498 0.3759 b3388 damX -9.22 0.174550 186 -- 204 42 -- 59 cell division protein that binds to the septal ring  
135 0.01531 0.3774 b3224 nanT -10.34 0.103537 56 -- 77 28 -- 54 sialic acid transporter  
136 0.01532 0.3774 b3054 ygiF -8.05 0.285135 192 -- 208 38 -- 53 inorganic triphosphatase  
137 0.01537 0.3774 b0952 pqiC -8.31 0.257066 203 -- 237 17 -- 64 DUF330 family putative lipoprotein  
138 0.01562 0.3807 b1735 chbR -9.56 0.149643 62 -- 73 41 -- 54 repressor of chb operon for N N'-diacetylchitobiose utilization  
139 0.0159 0.3828 b2108 yehA -9.84 0.131393 50 -- 60 55 -- 65 putative fimbrial-like adhesin protein  
140 0.01599 0.3828 b0119 yacL -11.32 0.063485 266 -- 299 25 -- 57 UPF0231 family protein  
141 0.01633 0.3828 b2842 kduD -11.01 0.074109 260 -- 295 38 -- 66 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase; KDG oxidoreductase; 20-ketosteroid reductase b4266 b2774
142 0.01646 0.3828 b2248 rhmR -12.12 0.041559 199 -- 228 39 -- 72 putative DNA-binding transcriptional regulator for the rhm operon b4299
143 0.01651 0.3828 b2793 syd -11.91 0.046390 192 -- 225 39 -- 65 SecY-interacting protein  
144 0.01658 0.3828 b3731 atpC -9.12 0.181998 70 -- 89 6 -- 25 F1 sector of membrane-bound ATP synthase epsilon subunit  
145 0.01667 0.3828 b1835 rsmF -17.85 0.001164 186 -- 211 35 -- 58 16S rRNA m(5)C1407 methyltransferase SAM-dependent  
146 0.01679 0.3828 b2699 recA -5.90 0.590167 190 -- 206 40 -- 58 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor  
147 0.01713 0.3828 b3354 yheU -14.93 0.008191 201 -- 276 7 -- 70 UPF0270 family protein  
148 0.01733 0.3828 b1760 ynjH -7.42 0.362448 2 -- 64 11 -- 71 DUF1496 family protein  
149 0.01777 0.3828 b3024 ygiW -12.90 0.027028 214 -- 237 39 -- 58 hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein  
150 0.01784 0.3828 b2412 zipA -13.80 0.016156 169 -- 198 28 -- 57 FtsZ stabilizer  
151 0.01786 0.3828 b0412 yajI -11.20 0.067280 41 -- 55 41 -- 54 putative lipoprotein  
152 0.01787 0.3828 b1659 ydhB -7.85 0.308650 225 -- 251 41 -- 68 LysR family putative transcriptional regulator  
153 0.01791 0.3828 b2384 ypdE -7.27 0.383330 233 -- 249 39 -- 54 aminopeptidase b4305 b3898
154 0.01792 0.3828 b2610 ffh -8.53 0.234957 246 -- 258 48 -- 60 Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)  
155 0.01799 0.3828 b1446 ydcY -7.41 0.363872 123 -- 175 11 -- 59 DUF2526 family protein  
156 0.01801 0.3828 b1942 fliJ -11.30 0.063944 187 -- 254 7 -- 65 flagellar protein  
157 0.01802 0.3828 b3693 dgoK -7.47 0.356536 125 -- 141 46 -- 60 2-oxo-3-deoxygalactonate kinase  
158 0.01805 0.3828 b0159 mtn -12.15 0.040782 203 -- 232 30 -- 64 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase  
159 0.01815 0.3828 b2418 pdxK -7.58 0.341503 51 -- 77 38 -- 65 pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase  
160 0.01821 0.3828 b0106 hofC -9.30 0.168390 246 -- 262 42 -- 54 assembly protein in type IV pilin biogenesis transmembrane protein  
161 0.01858 0.3864 b3237 argR -5.47 0.658327 53 -- 70 1 -- 21 l-arginine-responsive arginine metabolism regulon transcriptional regulator  
162 0.01861 0.3864 b2280 nuoJ -11.65 0.053319 100 -- 143 1 -- 58 NADH:ubiquinone oxidoreductase membrane subunit J  
163 0.01899 0.3918 b0037 caiC -9.20 0.176089 195 -- 204 42 -- 51 putative crotonobetaine/carnitine-CoA ligase  
164 0.01912 0.392 b0585 fes -11.27 0.064985 233 -- 253 39 -- 56 enterobactin/ferrienterobactin esterase  
165 0.01953 0.3981 b0603 ybdO -12.89 0.027143 166 -- 206 40 -- 73 putative DNA-binding transcriptional regulator  
166 0.01968 0.3987 b0784 moaD -8.29 0.259720 116 -- 144 39 -- 53 molybdopterin synthase small subunit  
167 0.01994 0.3993 b1982 amn -7.06 0.411594 174 -- 215 8 -- 54 AMP nucleosidase  
168 0.01999 0.3993 b2171 yeiP -9.24 0.172435 8 -- 24 39 -- 54 elongation factor P-like protein  
169 0.02007 0.3993 b1680 sufS -8.85 0.205059 78 -- 94 33 -- 48 cysteine desulfurase stimulated by SufE; selenocysteine lyase PLP-dependent  
170 0.02048 0.4033 b3201 lptB -9.27 0.170285 9 -- 55 2 -- 54 lipopolysaccharide export ABC transporter ATPase  
171 0.02062 0.4033 b3192 mlaC -11.25 0.065504 113 -- 124 47 -- 58 ABC transporter maintaining OM lipid asymmetry periplasmic binding protein  
172 0.02065 0.4033 b1015 putP -10.70 0.086688 188 -- 205 52 -- 67 proline:sodium symporter  
173 0.02087 0.4033 b2239 glpQ -12.95 0.026326 256 -- 274 41 -- 66 periplasmic glycerophosphodiester phosphodiesterase  
174 0.02096 0.4033 b3929 rraA -13.95 0.014802 2 -- 21 45 -- 66 ribonuclease E (RNase E) inhibitor protein  
175 0.02099 0.4033 b2913 serA -5.57 0.642321 190 -- 257 5 -- 65 D-3-phosphoglycerate dehydrogenase  
176 0.02144 0.4097 b0948 rlmL -6.91 0.434425 184 -- 201 13 -- 33 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases SAM-dependent  
177 0.02174 0.4127 b1725 yniA -12.81 0.028485 66 -- 113 12 -- 55 fructosamine kinase family protein  
178 0.02184 0.4127 b1466 narW -11.23 0.066200 254 -- 267 42 -- 56 nitrate reductase 2 (NRZ) delta subunit (assembly subunit)  
179 0.02223 0.4143 b2167 fruA -7.15 0.399094 192 -- 200 5 -- 13 fused fructose-specific PTS enzymes: IIBcomponent/IIC components  
180 0.02233 0.4143 b0435 bolA -10.38 0.101210 35 -- 46 39 -- 51 stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC  
181 0.02239 0.4143 b2894 xerD -11.89 0.046874 147 -- 194 9 -- 61 site-specific tyrosine recombinase  
182 0.02271 0.4143 b1686 menI -7.81 0.313804 214 -- 222 57 -- 65 1 4-dihydroxy-2-naphthoyl-CoA hydrolase  
183 0.02285 0.4143 b3262 yhdJ -12.72 0.029953 3 -- 23 44 -- 69 DNA adenine methyltransferase SAM-dependent  
184 0.02285 0.4143 b4312 fimB -10.59 0.091292 169 -- 221 1 -- 58 tyrosine recombinase/inversion of on/off regulator of fimA  
185 0.02287 0.4143 b3460 livJ -12.49 0.033972 245 -- 276 28 -- 54 branched-chain amino acid ABC transporter periplasmic binding protein  
186 0.02292 0.4143 b2717 hycI -8.63 0.225035 220 -- 254 38 -- 70 protease involved in processing C-terminal end of HycE  
187 0.02306 0.4145 b1854 pykA -9.88 0.128920 243 -- 268 12 -- 43 pyruvate kinase II  
188 0.02326 0.4145 b2501 ppk -10.84 0.080977 186 -- 203 48 -- 65 polyphosphate kinase component of RNA degradosome  
189 0.02329 0.4145 b1823 cspC -8.37 0.250499 214 -- 248 8 -- 63 stress protein member of the CspA-family  
190 0.0237 0.4194 b0428 cyoE -16.93 0.002220 1 -- 26 41 -- 65 protoheme IX farnesyltransferase  
191 0.02382 0.4194 b4567 yjjZ -11.31 0.063816 288 -- 298 51 -- 61 uncharacterized protein  
192 0.02397 0.4199 b2465 tktB -14.96 0.008038 72 -- 123 6 -- 68 transketolase 2 thiamine triphosphate-binding  
193 0.02433 0.4239 b1125 potB -7.71 0.326143 48 -- 60 50 -- 66 spermidine/putrescine ABC transporter permease  
194 0.0246 0.4256 b0211 mltD -5.59 0.639593 30 -- 36 59 -- 65 putative membrane-bound lytic murein transglycosylase D  
195 0.02483 0.4256 b2905 gcvT -11.07 0.071827 75 -- 92 41 -- 59 aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex  
196 0.02524 0.4256 b1805 fadD -8.19 0.269381 280 -- 298 55 -- 72 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)  
197 0.02537 0.4256 b3317 rplB -11.01 0.074049 182 -- 205 41 -- 62 50S ribosomal subunit protein L2  
198 0.02539 0.4256 b1624 ydgJ -9.27 0.170491 217 -- 246 45 -- 70 putative oxidoreductase  
199 0.02539 0.4256 b2094 gatA -8.91 0.199733 27 -- 47 1 -- 21 galactitol-specific enzyme IIA component of PTS  
200 0.0254 0.4256 b0975 hyaD -14.05 0.013908 10 -- 31 42 -- 66 hydrogenase 1 maturation protease  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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