91 |
0.02389 |
0.6733 |
lmo2425 |
N/A |
-16.15 |
0.059838 |
240 -- 263 |
146 -- 170 |
glycine cleavage system protein H |
|
_____________239______________264\n_____________|________________|\n5'-CGA...AACAC________________GACGA...AUC-3'\n______________GA_AUGGGUGAAAGCA\n______________||_|||::|||||:||\n______________CU_UACUUACUUUUGU\n3'-GUU...GGUUA__C_____________UUAUU...GGA-5'\n_____________|________________|\n_____________171______________145\n |
248 -- 254 |
155 -- 161 |
-15.1065 kcal/mol |
3.08859 kcal/mol |
0.929544 kcal/mol |
239 264@LB@ | |@LB@5'-CGA...AACAC GACGA...AUC-3'@LB@ GA AUGGGUGAAAGCA@LB@ || |||::|||||:||@LB@ CU UACUUACUUUUGU@LB@3'-GUU...GGUUA C UUAUU...GGA-5'@LB@ | |@LB@ 171 145@LB@@LB@@LB@Energy -16.15 kcal/mol@LB@Hybridization Energy -15.1065 kcal/mol@LB@Unfolding Energy - mRNA 3.08859 kcal/mol@LB@Unfolding Energy - sRNA 0.929544 kcal/mol@LB@@LB@Position - mRNA 240 -- 263@LB@Position - sRNA 146 -- 170@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 155 -- 161@LB@ |
92 |
0.02404 |
0.6733 |
lmo1947 |
resE |
-16.63 |
0.048416 |
181 -- 212 |
141 -- 170 |
two-component sensor histidine kinas |
|
_____________180_________________213\n_____________|___________________|\n5'-AAG...ACCGA_______AUA_________UUGGA...UUU-3'\n______________GGUGAGA___GAUGAAGAU\n______________::|||||___:|||||:|:\n______________UUACUCU___UUACUUUUG\n3'-GUU...GCCGG_______AC__________UUUAU...GGA-5'\n_____________|___________________|\n_____________171_________________140\n |
202 -- 208 |
156 -- 162 |
-13.4823 kcal/mol |
2.25638 kcal/mol |
0.941471 kcal/mol |
180 213@LB@ | |@LB@5'-AAG...ACCGA AUA UUGGA...UUU-3'@LB@ GGUGAGA GAUGAAGAU@LB@ ::||||| :|||||:|:@LB@ UUACUCU UUACUUUUG@LB@3'-GUU...GCCGG AC UUUAU...GGA-5'@LB@ | |@LB@ 171 140@LB@@LB@@LB@Energy -16.63 kcal/mol@LB@Hybridization Energy -13.4823 kcal/mol@LB@Unfolding Energy - mRNA 2.25638 kcal/mol@LB@Unfolding Energy - sRNA 0.941471 kcal/mol@LB@@LB@Position - mRNA 181 -- 212@LB@Position - sRNA 141 -- 170@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 156 -- 162@LB@ |
93 |
0.02416 |
0.6733 |
lmo2042 |
N/A |
-17.13 |
0.038629 |
149 -- 196 |
158 -- 206 |
cell division protein MraZ |
|
_____________148_____________________________________________197\n_____________|_______________________________________________|\n5'-UUU...GCGAA_________________UAAAG_____AUGU____AA__________UCUAA...CCC-3'\n______________GUGGGG___AGAUGUGG______UGGU____AUGA__GUGGGUGAAG\n______________:||:||___|||::||:______:||:____||||__:||::||||:\n______________UACUCC___UCUGUACU______GCCG____UACU__UACUUACUUU\n3'-GUU...UGCCC______GUA________UGAUGU____GU______C___________UGUUU...GGA-5'\n_____________|_______________________________________________|\n_____________207_____________________________________________157\n |
190 -- 196 |
158 -- 164 |
-27.738 kcal/mol |
5.20754 kcal/mol |
13.9391 kcal/mol |
148 197@LB@ | |@LB@5'-UUU...GCGAA UAAAG AUGU AA UCUAA...CCC-3'@LB@ GUGGGG AGAUGUGG UGGU AUGA GUGGGUGAAG@LB@ :||:|| |||::||: :||: |||| :||::||||:@LB@ UACUCC UCUGUACU GCCG UACU UACUUACUUU@LB@3'-GUU...UGCCC GUA UGAUGU GU C UGUUU...GGA-5'@LB@ | |@LB@ 207 157@LB@@LB@@LB@Energy -17.13 kcal/mol@LB@Hybridization Energy -27.738 kcal/mol@LB@Unfolding Energy - mRNA 5.20754 kcal/mol@LB@Unfolding Energy - sRNA 13.9391 kcal/mol@LB@@LB@Position - mRNA 149 -- 196@LB@Position - sRNA 158 -- 206@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 158 -- 164@LB@ |
94 |
0.02439 |
0.6733 |
lmo0952 |
N/A |
-17.21 |
0.037353 |
188 -- 223 |
166 -- 199 |
lmo0952 |
|
_____________187__________________________________224\n_____________|____________________________________|\n5'-AAC...AAACG________UU__GAU_____A___AA__________AGUAC...UAA-3'\n______________GAGGCAUA__CA___GAUUA_ACG__CUGGUGAGAU\n______________||||||||__||___:|:||_|||__|:::||||||\n______________CUCCGUAU__GU___UUGAU_UGC__GGUUACUCUA\n3'-GUU...CCCUA________CU__AC______G___C___________CUUAC...GGA-5'\n_____________|____________________________________|\n_____________200__________________________________165\n |
217 -- 223 |
166 -- 172 |
-30.0979 kcal/mol |
6.14462 kcal/mol |
13.4403 kcal/mol |
187 224@LB@ | |@LB@5'-AAC...AAACG UU GAU A AA AGUAC...UAA-3'@LB@ GAGGCAUA CA GAUUA ACG CUGGUGAGAU@LB@ |||||||| || :|:|| ||| |:::||||||@LB@ CUCCGUAU GU UUGAU UGC GGUUACUCUA@LB@3'-GUU...CCCUA CU AC G C CUUAC...GGA-5'@LB@ | |@LB@ 200 165@LB@@LB@@LB@Energy -17.21 kcal/mol@LB@Hybridization Energy -30.0979 kcal/mol@LB@Unfolding Energy - mRNA 6.14462 kcal/mol@LB@Unfolding Energy - sRNA 13.4403 kcal/mol@LB@@LB@Position - mRNA 188 -- 223@LB@Position - sRNA 166 -- 199@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 166 -- 172@LB@ |
95 |
0.02474 |
0.6733 |
lmo2446 |
N/A |
-18.44 |
0.021161 |
178 -- 278 |
95 -- 188 |
glycosidase |
|
_____________177____________________279\n_____________|______________________|\n5'-UGA...AGGAA___________GC_A_______GAAAA...ACG-3'\n______________AGUGAGAUGAA__G_AGAACGA\n______________|:|||||||||__|_|:|||:|\n______________UUACUCUACUU__C_UUUUGUU\n3'-GUU...GCCGG___________A__________UAUUA...GGA-5'\n_____________|______________________|\n_____________189____________________94\n |
210 -- 216 |
154 -- 160 |
-17.9823 kcal/mol |
4.45349 kcal/mol |
0.959215 kcal/mol |
177 279@LB@ | |@LB@5'-UGA...AGGAA GC A GAAAA...ACG-3'@LB@ AGUGAGAUGAA G AGAACGA@LB@ |:||||||||| | |:|||:|@LB@ UUACUCUACUU C UUUUGUU@LB@3'-GUU...GCCGG A UAUUA...GGA-5'@LB@ | |@LB@ 189 94@LB@@LB@@LB@Energy -18.44 kcal/mol@LB@Hybridization Energy -17.9823 kcal/mol@LB@Unfolding Energy - mRNA 4.45349 kcal/mol@LB@Unfolding Energy - sRNA 0.959215 kcal/mol@LB@@LB@Position - mRNA 178 -- 278@LB@Position - sRNA 95 -- 188@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 154 -- 160@LB@ |
96 |
0.02498 |
0.6733 |
lmo1278 |
clpQ |
-17.33 |
0.035430 |
185 -- 216 |
173 -- 203 |
ATP-dependent protease peptidase subunit |
|
_____________184_____217\n_____________|_______|\n5'-AAA...UCAAC_______AAAAG...UGA-3'\n______________AUGACGG\n______________||:||||\n______________UAUUGCC\n3'-GUU...AUACG_______CUACU...GGA-5'\n_____________|_______|\n_____________204_____172\n |
238 -- 244 |
203 -- 209 |
-8.20287 kcal/mol |
1.40847 kcal/mol |
0.374301 kcal/mol |
184 217@LB@ | |@LB@5'-AAA...UCAAC AAAAG...UGA-3'@LB@ AUGACGG@LB@ ||:||||@LB@ UAUUGCC@LB@3'-GUU...AUACG CUACU...GGA-5'@LB@ | |@LB@ 204 172@LB@@LB@@LB@Energy -17.33 kcal/mol@LB@Hybridization Energy -8.20287 kcal/mol@LB@Unfolding Energy - mRNA 1.40847 kcal/mol@LB@Unfolding Energy - sRNA 0.374301 kcal/mol@LB@@LB@Position - mRNA 185 -- 216@LB@Position - sRNA 173 -- 203@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 203 -- 209@LB@ |
97 |
0.02539 |
0.6733 |
lmo2585 |
N/A |
-13.14 |
0.201793 |
84 -- 125 |
164 -- 211 |
|
|
_____________83______126\n_____________|_______|\n5'-ACA...GAUGC_______AAGGG...AAG-3'\n______________GGCGGGA\n______________::|||||\n______________UUGCCCU\n3'-GUU...ACGUA_______ACUCC...GGA-5'\n_____________|_______|\n_____________212_____163\n |
178 -- 184 |
201 -- 207 |
-10.7547 kcal/mol |
3.27081 kcal/mol |
0.326294 kcal/mol |
83 126@LB@ | |@LB@5'-ACA...GAUGC AAGGG...AAG-3'@LB@ GGCGGGA@LB@ ::|||||@LB@ UUGCCCU@LB@3'-GUU...ACGUA ACUCC...GGA-5'@LB@ | |@LB@ 212 163@LB@@LB@@LB@Energy -13.14 kcal/mol@LB@Hybridization Energy -10.7547 kcal/mol@LB@Unfolding Energy - mRNA 3.27081 kcal/mol@LB@Unfolding Energy - sRNA 0.326294 kcal/mol@LB@@LB@Position - mRNA 84 -- 125@LB@Position - sRNA 164 -- 211@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 201 -- 207@LB@ |
98 |
0.02549 |
0.6733 |
lmo2155 |
N/A |
-16.07 |
0.061955 |
240 -- 298 |
157 -- 207 |
ribonucleotide-diphosphate reductase subunit alpha |
|
_____________239________299\n_____________|__________|\n5'-UAU...UAAAA__________AACAG...AAA-3'\n______________GACGGGG_GA\n______________:|||||:_||\n______________UUGCCCU_CU\n3'-GUU...ACGUA_______A__CCGUA...GGA-5'\n_____________|__________|\n_____________208________156\n |
240 -- 246 |
201 -- 207 |
-11.5149 kcal/mol |
1.00175 kcal/mol |
0.374399 kcal/mol |
239 299@LB@ | |@LB@5'-UAU...UAAAA AACAG...AAA-3'@LB@ GACGGGG GA@LB@ :|||||: ||@LB@ UUGCCCU CU@LB@3'-GUU...ACGUA A CCGUA...GGA-5'@LB@ | |@LB@ 208 156@LB@@LB@@LB@Energy -16.07 kcal/mol@LB@Hybridization Energy -11.5149 kcal/mol@LB@Unfolding Energy - mRNA 1.00175 kcal/mol@LB@Unfolding Energy - sRNA 0.374399 kcal/mol@LB@@LB@Position - mRNA 240 -- 298@LB@Position - sRNA 157 -- 207@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 201 -- 207@LB@ |
99 |
0.02562 |
0.6733 |
lmo2201 |
N/A |
-18.35 |
0.022079 |
190 -- 255 |
101 -- 170 |
3-oxoacyl-ACP synthase |
|
_____________189_____________________________________________________________________256\n_____________|_______________________________________________________________________|\n5'-AAC...AUAAG________________________GAAGA__A___GUU__U______G__GCU___A___C__________ACGAU...AUG-3'\n______________GAGAUGAGU__AAAUGGAUAA_GA_____GU_GUU___AC_GGUGUU_GA___GUU__CA__CUAUUGGAA\n______________|||||||:|__|||:::||||_||_____||_||:___||_|:|||:_||___|||__||__|||||||||\n______________CUCUACUUA__UUUGUUUAUU_CU_____CA_CAG___UG_CUACAG_CU___CAA__GU__GAUAACCUU\n3'-GUU...GGUUA_________CU__________A__AAAAC______AUU__U______A__GAU___CG__AA_________CUACC...GGA-5'\n_____________|_______________________________________________________________________|\n_____________171_____________________________________________________________________100\n |
249 -- 255 |
101 -- 107 |
-41.8612 kcal/mol |
11.5076 kcal/mol |
19.339 kcal/mol |
189 256@LB@ | |@LB@5'-AAC...AUAAG GAAGA A GUU U G GCU A C ACGAU...AUG-3'@LB@ GAGAUGAGU AAAUGGAUAA GA GU GUU AC GGUGUU GA GUU CA CUAUUGGAA@LB@ |||||||:| |||:::|||| || || ||: || |:|||: || ||| || |||||||||@LB@ CUCUACUUA UUUGUUUAUU CU CA CAG UG CUACAG CU CAA GU GAUAACCUU@LB@3'-GUU...GGUUA CU A AAAAC AUU U A GAU CG AA CUACC...GGA-5'@LB@ | |@LB@ 171 100@LB@@LB@@LB@Energy -18.35 kcal/mol@LB@Hybridization Energy -41.8612 kcal/mol@LB@Unfolding Energy - mRNA 11.5076 kcal/mol@LB@Unfolding Energy - sRNA 19.339 kcal/mol@LB@@LB@Position - mRNA 190 -- 255@LB@Position - sRNA 101 -- 170@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 101 -- 107@LB@ |
100 |
0.02596 |
0.6733 |
lmo2805 |
N/A |
-13.33 |
0.188364 |
273 -- 298 |
147 -- 172 |
hypothetical secreted protein |
|
_____________272_______________________________________299\n_____________|_________________________________________|\n5'-GAA...CAUAC______GG_____AG_____AAAAA________________AAUAG...AAA-3'\n______________AACAGA____UGA__AGUUG____________GAGAUGGAU\n______________||||||____|||__|||||____________:||||||||\n______________UUGUCU____ACU__UCAAC____________UUCUACCUA\n3'-GUU...CAGAU______ACAG___GA_____GGUAAGAUAACC_________UGUGG...GGA-5'\n_____________|_________________________________________|\n_____________173_______________________________________146\n |
211 -- 217 |
94 -- 100 |
-22.9496 kcal/mol |
2.56346 kcal/mol |
9.49359 kcal/mol |
272 299@LB@ | |@LB@5'-GAA...CAUAC GG AG AAAAA AAUAG...AAA-3'@LB@ AACAGA UGA AGUUG GAGAUGGAU@LB@ |||||| ||| ||||| :||||||||@LB@ UUGUCU ACU UCAAC UUCUACCUA@LB@3'-GUU...CAGAU ACAG GA GGUAAGAUAACC UGUGG...GGA-5'@LB@ | |@LB@ 173 146@LB@@LB@@LB@Energy -13.33 kcal/mol@LB@Hybridization Energy -22.9496 kcal/mol@LB@Unfolding Energy - mRNA 2.56346 kcal/mol@LB@Unfolding Energy - sRNA 9.49359 kcal/mol@LB@@LB@Position - mRNA 273 -- 298@LB@Position - sRNA 147 -- 172@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 94 -- 100@LB@ |