161 |
0.04429 |
0.7375 |
lmo0588 |
N/A |
-15.80 |
0.069486 |
3 -- 42 |
156 -- 202 |
DNA photolyase |
|
_____________2____________43\n_____________|____________|\n5'-UUG...CUUAU____________UAUGA...AAG-3'\n______________GUGGAUGAAAGC\n______________:||:||||||:|\n______________UACUUACUUUUG\n3'-GUU...UACUC____________UUUAU...GGA-5'\n_____________|____________|\n_____________203__________155\n |
36 -- 42 |
156 -- 162 |
-13.6691 kcal/mol |
1.75048 kcal/mol |
0.849227 kcal/mol |
2 43@LB@ | |@LB@5'-UUG...CUUAU UAUGA...AAG-3'@LB@ GUGGAUGAAAGC@LB@ :||:||||||:|@LB@ UACUUACUUUUG@LB@3'-GUU...UACUC UUUAU...GGA-5'@LB@ | |@LB@ 203 155@LB@@LB@@LB@Energy -15.80 kcal/mol@LB@Hybridization Energy -13.6691 kcal/mol@LB@Unfolding Energy - mRNA 1.75048 kcal/mol@LB@Unfolding Energy - sRNA 0.849227 kcal/mol@LB@@LB@Position - mRNA 3 -- 42@LB@Position - sRNA 156 -- 202@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 156 -- 162@LB@ |
162 |
0.04462 |
0.7375 |
lmo2840 |
N/A |
-13.73 |
0.161226 |
169 -- 225 |
174 -- 208 |
sucrose phosphorylase |
|
_____________168____________226\n_____________|______________|\n5'-UUU...AUAUU_______UG_____GAAUU...AUA-3'\n______________UAGCGGG__AUGAG\n______________||:||||__|||||\n______________AUUGCCC__UACUC\n3'-GUU...UACGU______________CGUAU...GGA-5'\n_____________|______________|\n_____________209____________173\n |
169 -- 175 |
202 -- 208 |
-13.6832 kcal/mol |
2.78278 kcal/mol |
0.386761 kcal/mol |
168 226@LB@ | |@LB@5'-UUU...AUAUU UG GAAUU...AUA-3'@LB@ UAGCGGG AUGAG@LB@ ||:|||| |||||@LB@ AUUGCCC UACUC@LB@3'-GUU...UACGU CGUAU...GGA-5'@LB@ | |@LB@ 209 173@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -13.6832 kcal/mol@LB@Unfolding Energy - mRNA 2.78278 kcal/mol@LB@Unfolding Energy - sRNA 0.386761 kcal/mol@LB@@LB@Position - mRNA 169 -- 225@LB@Position - sRNA 174 -- 208@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 202 -- 208@LB@ |
163 |
0.04467 |
0.7375 |
lmo1286 |
parE |
-16.49 |
0.051436 |
172 -- 223 |
160 -- 211 |
DNA topoisomerase IV subunit B |
|
_____________171____________________________224\n_____________|______________________________|\n5'-CUU...AAUCA______UAA__________AU_________UUUUA...UAC-3'\n______________GCUAGU___UGCUAUUCUG____AAGGUGG\n______________:|||||___|||:|||||:____|||:|||\n______________UGAUCA___ACGGUAAGAU____UUCUACC\n3'-GUU...CAGAC___________________AACC_______UAUGU...GGA-5'\n_____________|______________________________|\n_____________212____________________________159\n |
135 -- 141 |
96 -- 102 |
-24.989 kcal/mol |
7.49229 kcal/mol |
9.10061 kcal/mol |
171 224@LB@ | |@LB@5'-CUU...AAUCA UAA AU UUUUA...UAC-3'@LB@ GCUAGU UGCUAUUCUG AAGGUGG@LB@ :||||| |||:|||||: |||:|||@LB@ UGAUCA ACGGUAAGAU UUCUACC@LB@3'-GUU...CAGAC AACC UAUGU...GGA-5'@LB@ | |@LB@ 212 159@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -24.989 kcal/mol@LB@Unfolding Energy - mRNA 7.49229 kcal/mol@LB@Unfolding Energy - sRNA 9.10061 kcal/mol@LB@@LB@Position - mRNA 172 -- 223@LB@Position - sRNA 160 -- 211@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 96 -- 102@LB@ |
164 |
0.04503 |
0.7389 |
lmo2361 |
N/A |
-17.31 |
0.035661 |
175 -- 215 |
153 -- 209 |
|
|
_____________174____________216\n_____________|______________|\n5'-CCA...AGGUA_________A____GAGGA...ACC-3'\n______________AUAAUGGGA_GAGG\n______________||||:||||_||||\n______________UAUUGCCCU_CUCC\n3'-GUU...AUACG_________A____GUAUC...GGA-5'\n_____________|______________|\n_____________210____________152\n |
177 -- 183 |
201 -- 207 |
-18.1933 kcal/mol |
2.24476 kcal/mol |
3.5857 kcal/mol |
174 216@LB@ | |@LB@5'-CCA...AGGUA A GAGGA...ACC-3'@LB@ AUAAUGGGA GAGG@LB@ ||||:|||| ||||@LB@ UAUUGCCCU CUCC@LB@3'-GUU...AUACG A GUAUC...GGA-5'@LB@ | |@LB@ 210 152@LB@@LB@@LB@Energy -17.31 kcal/mol@LB@Hybridization Energy -18.1933 kcal/mol@LB@Unfolding Energy - mRNA 2.24476 kcal/mol@LB@Unfolding Energy - sRNA 3.5857 kcal/mol@LB@@LB@Position - mRNA 175 -- 215@LB@Position - sRNA 153 -- 209@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 201 -- 207@LB@ |
165 |
0.04532 |
0.7392 |
lmo2091 |
argH |
-16.36 |
0.054421 |
189 -- 262 |
141 -- 199 |
argininosuccinate lyase |
|
_____________188_________________263\n_____________|___________________|\n5'-UCA...GGUCA_______G__GAG______AAAUC...AAG-3'\n______________UGCCAUU_UA___GGAAGA\n______________|||||||_||___||||||\n______________ACGGUAA_AU___CCUUCU\n3'-GUU...GAUCA_______G__AA_______ACCUA...GGA-5'\n_____________|___________________|\n_____________200_________________140\n |
20 -- 26 |
110 -- 116 |
-20.7676 kcal/mol |
3.64063 kcal/mol |
5.20705 kcal/mol |
188 263@LB@ | |@LB@5'-UCA...GGUCA G GAG AAAUC...AAG-3'@LB@ UGCCAUU UA GGAAGA@LB@ ||||||| || ||||||@LB@ ACGGUAA AU CCUUCU@LB@3'-GUU...GAUCA G AA ACCUA...GGA-5'@LB@ | |@LB@ 200 140@LB@@LB@@LB@Energy -16.36 kcal/mol@LB@Hybridization Energy -20.7676 kcal/mol@LB@Unfolding Energy - mRNA 3.64063 kcal/mol@LB@Unfolding Energy - sRNA 5.20705 kcal/mol@LB@@LB@Position - mRNA 189 -- 262@LB@Position - sRNA 141 -- 199@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 110 -- 116@LB@ |
166 |
0.04633 |
0.7403 |
lmo1152 |
N/A |
-16.33 |
0.055198 |
97 -- 188 |
95 -- 169 |
PduB protein |
|
_____________96_______________189\n_____________|________________|\n5'-GGC...AAGUC________________AAUAA...AAG-3'\n______________AGAUGAGUGA__GCAA\n______________||||||:|||__:|||\n______________UCUACUUACU__UGUU\n3'-GUU...GUUAC__________UU____UAUUA...GGA-5'\n_____________|________________|\n_____________170______________94\n |
100 -- 106 |
160 -- 166 |
-13.7881 kcal/mol |
2.27776 kcal/mol |
0.924402 kcal/mol |
96 189@LB@ | |@LB@5'-GGC...AAGUC AAUAA...AAG-3'@LB@ AGAUGAGUGA GCAA@LB@ ||||||:||| :|||@LB@ UCUACUUACU UGUU@LB@3'-GUU...GUUAC UU UAUUA...GGA-5'@LB@ | |@LB@ 170 94@LB@@LB@@LB@Energy -16.33 kcal/mol@LB@Hybridization Energy -13.7881 kcal/mol@LB@Unfolding Energy - mRNA 2.27776 kcal/mol@LB@Unfolding Energy - sRNA 0.924402 kcal/mol@LB@@LB@Position - mRNA 97 -- 188@LB@Position - sRNA 95 -- 169@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 160 -- 166@LB@ |
167 |
0.04638 |
0.7403 |
lmo1401 |
N/A |
-16.51 |
0.050998 |
149 -- 209 |
155 -- 204 |
|
|
_____________148________210\n_____________|__________|\n5'-AUU...AACAA__________CUAUU...UCA-3'\n______________AAUGAAAAUA\n______________||||||||:|\n______________UUACUUUUGU\n3'-GUU...UCUAC__________UUAUU...GGA-5'\n_____________|__________|\n_____________205________154\n |
203 -- 209 |
155 -- 161 |
-7.61408 kcal/mol |
0.775188 kcal/mol |
0.60613 kcal/mol |
148 210@LB@ | |@LB@5'-AUU...AACAA CUAUU...UCA-3'@LB@ AAUGAAAAUA@LB@ ||||||||:|@LB@ UUACUUUUGU@LB@3'-GUU...UCUAC UUAUU...GGA-5'@LB@ | |@LB@ 205 154@LB@@LB@@LB@Energy -16.51 kcal/mol@LB@Hybridization Energy -7.61408 kcal/mol@LB@Unfolding Energy - mRNA 0.775188 kcal/mol@LB@Unfolding Energy - sRNA 0.60613 kcal/mol@LB@@LB@Position - mRNA 149 -- 209@LB@Position - sRNA 155 -- 204@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 155 -- 161@LB@ |
168 |
0.04649 |
0.7403 |
lmo1875 |
N/A |
-18.37 |
0.021889 |
174 -- 204 |
150 -- 181 |
ABC transporter ATP-binding protein |
|
_____________173_______________205\n_____________|_________________|\n5'-ACA...AACAG__A______________AUGAA...GUU-3'\n______________GA_AUGGAUGGGAAUAA\n______________||_|||:|||::||:||\n______________CU_UACUUACUUUUGUU\n3'-GUU...GGUUA__C______________UAUUA...GGA-5'\n_____________|_________________|\n_____________182_______________149\n |
193 -- 199 |
155 -- 161 |
-14.111 kcal/mol |
2.1341 kcal/mol |
0.933796 kcal/mol |
173 205@LB@ | |@LB@5'-ACA...AACAG A AUGAA...GUU-3'@LB@ GA AUGGAUGGGAAUAA@LB@ || |||:|||::||:||@LB@ CU UACUUACUUUUGUU@LB@3'-GUU...GGUUA C UAUUA...GGA-5'@LB@ | |@LB@ 182 149@LB@@LB@@LB@Energy -18.37 kcal/mol@LB@Hybridization Energy -14.111 kcal/mol@LB@Unfolding Energy - mRNA 2.1341 kcal/mol@LB@Unfolding Energy - sRNA 0.933796 kcal/mol@LB@@LB@Position - mRNA 174 -- 204@LB@Position - sRNA 150 -- 181@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 155 -- 161@LB@ |
169 |
0.04649 |
0.7403 |
lmo0268 |
N/A |
-16.22 |
0.057928 |
275 -- 284 |
195 -- 204 |
phosphoglycerate mutase |
|
_____________274________285\n_____________|__________|\n5'-ACC...AUGCA__________GAUUC...UUG-3'\n______________GGGAUGGGGC\n______________||||||:|||\n______________CCCUACUCCG\n3'-GUU...UAUUG__________UAUCU...GGA-5'\n_____________|__________|\n_____________205________194\n |
278 -- 284 |
195 -- 201 |
-19.94 kcal/mol |
1.96731 kcal/mol |
6.55531 kcal/mol |
274 285@LB@ | |@LB@5'-ACC...AUGCA GAUUC...UUG-3'@LB@ GGGAUGGGGC@LB@ ||||||:|||@LB@ CCCUACUCCG@LB@3'-GUU...UAUUG UAUCU...GGA-5'@LB@ | |@LB@ 205 194@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -19.94 kcal/mol@LB@Unfolding Energy - mRNA 1.96731 kcal/mol@LB@Unfolding Energy - sRNA 6.55531 kcal/mol@LB@@LB@Position - mRNA 275 -- 284@LB@Position - sRNA 195 -- 204@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 195 -- 201@LB@ |
170 |
0.04745 |
0.7511 |
lmo2203 |
N/A |
-15.31 |
0.085499 |
133 -- 190 |
99 -- 165 |
N-acetylmuramoyl-L-alanine amidase |
|
_____________132___________________________________191\n_____________|_____________________________________|\n5'-AUA...AGGUU_________________A________AA_________ACUAA...CAG-3'\n______________AACAGA_____GAC_AG__GCCAUUU__AUUGGGGGA\n______________||||||_____|||_||__||||||:__|||||::||\n______________UUGUCU_____CUG_UC__CGGUAAG__UAACCUUCU\n3'-GUU...CAGAU______ACAGA___A__AA_______A__________ACCUA...GGA-5'\n_____________|_____________________________________|\n_____________166___________________________________98\n |
184 -- 190 |
99 -- 105 |
-25.8209 kcal/mol |
4.57897 kcal/mol |
9.42764 kcal/mol |
132 191@LB@ | |@LB@5'-AUA...AGGUU A AA ACUAA...CAG-3'@LB@ AACAGA GAC AG GCCAUUU AUUGGGGGA@LB@ |||||| ||| || ||||||: |||||::||@LB@ UUGUCU CUG UC CGGUAAG UAACCUUCU@LB@3'-GUU...CAGAU ACAGA A AA A ACCUA...GGA-5'@LB@ | |@LB@ 166 98@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -25.8209 kcal/mol@LB@Unfolding Energy - mRNA 4.57897 kcal/mol@LB@Unfolding Energy - sRNA 9.42764 kcal/mol@LB@@LB@Position - mRNA 133 -- 190@LB@Position - sRNA 99 -- 165@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 99 -- 105@LB@ |