| 21 |
0.0009862 |
0.1579 |
b2572 |
rseA |
-10.60 |
0.091224 |
9 -- 29 |
44 -- 65 |
anti-sigma factor |
|
_____________8______________________30\n_____________|______________________|\n___5'-UCCCUCCC________UAC____UG_____AACCU...GGG-3'\n______________GGAAGAUU____GCA__GCAAU\n______________||||:||:____|||__|||||\n______________CCUUUUAG____CGU__CGUUA\n3'-UUU...UACAA________UCAC___UA_____CCGGG...UUG-5'\n_____________|______________________|\n_____________66_____________________43\n |
10 -- 16 |
58 -- 64 |
-18.0609 kcal/mol |
3.14057 kcal/mol |
4.32401 kcal/mol |
8 30@LB@ | |@LB@ 5'-UCCCUCCC UAC UG AACCU...GGG-3'@LB@ GGAAGAUU GCA GCAAU@LB@ ||||:||: ||| |||||@LB@ CCUUUUAG CGU CGUUA@LB@3'-UUU...UACAA UCAC UA CCGGG...UUG-5'@LB@ | |@LB@ 66 43@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -18.0609 kcal/mol@LB@Unfolding Energy - mRNA 3.14057 kcal/mol@LB@Unfolding Energy - sRNA 4.32401 kcal/mol@LB@@LB@Position - mRNA 9 -- 29@LB@Position - sRNA 44 -- 65@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 22 |
0.001182 |
0.1807 |
b3642 |
pyrE |
-13.24 |
0.022299 |
74 -- 119 |
8 -- 48 |
orotate phosphoribosyltransferase |
|
_____________73______________________________________________120\n_____________|_______________________________________________|\n5'-CGG...UGUUG__UC________G_____UC______CAU___AGC____CA______GGCGC...AUU-3'\n______________GC__UGGCCCGA_GGGAA___GAAUC___UGU___GACG__GAAGGC\n______________||__||||||:|_:|:||___:||||___|||___|||:__:|||||\n______________CG__ACCGGGUU_UCUUU___UUUAG___ACA___CUGU__UUUCCG\n3'-UUU...CGUUA__UU________G_____UAU__________________UA______UAUAUUG-5'\n_____________|_______________________________________________|\n_____________49______________________________________________7\n |
79 -- 85 |
37 -- 43 |
-37.0606 kcal/mol |
11.836 kcal/mol |
11.9819 kcal/mol |
73 120@LB@ | |@LB@5'-CGG...UGUUG UC G UC CAU AGC CA GGCGC...AUU-3'@LB@ GC UGGCCCGA GGGAA GAAUC UGU GACG GAAGGC@LB@ || ||||||:| :|:|| :|||| ||| |||: :|||||@LB@ CG ACCGGGUU UCUUU UUUAG ACA CUGU UUUCCG@LB@3'-UUU...CGUUA UU G UAU UA UAUAUUG-5'@LB@ | |@LB@ 49 7@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -37.0606 kcal/mol@LB@Unfolding Energy - mRNA 11.836 kcal/mol@LB@Unfolding Energy - sRNA 11.9819 kcal/mol@LB@@LB@Position - mRNA 74 -- 119@LB@Position - sRNA 8 -- 48@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 23 |
0.001281 |
0.182 |
b3541 |
dppD |
-11.06 |
0.072175 |
116 -- 139 |
1 -- 23 |
dipeptide/heme ABC transporter ATPas |
|
_____________115______________________140\n_____________|________________________|\n5'-UUU...CGAUC___C________CU_____U____CUGAU...GCG-3'\n______________CUG_UGACGGUG__GGCAU_UAAC\n______________|||_||||::|:__|||||_||||\n______________GAC_ACUGUUAU__CCGUA_AUUG\n3'-UUU...UUUUA____________UU_____U____-5'\n_____________|_______________________|\n_____________24______________________1\n |
121 -- 127 |
13 -- 19 |
-21.9665 kcal/mol |
6.28511 kcal/mol |
4.61692 kcal/mol |
115 140@LB@ | |@LB@5'-UUU...CGAUC C CU U CUGAU...GCG-3'@LB@ CUG UGACGGUG GGCAU UAAC@LB@ ||| ||||::|: ||||| ||||@LB@ GAC ACUGUUAU CCGUA AUUG@LB@3'-UUU...UUUUA UU U -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -21.9665 kcal/mol@LB@Unfolding Energy - mRNA 6.28511 kcal/mol@LB@Unfolding Energy - sRNA 4.61692 kcal/mol@LB@@LB@Position - mRNA 116 -- 139@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 24 |
0.001299 |
0.182 |
b1267 |
yciO |
-12.11 |
0.041783 |
4 -- 24 |
36 -- 58 |
putative RNA binding protein |
|
_____________3_______________________25\n_____________|_______________________|\n________5'-GCG_____C_________C_______GAACG...CAA-3'\n______________CAGUG_CA__GCAAU_GCCCAAU\n______________|||||_||__|||||_||||||:\n______________GUCAC_GU__CGUUA_CGGGUUG\n3'-UUU...UUUUA_____C__UA_____C_______UCUUU...UUG-5'\n_____________|_______________________|\n_____________59______________________35\n |
18 -- 24 |
36 -- 42 |
-24.2706 kcal/mol |
1.86377 kcal/mol |
10.2972 kcal/mol |
3 25@LB@ | |@LB@ 5'-GCG C C GAACG...CAA-3'@LB@ CAGUG CA GCAAU GCCCAAU@LB@ ||||| || ||||| ||||||:@LB@ GUCAC GU CGUUA CGGGUUG@LB@3'-UUU...UUUUA C UA C UCUUU...UUG-5'@LB@ | |@LB@ 59 35@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -24.2706 kcal/mol@LB@Unfolding Energy - mRNA 1.86377 kcal/mol@LB@Unfolding Energy - sRNA 10.2972 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 36 -- 58@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 25 |
0.001369 |
0.1841 |
b2599 |
pheA |
-10.09 |
0.116571 |
180 -- 205 |
1 -- 20 |
chorismate mutase and prephenate dehydratase P-protein |
|
_____________179________________________206\n_____________|__________________________|\n5'-UGA...UUUAU______CAA_______ACAC______AUCGG...UCG-3'\n______________UGAUAA___AAAGGCA____UAUGAC\n______________|||:||___|||||||____|||:||\n______________ACUGUU___UUUCCGU____AUAUUG\n3'-UUU...UAGAC______A___________________-5'\n_____________|_________________________|\n_____________21________________________1\n |
189 -- 195 |
7 -- 13 |
-16.49 kcal/mol |
2.17136 kcal/mol |
4.22784 kcal/mol |
179 206@LB@ | |@LB@5'-UGA...UUUAU CAA ACAC AUCGG...UCG-3'@LB@ UGAUAA AAAGGCA UAUGAC@LB@ |||:|| ||||||| |||:||@LB@ ACUGUU UUUCCGU AUAUUG@LB@3'-UUU...UAGAC A -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -16.49 kcal/mol@LB@Unfolding Energy - mRNA 2.17136 kcal/mol@LB@Unfolding Energy - sRNA 4.22784 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 26 |
0.00144 |
0.1863 |
b4406 |
yaeP |
-8.75 |
0.213688 |
187 -- 204 |
2 -- 20 |
UPF0253 family protein |
|
_____________186_________________205\n_____________|___________________|\n5'-ACC...AGUGC_____G_____________AAAAA...UGC-3'\n______________UGACA__GAGGGCAUGUGG\n______________|||||__:|:|||||:|::\n______________ACUGU__UUUCCGUAUAUU\n3'-UUU...UAGAC_____UA____________G-5'\n_____________|___________________|\n_____________21__________________1\n |
197 -- 203 |
3 -- 9 |
-20.0716 kcal/mol |
7.09254 kcal/mol |
4.22649 kcal/mol |
186 205@LB@ | |@LB@5'-ACC...AGUGC G AAAAA...UGC-3'@LB@ UGACA GAGGGCAUGUGG@LB@ ||||| :|:|||||:|::@LB@ ACUGU UUUCCGUAUAUU@LB@3'-UUU...UAGAC UA G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -20.0716 kcal/mol@LB@Unfolding Energy - mRNA 7.09254 kcal/mol@LB@Unfolding Energy - sRNA 4.22649 kcal/mol@LB@@LB@Position - mRNA 187 -- 204@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 27 |
0.001616 |
0.2012 |
b0085 |
murE |
-13.53 |
0.018874 |
165 -- 198 |
1 -- 33 |
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase |
|
_____________164_________________________________199\n_____________|___________________________________|\n5'-UGC...CGAUA_________________U___C______AGGG___AGGUG...CGG-3'\n______________AAAAU_GAAUUUGUGAU_AAU_AAGGCG____GAC\n______________|||||_:|||:|||||:_|||_|||||:____:||\n______________UUUUA_UUUAGACACUG_UUA_UUCCGU____UUG\n3'-UUU...UUGUC_____U_______________U______AUA____-5'\n_____________|__________________________________|\n_____________34_________________________________1\n |
174 -- 180 |
17 -- 23 |
-22.2929 kcal/mol |
3.71145 kcal/mol |
5.04823 kcal/mol |
164 199@LB@ | |@LB@5'-UGC...CGAUA U C AGGG AGGUG...CGG-3'@LB@ AAAAU GAAUUUGUGAU AAU AAGGCG GAC@LB@ ||||| :|||:|||||: ||| |||||: :||@LB@ UUUUA UUUAGACACUG UUA UUCCGU UUG@LB@3'-UUU...UUGUC U U AUA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -22.2929 kcal/mol@LB@Unfolding Energy - mRNA 3.71145 kcal/mol@LB@Unfolding Energy - sRNA 5.04823 kcal/mol@LB@@LB@Position - mRNA 165 -- 198@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 28 |
0.001683 |
0.2021 |
b0166 |
dapD |
-9.25 |
0.172213 |
119 -- 166 |
9 -- 65 |
2 3 4 5-tetrahydropyridine-2-carboxylate N-succinyltransferase |
|
_____________118___________________________________________________________167\n_____________|_____________________________________________________________|\n5'-UUG...CAGCA_____UGC_____C_______A___A_____UC______________CAA___________GUGAU...AGG-3'\n______________GGAAG___AUCAG_GGU__UG_CAG_GGCCC____________AAUC____ACGAUAAAGG\n______________||||:___|||||_||:__||_||:_|||||____________||||____||:|||||||\n______________CCUUU___UAGUC_CCG__AC_GUU_CCGGG____________UUAG____UGUUAUUUCC\n3'-UUU...UACAA_____________A___UU______A_____UUGUCUUUUAUU____ACAC__________GUAUAUUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________8\n |
160 -- 166 |
9 -- 15 |
-36.4613 kcal/mol |
16.0785 kcal/mol |
11.1365 kcal/mol |
118 167@LB@ | |@LB@5'-UUG...CAGCA UGC C A A UC CAA GUGAU...AGG-3'@LB@ GGAAG AUCAG GGU UG CAG GGCCC AAUC ACGAUAAAGG@LB@ ||||: ||||| ||: || ||: ||||| |||| ||:|||||||@LB@ CCUUU UAGUC CCG AC GUU CCGGG UUAG UGUUAUUUCC@LB@3'-UUU...UACAA A UU A UUGUCUUUUAUU ACAC GUAUAUUG-5'@LB@ | |@LB@ 66 8@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -36.4613 kcal/mol@LB@Unfolding Energy - mRNA 16.0785 kcal/mol@LB@Unfolding Energy - sRNA 11.1365 kcal/mol@LB@@LB@Position - mRNA 119 -- 166@LB@Position - sRNA 9 -- 65@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 29 |
0.001819 |
0.2065 |
b3648 |
gmk |
-8.89 |
0.201842 |
236 -- 243 |
51 -- 58 |
guanylate kinase |
|
_____________235______244\n_____________|________|\n5'-GUG...GCCCC________CGGGU...CCC-3'\n______________CAGUGGCG\n______________|||||||:\n______________GUCACCGU\n3'-UUU...UUUUA________UACGU...UUG-5'\n_____________|________|\n_____________59_______50\n |
237 -- 243 |
51 -- 57 |
-13.8917 kcal/mol |
2.3096 kcal/mol |
2.69685 kcal/mol |
235 244@LB@ | |@LB@5'-GUG...GCCCC CGGGU...CCC-3'@LB@ CAGUGGCG@LB@ |||||||:@LB@ GUCACCGU@LB@3'-UUU...UUUUA UACGU...UUG-5'@LB@ | |@LB@ 59 50@LB@@LB@@LB@Energy -8.89 kcal/mol@LB@Hybridization Energy -13.8917 kcal/mol@LB@Unfolding Energy - mRNA 2.3096 kcal/mol@LB@Unfolding Energy - sRNA 2.69685 kcal/mol@LB@@LB@Position - mRNA 236 -- 243@LB@Position - sRNA 51 -- 58@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 30 |
0.001842 |
0.2065 |
b3574 |
yiaJ |
-8.97 |
0.194276 |
228 -- 279 |
20 -- 64 |
transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon |
|
_____________227_____________________________________________________280\n_____________|_______________________________________________________|\n5'-CCC...AAAAA_____CG__A___________GAAAAAGAGC______C______CC_________UUCGC...UUG-3'\n______________GAGAA__AG_UGGC___GCAG__________GUCCAG_CGGAAG__AGAGUCUGU\n______________||:||__||_||||___|||:__________|:|||:_|:|||:__|:|:|||||\n______________CUUUU__UC_ACCG___CGUU__________CGGGUU_GUCUUU__UUUUAGACA\n3'-UUU...ACAAC_____AG_______UUA____AC_____________________UA_________CUGUU...UUG-5'\n_____________|_______________________________________________________|\n_____________65______________________________________________________19\n |
273 -- 279 |
20 -- 26 |
-33.3994 kcal/mol |
13.3805 kcal/mol |
11.0456 kcal/mol |
227 280@LB@ | |@LB@5'-CCC...AAAAA CG A GAAAAAGAGC C CC UUCGC...UUG-3'@LB@ GAGAA AG UGGC GCAG GUCCAG CGGAAG AGAGUCUGU@LB@ ||:|| || |||| |||: |:|||: |:|||: |:|:|||||@LB@ CUUUU UC ACCG CGUU CGGGUU GUCUUU UUUUAGACA@LB@3'-UUU...ACAAC AG UUA AC UA CUGUU...UUG-5'@LB@ | |@LB@ 65 19@LB@@LB@@LB@Energy -8.97 kcal/mol@LB@Hybridization Energy -33.3994 kcal/mol@LB@Unfolding Energy - mRNA 13.3805 kcal/mol@LB@Unfolding Energy - sRNA 11.0456 kcal/mol@LB@@LB@Position - mRNA 228 -- 279@LB@Position - sRNA 20 -- 64@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 20 -- 26@LB@ |
