81 |
0.02179 |
0.6733 |
lmo0087 |
N/A |
-17.84 |
0.027970 |
185 -- 226 |
166 -- 207 |
lmo0087 |
|
_____________184____________________227\n_____________|______________________|\n5'-ACU...AUUAU___AU____G____________AACCU...AUC-3'\n______________UGA__UGGA_GAGAGCAAAUGA\n______________|||__||:|_||:|:|||||:|\n______________ACU__ACUU_CUUUUGUUUAUU\n3'-GUU...CGGUU___CU____A____________ACUAA...GGA-5'\n_____________|______________________|\n_____________208____________________165\n |
195 -- 201 |
153 -- 159 |
-17.3998 kcal/mol |
2.37482 kcal/mol |
5.01319 kcal/mol |
184 227@LB@ | |@LB@5'-ACU...AUUAU AU G AACCU...AUC-3'@LB@ UGA UGGA GAGAGCAAAUGA@LB@ ||| ||:| ||:|:|||||:|@LB@ ACU ACUU CUUUUGUUUAUU@LB@3'-GUU...CGGUU CU A ACUAA...GGA-5'@LB@ | |@LB@ 208 165@LB@@LB@@LB@Energy -17.84 kcal/mol@LB@Hybridization Energy -17.3998 kcal/mol@LB@Unfolding Energy - mRNA 2.37482 kcal/mol@LB@Unfolding Energy - sRNA 5.01319 kcal/mol@LB@@LB@Position - mRNA 185 -- 226@LB@Position - sRNA 166 -- 207@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 153 -- 159@LB@ |
82 |
0.02188 |
0.6733 |
lmo0200 |
prfA |
-17.77 |
0.028863 |
191 -- 222 |
162 -- 204 |
listeriolysin positive regulatory protein |
|
_____________190______223\n_____________|________|\n5'-UCA...AUUGG________ACAUG...AUC-3'\n______________GGGAUGAG\n______________||||||||\n______________CCCUACUC\n3'-GUU...UAUUG________CGUAU...GGA-5'\n_____________|________|\n_____________205______161\n |
192 -- 198 |
197 -- 203 |
-14.1607 kcal/mol |
1.90446 kcal/mol |
0.386531 kcal/mol |
190 223@LB@ | |@LB@5'-UCA...AUUGG ACAUG...AUC-3'@LB@ GGGAUGAG@LB@ ||||||||@LB@ CCCUACUC@LB@3'-GUU...UAUUG CGUAU...GGA-5'@LB@ | |@LB@ 205 161@LB@@LB@@LB@Energy -17.77 kcal/mol@LB@Hybridization Energy -14.1607 kcal/mol@LB@Unfolding Energy - mRNA 1.90446 kcal/mol@LB@Unfolding Energy - sRNA 0.386531 kcal/mol@LB@@LB@Position - mRNA 191 -- 222@LB@Position - sRNA 162 -- 204@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 197 -- 203@LB@ |
83 |
0.02274 |
0.6733 |
lmo1752 |
N/A |
-17.06 |
0.039898 |
184 -- 210 |
151 -- 173 |
lmo1752 |
|
_____________183___________211\n_____________|_____________|\n5'-CUA...CAAGA_____________CGAUA...CAG-3'\n______________AAUGAGGUGAAUG\n______________||||||:||||||\n______________UUACUCUACUUAC\n3'-GUU...GCCGG_____________UUUUG...GGA-5'\n_____________|_____________|\n_____________174___________150\n |
190 -- 196 |
161 -- 167 |
-16.9304 kcal/mol |
1.40294 kcal/mol |
0.838004 kcal/mol |
183 211@LB@ | |@LB@5'-CUA...CAAGA CGAUA...CAG-3'@LB@ AAUGAGGUGAAUG@LB@ ||||||:||||||@LB@ UUACUCUACUUAC@LB@3'-GUU...GCCGG UUUUG...GGA-5'@LB@ | |@LB@ 174 150@LB@@LB@@LB@Energy -17.06 kcal/mol@LB@Hybridization Energy -16.9304 kcal/mol@LB@Unfolding Energy - mRNA 1.40294 kcal/mol@LB@Unfolding Energy - sRNA 0.838004 kcal/mol@LB@@LB@Position - mRNA 184 -- 210@LB@Position - sRNA 151 -- 173@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 161 -- 167@LB@ |
84 |
0.02276 |
0.6733 |
lmo2467 |
N/A |
-18.10 |
0.024762 |
166 -- 213 |
154 -- 198 |
chitin-binding protein |
|
_____________165__________________________________________________214\n_____________|____________________________________________________|\n5'-UCA...CAAAA_____________________UGAAA__AA____CAUC______________CGAAG...AAC-3'\n______________AGGUAUA___AUGAACUAUAC_____GG__GGUG____AUGAA_GAAAAUGA\n______________|||:|||___||||||||:||_____||__::||____|||||_|||||::|\n______________UCCGUAU___UACUUGAUGUG_____CC__UUAC____UACUU_CUUUUGUU\n3'-GUU...CCUAC_______CUG__________________GG____UC_______A________UAUUA...GGA-5'\n_____________|____________________________________________________|\n_____________199__________________________________________________153\n |
206 -- 212 |
155 -- 161 |
-31.7912 kcal/mol |
6.75491 kcal/mol |
13.9801 kcal/mol |
165 214@LB@ | |@LB@5'-UCA...CAAAA UGAAA AA CAUC CGAAG...AAC-3'@LB@ AGGUAUA AUGAACUAUAC GG GGUG AUGAA GAAAAUGA@LB@ |||:||| ||||||||:|| || ::|| ||||| |||||::|@LB@ UCCGUAU UACUUGAUGUG CC UUAC UACUU CUUUUGUU@LB@3'-GUU...CCUAC CUG GG UC A UAUUA...GGA-5'@LB@ | |@LB@ 199 153@LB@@LB@@LB@Energy -18.10 kcal/mol@LB@Hybridization Energy -31.7912 kcal/mol@LB@Unfolding Energy - mRNA 6.75491 kcal/mol@LB@Unfolding Energy - sRNA 13.9801 kcal/mol@LB@@LB@Position - mRNA 166 -- 213@LB@Position - sRNA 154 -- 198@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 155 -- 161@LB@ |
85 |
0.0229 |
0.6733 |
lmo1788 |
N/A |
-18.82 |
0.017630 |
177 -- 227 |
165 -- 211 |
transcriptional regulator |
|
_____________176______________________________________________________228\n_____________|________________________________________________________|\n5'-UCU...AAAUG_______C______G____AA__G_____AAAA__A____CUGCUUAU________UUCAG...GGC-3'\n______________GAGGUGU_AGAUAU_GAAC__UG_ACGGU____GA_AUGG________GUGGGGAU\n______________||||::|_|||:||_||||__|:_||||:____||_|||:________:||:::|:\n______________CUCCGUA_UCUGUA_CUUG__AU_UGCCG____CU_UACU________UACUUUUG\n3'-GUU...CCCUA_______________________G_____GUUA__C____________________UUUAU...GGA-5'\n_____________|________________________________________________________|\n_____________212______________________________________________________164\n |
238 -- 244 |
156 -- 162 |
-32.2408 kcal/mol |
14.3369 kcal/mol |
13.9689 kcal/mol |
176 228@LB@ | |@LB@5'-UCU...AAAUG C G AA G AAAA A CUGCUUAU UUCAG...GGC-3'@LB@ GAGGUGU AGAUAU GAAC UG ACGGU GA AUGG GUGGGGAU@LB@ ||||::| |||:|| |||| |: ||||: || |||: :||:::|:@LB@ CUCCGUA UCUGUA CUUG AU UGCCG CU UACU UACUUUUG@LB@3'-GUU...CCCUA G GUUA C UUUAU...GGA-5'@LB@ | |@LB@ 212 164@LB@@LB@@LB@Energy -18.82 kcal/mol@LB@Hybridization Energy -32.2408 kcal/mol@LB@Unfolding Energy - mRNA 14.3369 kcal/mol@LB@Unfolding Energy - sRNA 13.9689 kcal/mol@LB@@LB@Position - mRNA 177 -- 227@LB@Position - sRNA 165 -- 211@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 156 -- 162@LB@ |
86 |
0.02293 |
0.6733 |
lmo0853 |
N/A |
-17.72 |
0.029549 |
77 -- 124 |
163 -- 214 |
SugE protein |
|
_____________76__________________________________________________________125\n_____________|___________________________________________________________|\n5'-GAC...CGUUU________CUUCU______AC__________________________AUUUAU______ACGGA...UUU-3'\n______________UUUAUGCA_____UGAUGG__UGA_GUGUGGA________ACACGGC______GAUGAA\n______________::||||||_____|:|:||__|||_|::|:||________|||||||______||||||\n______________GGAUACGU_____AUUGCC__ACU_CGUAUCU________UGUGCCG______CUACUU\n3'-GUU...CCCGC___________________CU___C_______GUACUUGA_______GUUACU______ACUUU...GGA-5'\n_____________|___________________________________________________________|\n_____________215_________________________________________________________162\n |
106 -- 112 |
175 -- 181 |
-38.3816 kcal/mol |
10.3843 kcal/mol |
19.6349 kcal/mol |
76 125@LB@ | |@LB@5'-GAC...CGUUU CUUCU AC AUUUAU ACGGA...UUU-3'@LB@ UUUAUGCA UGAUGG UGA GUGUGGA ACACGGC GAUGAA@LB@ ::|||||| |:|:|| ||| |::|:|| ||||||| ||||||@LB@ GGAUACGU AUUGCC ACU CGUAUCU UGUGCCG CUACUU@LB@3'-GUU...CCCGC CU C GUACUUGA GUUACU ACUUU...GGA-5'@LB@ | |@LB@ 215 162@LB@@LB@@LB@Energy -17.72 kcal/mol@LB@Hybridization Energy -38.3816 kcal/mol@LB@Unfolding Energy - mRNA 10.3843 kcal/mol@LB@Unfolding Energy - sRNA 19.6349 kcal/mol@LB@@LB@Position - mRNA 77 -- 124@LB@Position - sRNA 163 -- 214@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 175 -- 181@LB@ |
87 |
0.02294 |
0.6733 |
lmo2765 |
N/A |
-17.07 |
0.039744 |
188 -- 213 |
176 -- 199 |
PTS cellbiose transporter subunit IIA |
|
_____________187_________________214\n_____________|___________________|\n5'-UUA...UAGAC________A__________GUUAU...AUU-3'\n______________AUGA_AUG_AAUGGAAACA\n______________||||_|||_||||:|||||\n______________UACU_UAC_UUACUUUUGU\n3'-GUU...CCGGU____C______________UUAUU...GGA-5'\n_____________|___________________|\n_____________200_________________175\n |
212 -- 218 |
155 -- 161 |
-13.3886 kcal/mol |
2.47541 kcal/mol |
0.935542 kcal/mol |
187 214@LB@ | |@LB@5'-UUA...UAGAC A GUUAU...AUU-3'@LB@ AUGA AUG AAUGGAAACA@LB@ |||| ||| ||||:|||||@LB@ UACU UAC UUACUUUUGU@LB@3'-GUU...CCGGU C UUAUU...GGA-5'@LB@ | |@LB@ 200 175@LB@@LB@@LB@Energy -17.07 kcal/mol@LB@Hybridization Energy -13.3886 kcal/mol@LB@Unfolding Energy - mRNA 2.47541 kcal/mol@LB@Unfolding Energy - sRNA 0.935542 kcal/mol@LB@@LB@Position - mRNA 188 -- 213@LB@Position - sRNA 176 -- 199@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 155 -- 161@LB@ |
88 |
0.02298 |
0.6733 |
lmo0666 |
N/A |
-13.39 |
0.184164 |
127 -- 173 |
156 -- 211 |
|
|
_____________126__________________________________________________________________________________174\n_____________|____________________________________________________________________________________|\n5'-AAG...AUUCA____A__GAACC______AA__C___AGU____AC___A__AAA_____GUUA______G_____GC_________________UCGUU...AUG-3'\n______________GCCA_CA______GGCGC__AU_GCA___AUGG__GGU_AG___AUAGA____GA___A_ACGGC_________GAAUGGAGAC\n______________||||_||______|||||__||_|||___|:||__|:|_||___|||||____||___|_|||||_________|||||:|:||\n______________CGGU_GU______CCGCG__UA_CGU___UGCC__CUA_UC___UAUCU____CU___U_UGCCG_________CUUACUUUUG\n3'-GUU...CGCAA____A__ACAAGC_____GA______AU__________C__CG______GUA___UGA_G_____GUUACUCUA__________UUUAU...GGA-5'\n_____________|____________________________________________________________________________________|\n_____________212__________________________________________________________________________________155\n |
167 -- 173 |
156 -- 162 |
-45.3275 kcal/mol |
14.8697 kcal/mol |
22.6898 kcal/mol |
126 174@LB@ | |@LB@5'-AAG...AUUCA A GAACC AA C AGU AC A AAA GUUA G GC UCGUU...AUG-3'@LB@ GCCA CA GGCGC AU GCA AUGG GGU AG AUAGA GA A ACGGC GAAUGGAGAC@LB@ |||| || ||||| || ||| |:|| |:| || ||||| || | ||||| |||||:|:||@LB@ CGGU GU CCGCG UA CGU UGCC CUA UC UAUCU CU U UGCCG CUUACUUUUG@LB@3'-GUU...CGCAA A ACAAGC GA AU C CG GUA UGA G GUUACUCUA UUUAU...GGA-5'@LB@ | |@LB@ 212 155@LB@@LB@@LB@Energy -13.39 kcal/mol@LB@Hybridization Energy -45.3275 kcal/mol@LB@Unfolding Energy - mRNA 14.8697 kcal/mol@LB@Unfolding Energy - sRNA 22.6898 kcal/mol@LB@@LB@Position - mRNA 127 -- 173@LB@Position - sRNA 156 -- 211@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 156 -- 162@LB@ |
89 |
0.02343 |
0.6733 |
lmo1651 |
N/A |
-15.38 |
0.082912 |
189 -- 217 |
147 -- 170 |
ABC transporter ATP-binding protein |
|
_____________188___________________________218\n_____________|_____________________________|\n5'-GAA...AGAAG______UAGCA___________UG_____ACAAG...UUC-3'\n______________GGGGUG_____GAUGGAAGCGA__AAUGA\n______________|:|:||_____:|||:||:|:|__|||||\n______________CUCUAC_____UUACUUUUGUU__UUACU\n3'-GUU...GGUUA______________________UA_____AAAAC...GGA-5'\n_____________|_____________________________|\n_____________171___________________________146\n |
204 -- 210 |
154 -- 160 |
-21.1438 kcal/mol |
4.28476 kcal/mol |
5.93585 kcal/mol |
188 218@LB@ | |@LB@5'-GAA...AGAAG UAGCA UG ACAAG...UUC-3'@LB@ GGGGUG GAUGGAAGCGA AAUGA@LB@ |:|:|| :|||:||:|:| |||||@LB@ CUCUAC UUACUUUUGUU UUACU@LB@3'-GUU...GGUUA UA AAAAC...GGA-5'@LB@ | |@LB@ 171 146@LB@@LB@@LB@Energy -15.38 kcal/mol@LB@Hybridization Energy -21.1438 kcal/mol@LB@Unfolding Energy - mRNA 4.28476 kcal/mol@LB@Unfolding Energy - sRNA 5.93585 kcal/mol@LB@@LB@Position - mRNA 189 -- 217@LB@Position - sRNA 147 -- 170@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 154 -- 160@LB@ |
90 |
0.02372 |
0.6733 |
lmo2712 |
N/A |
-17.76 |
0.029098 |
218 -- 285 |
160 -- 210 |
gluconate kinase |
|
_____________217________286\n_____________|__________|\n5'-AGA...AAAAU__________CUGUU...CGA-3'\n______________GCGGGGUGAG\n______________:||||:||||\n______________UGCCCUACUC\n3'-GUU...CGUAU__________CGUAU...GGA-5'\n_____________|__________|\n_____________211________159\n |
190 -- 196 |
197 -- 203 |
-16.6296 kcal/mol |
4.31289 kcal/mol |
0.38676 kcal/mol |
217 286@LB@ | |@LB@5'-AGA...AAAAU CUGUU...CGA-3'@LB@ GCGGGGUGAG@LB@ :||||:||||@LB@ UGCCCUACUC@LB@3'-GUU...CGUAU CGUAU...GGA-5'@LB@ | |@LB@ 211 159@LB@@LB@@LB@Energy -17.76 kcal/mol@LB@Hybridization Energy -16.6296 kcal/mol@LB@Unfolding Energy - mRNA 4.31289 kcal/mol@LB@Unfolding Energy - sRNA 0.38676 kcal/mol@LB@@LB@Position - mRNA 218 -- 285@LB@Position - sRNA 160 -- 210@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 197 -- 203@LB@ |