Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 7120457

Input and runtime details for job 7120457 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 7120457 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:35:08 CET 2014
?Processing Started@ Mon Oct 27 21:33:06 CET 2014
?CopraRNA Finished & Post-Processing@ Tue Oct 28 03:07:59 CET 2014
?Post-Processing Finished@ Tue Oct 28 03:08:00 CET 2014
?Job Completed@ Tue Oct 28 03:08:11 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=7120457&toolName=CopraRNA ( 30 days expiry )

The job description you specified

LhrA2

Output download complete results [zip]

Downloadable files

[csv]
[txt]
[txt]
[png] [pdf] [ps]
[png] [pdf] [ps]
[html] [pdf]
[txt] [svg]


heatmap

? Conserved, identified interactions for NC_003210 Listeria monocytogenes EGD-e

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 2.2e-05 0.06954 lmo2681 kdpB -18.65 0.000146 185 -- 204 154 -- 173 potassium-transporting ATPase subunit B   0
2 9.419e-05 0.104 lmo2330 N/A -15.77 0.002358 195 -- 205 197 -- 207     2
3 9.869e-05 0.104 lmo1883 N/A -16.81 0.000933 197 -- 224 145 -- 170 chitinase   0
4 0.0002245 0.1774 lmo1666 N/A -15.90 0.002105 194 -- 207 157 -- 170 peptidoglycan-linked protein   1
5 0.0003619 0.2288 lmo0196 N/A -16.22 0.001593 240 -- 256 156 -- 173 regulatory protein SpoVG   0
6 0.0007842 0.3677 lmo1187 N/A -14.29 0.007825 139 -- 171 154 -- 183 ethanolamine utilization protein EutQ   0
7 0.0008143 0.3677 lmo1666 N/A -15.90 0.002105 194 -- 207 157 -- 170 peptidoglycan-linked protein   2
8 0.001036 0.4093 lmo2078 N/A -15.73 0.002443 151 -- 240 154 -- 233     0
9 0.001644 0.5523 lmo0040 N/A -14.99 0.004515 52 -- 100 171 -- 220 agmatine deiminase   1
10 0.001747 0.5523 lmo1386 N/A -16.09 0.001786 2 -- 37 155 -- 186 DNA translocase   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1