| 181 |
0.02239 |
0.4143 |
b2894 |
xerD |
-11.89 |
0.046874 |
147 -- 194 |
9 -- 61 |
site-specific tyrosine recombinase |
|
_____________146_____________________________________________________195\n_____________|_______________________________________________________|\n5'-ACC...GCUUU_____C____________AA___A_______UC_______GA_____C_______GCGCA...UGU-3'\n______________AGUCA__GGCA___CAAU__GGC_UAAUGGA_____AAAU__GUGAC_AUAAGGG\n______________|:|||__||||___||||__|||_:||::||_____||||__|||||_||||:||\n______________UUAGU__CCGU___GUUA__CCG_GUUGUCU_____UUUA__CACUG_UAUUUCC\n3'-UUU...ACCUU_____CA____UAC_________G_______UUUAU____GA_____U_______GUAUAUUG-5'\n_____________|_______________________________________________________|\n_____________62______________________________________________________8\n |
188 -- 194 |
9 -- 15 |
-33.0704 kcal/mol |
10.0398 kcal/mol |
11.1358 kcal/mol |
146 195@LB@ | |@LB@5'-ACC...GCUUU C AA A UC GA C GCGCA...UGU-3'@LB@ AGUCA GGCA CAAU GGC UAAUGGA AAAU GUGAC AUAAGGG@LB@ |:||| |||| |||| ||| :||::|| |||| ||||| ||||:||@LB@ UUAGU CCGU GUUA CCG GUUGUCU UUUA CACUG UAUUUCC@LB@3'-UUU...ACCUU CA UAC G UUUAU GA U GUAUAUUG-5'@LB@ | |@LB@ 62 8@LB@@LB@@LB@Energy -11.89 kcal/mol@LB@Hybridization Energy -33.0704 kcal/mol@LB@Unfolding Energy - mRNA 10.0398 kcal/mol@LB@Unfolding Energy - sRNA 11.1358 kcal/mol@LB@@LB@Position - mRNA 147 -- 194@LB@Position - sRNA 9 -- 61@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 182 |
0.02271 |
0.4143 |
b1686 |
menI |
-7.81 |
0.313804 |
214 -- 222 |
57 -- 65 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________213_______223\n_____________|_________|\n5'-GGC...GAAAC_________CCCUG...AUG-3'\n______________GGAAAAUCA\n______________|||||||||\n______________CCUUUUAGU\n3'-UUU...UACAA_________CACCG...UUG-5'\n_____________|_________|\n_____________66________56\n |
216 -- 222 |
57 -- 63 |
-11.126 kcal/mol |
2.47866 kcal/mol |
0.839876 kcal/mol |
213 223@LB@ | |@LB@5'-GGC...GAAAC CCCUG...AUG-3'@LB@ GGAAAAUCA@LB@ |||||||||@LB@ CCUUUUAGU@LB@3'-UUU...UACAA CACCG...UUG-5'@LB@ | |@LB@ 66 56@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -11.126 kcal/mol@LB@Unfolding Energy - mRNA 2.47866 kcal/mol@LB@Unfolding Energy - sRNA 0.839876 kcal/mol@LB@@LB@Position - mRNA 214 -- 222@LB@Position - sRNA 57 -- 65@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 183 |
0.02285 |
0.4143 |
b3262 |
yhdJ |
-12.72 |
0.029953 |
3 -- 23 |
44 -- 69 |
DNA adenine methyltransferase SAM-dependent |
|
_____________2__________________________24\n_____________|__________________________|\n_________5'-CC__________________________ACACC...GUG-3'\n______________UGUUGGA____CA_UGGUGAUGCAAU\n______________|||||||____||_|||::|||||||\n______________ACAACCU____GU_ACCGUUACGUUA\n3'-UUU...AAUAU_______UUUA__C____________CCGGG...UUG-5'\n_____________|__________________________|\n_____________70_________________________43\n |
17 -- 23 |
44 -- 50 |
-23.8856 kcal/mol |
6.69358 kcal/mol |
4.47358 kcal/mol |
2 24@LB@ | |@LB@ 5'-CC ACACC...GUG-3'@LB@ UGUUGGA CA UGGUGAUGCAAU@LB@ ||||||| || |||::|||||||@LB@ ACAACCU GU ACCGUUACGUUA@LB@3'-UUU...AAUAU UUUA C CCGGG...UUG-5'@LB@ | |@LB@ 70 43@LB@@LB@@LB@Energy -12.72 kcal/mol@LB@Hybridization Energy -23.8856 kcal/mol@LB@Unfolding Energy - mRNA 6.69358 kcal/mol@LB@Unfolding Energy - sRNA 4.47358 kcal/mol@LB@@LB@Position - mRNA 3 -- 23@LB@Position - sRNA 44 -- 69@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 184 |
0.02285 |
0.4143 |
b4312 |
fimB |
-10.59 |
0.091292 |
169 -- 221 |
1 -- 58 |
tyrosine recombinase/inversion of on/off regulator of fimA |
|
_____________168________________________________________________________________222\n_____________|__________________________________________________________________|\n5'-AUG...ACAGC_____C___UC______UA_____G________________________AGAAUA____UG_____AAAAA...GUA-3'\n______________UAGUG_GCG__UGUAAU____UAA_GGAAAA___________ACGAUGA______AGGC__AUAAC\n______________:||||_||:__||:|||____:||_:|||||___________||:||:|______||||__|||||\n______________GUCAC_CGU__ACGUUA____GUU_UCUUUU___________UGUUAUU______UCCG__UAUUG\n3'-UUU...UUUUA_________U_______CCGG___G______AUUUUAGACAC_________________UA_____-5'\n_____________|_________________________________________________________________|\n_____________59________________________________________________________________1\n |
198 -- 204 |
12 -- 18 |
-31.4649 kcal/mol |
8.72248 kcal/mol |
12.1476 kcal/mol |
168 222@LB@ | |@LB@5'-AUG...ACAGC C UC UA G AGAAUA UG AAAAA...GUA-3'@LB@ UAGUG GCG UGUAAU UAA GGAAAA ACGAUGA AGGC AUAAC@LB@ :|||| ||: ||:||| :|| :||||| ||:||:| |||| |||||@LB@ GUCAC CGU ACGUUA GUU UCUUUU UGUUAUU UCCG UAUUG@LB@3'-UUU...UUUUA U CCGG G AUUUUAGACAC UA -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -31.4649 kcal/mol@LB@Unfolding Energy - mRNA 8.72248 kcal/mol@LB@Unfolding Energy - sRNA 12.1476 kcal/mol@LB@@LB@Position - mRNA 169 -- 221@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 185 |
0.02287 |
0.4143 |
b3460 |
livJ |
-12.49 |
0.033972 |
245 -- 276 |
28 -- 54 |
branched-chain amino acid ABC transporter periplasmic binding protein |
|
_____________244______________________________277\n_____________|________________________________|\n5'-AAU...GCGCU____UUCA___AU_______U___________UUAAA...CAA-3'\n______________GGCA____GCA__AUGGCUC_GGCAGAAGAUA\n______________||||____|||__|||||:|_::|||||:|||\n______________CCGU____CGU__UACCGGG_UUGUCUUUUAU\n3'-UUU...AGUCA____UA__________________________UUUAG...UUG-5'\n_____________|________________________________|\n_____________55_______________________________27\n |
258 -- 264 |
39 -- 45 |
-29.3573 kcal/mol |
7.88401 kcal/mol |
8.98285 kcal/mol |
244 277@LB@ | |@LB@5'-AAU...GCGCU UUCA AU U UUAAA...CAA-3'@LB@ GGCA GCA AUGGCUC GGCAGAAGAUA@LB@ |||| ||| |||||:| ::|||||:|||@LB@ CCGU CGU UACCGGG UUGUCUUUUAU@LB@3'-UUU...AGUCA UA UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -29.3573 kcal/mol@LB@Unfolding Energy - mRNA 7.88401 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 245 -- 276@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 186 |
0.02292 |
0.4143 |
b2717 |
hycI |
-8.63 |
0.225035 |
220 -- 254 |
38 -- 70 |
protease involved in processing C-terminal end of HycE |
|
_____________219___________________________________255\n_____________|_____________________________________|\n5'-AGC...ACUCU_______C__UAG__UGAUG______________G__GGUCC...ACU-3'\n______________GUGUUGG_AA___CA_____GGCGAUG__AUGGC_CA\n______________:||||||_||___||_____|||:|||__|||||_||\n______________UACAACC_UU___GU_____CCGUUAC__UACCG_GU\n3'-UUU...AAAUA__________UUA__CA__________GU_____G__UGUCU...UUG-5'\n_____________|_____________________________________|\n_____________71____________________________________37\n |
240 -- 246 |
48 -- 54 |
-27.127 kcal/mol |
11.1995 kcal/mol |
7.29667 kcal/mol |
219 255@LB@ | |@LB@5'-AGC...ACUCU C UAG UGAUG G GGUCC...ACU-3'@LB@ GUGUUGG AA CA GGCGAUG AUGGC CA@LB@ :|||||| || || |||:||| ||||| ||@LB@ UACAACC UU GU CCGUUAC UACCG GU@LB@3'-UUU...AAAUA UUA CA GU G UGUCU...UUG-5'@LB@ | |@LB@ 71 37@LB@@LB@@LB@Energy -8.63 kcal/mol@LB@Hybridization Energy -27.127 kcal/mol@LB@Unfolding Energy - mRNA 11.1995 kcal/mol@LB@Unfolding Energy - sRNA 7.29667 kcal/mol@LB@@LB@Position - mRNA 220 -- 254@LB@Position - sRNA 38 -- 70@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 187 |
0.02306 |
0.4145 |
b1854 |
pykA |
-9.88 |
0.128920 |
243 -- 268 |
12 -- 43 |
pyruvate kinase II |
|
_____________242______________________________269\n_____________|________________________________|\n5'-GAA...CGUUA_________AC____________C________UCUUG...ACG-3'\n______________GGCCCAGCA_______AGAUC_G_GAUAAUAA\n______________||||||:||_______|:|||_|_||:|||||\n______________CCGGGUUGU_______UUUAG_C_CUGUUAUU\n3'-UUU...CGUUA_________CUUUUAU_____A_A________UCCGU...UUG-5'\n_____________|________________________________|\n_____________44_______________________________11\n |
262 -- 268 |
12 -- 18 |
-24.7448 kcal/mol |
4.16838 kcal/mol |
10.6985 kcal/mol |
242 269@LB@ | |@LB@5'-GAA...CGUUA AC C UCUUG...ACG-3'@LB@ GGCCCAGCA AGAUC G GAUAAUAA@LB@ ||||||:|| |:||| | ||:|||||@LB@ CCGGGUUGU UUUAG C CUGUUAUU@LB@3'-UUU...CGUUA CUUUUAU A A UCCGU...UUG-5'@LB@ | |@LB@ 44 11@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -24.7448 kcal/mol@LB@Unfolding Energy - mRNA 4.16838 kcal/mol@LB@Unfolding Energy - sRNA 10.6985 kcal/mol@LB@@LB@Position - mRNA 243 -- 268@LB@Position - sRNA 12 -- 43@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 188 |
0.02326 |
0.4145 |
b2501 |
ppk |
-10.84 |
0.080977 |
186 -- 203 |
48 -- 65 |
polyphosphate kinase component of RNA degradosome |
|
_____________185________________204\n_____________|__________________|\n5'-CGC...AAAAC____UAAA__________GGUCA...UUG-3'\n______________GGAG____AGUGGUAAUG\n______________|||:____|||||:||||\n______________CCUU____UCACCGUUAC\n3'-UUU...UACAA____UUAG__________GUUAC...UUG-5'\n_____________|__________________|\n_____________66_________________47\n |
197 -- 203 |
48 -- 54 |
-18.775 kcal/mol |
3.93073 kcal/mol |
4.00814 kcal/mol |
185 204@LB@ | |@LB@5'-CGC...AAAAC UAAA GGUCA...UUG-3'@LB@ GGAG AGUGGUAAUG@LB@ |||: |||||:||||@LB@ CCUU UCACCGUUAC@LB@3'-UUU...UACAA UUAG GUUAC...UUG-5'@LB@ | |@LB@ 66 47@LB@@LB@@LB@Energy -10.84 kcal/mol@LB@Hybridization Energy -18.775 kcal/mol@LB@Unfolding Energy - mRNA 3.93073 kcal/mol@LB@Unfolding Energy - sRNA 4.00814 kcal/mol@LB@@LB@Position - mRNA 186 -- 203@LB@Position - sRNA 48 -- 65@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 189 |
0.02329 |
0.4145 |
b1823 |
cspC |
-8.37 |
0.250499 |
214 -- 248 |
8 -- 63 |
stress protein member of the CspA-family |
|
_____________213______________________________________________________249\n_____________|________________________________________________________|\n5'-UAU...GAUUA____________UA__________________________________________UUUGG...UCU-3'\n______________AAGGUCA__GGU_____AGUGGUUCAAC________GAGUC________UAAAGGU\n______________||::|||__||:_____|:|||::||||________:|:||________||||||:\n______________UUUUAGU__CCG_____UUACCGGGUUG________UUUAG________AUUUCCG\n3'-UUU...CAACC_______CA___UUACG___________UCUUUUAU_____ACACUGUU_______UAUAUUG-5'\n_____________|________________________________________________________|\n_____________64_______________________________________________________7\n |
242 -- 248 |
8 -- 14 |
-25.9028 kcal/mol |
5.39828 kcal/mol |
12.1311 kcal/mol |
213 249@LB@ | |@LB@5'-UAU...GAUUA UA UUUGG...UCU-3'@LB@ AAGGUCA GGU AGUGGUUCAAC GAGUC UAAAGGU@LB@ ||::||| ||: |:|||::|||| :|:|| ||||||:@LB@ UUUUAGU CCG UUACCGGGUUG UUUAG AUUUCCG@LB@3'-UUU...CAACC CA UUACG UCUUUUAU ACACUGUU UAUAUUG-5'@LB@ | |@LB@ 64 7@LB@@LB@@LB@Energy -8.37 kcal/mol@LB@Hybridization Energy -25.9028 kcal/mol@LB@Unfolding Energy - mRNA 5.39828 kcal/mol@LB@Unfolding Energy - sRNA 12.1311 kcal/mol@LB@@LB@Position - mRNA 214 -- 248@LB@Position - sRNA 8 -- 63@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 190 |
0.0237 |
0.4194 |
b0428 |
cyoE |
-16.93 |
0.002220 |
1 -- 26 |
41 -- 65 |
protoheme IX farnesyltransferase |
|
______________1__________________________27\n______________|__________________________|\n___________5'-____C____C________G________ACAGG...GCA-3'\n______________GGAA_AAUC__UGGCAAU_GCAGUGGU\n______________||||_||||__|||||||_|||:|||:\n______________CCUU_UUAG__ACCGUUA_CGUUACCG\n3'-UUU...UACAA_________UC________________GGUUG...UUG-5'\n_____________|___________________________|\n_____________66__________________________40\n |
20 -- 26 |
41 -- 47 |
-29.3415 kcal/mol |
6.59984 kcal/mol |
5.80973 kcal/mol |
1 27@LB@ | |@LB@ 5'- C C G ACAGG...GCA-3'@LB@ GGAA AAUC UGGCAAU GCAGUGGU@LB@ |||| |||| ||||||| |||:|||:@LB@ CCUU UUAG ACCGUUA CGUUACCG@LB@3'-UUU...UACAA UC GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -29.3415 kcal/mol@LB@Unfolding Energy - mRNA 6.59984 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 1 -- 26@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 41 -- 47@LB@ |
