| 64 |
0.008913 |
0.4523 |
b4231 |
yjfF |
-11.33 |
0.051476 |
106 -- 140 |
1 -- 41 |
putative sugar ABC transporter permease |
|
_____________105_______________________________________141\n_____________|_________________________________________|\n5'-CGG...CCGCC_________CCA_______________C_____________UUUGC...GAG-3'\n______________AGAGAUGAA____GGUGGUGA___AAG__GGUGGUGGU_GC\n______________|||:|||||____|||::|:|___|||__::||:||:|_||\n______________UCUUUACUU____CCAUUAUU___UUC__UUACUACUA_CG\n3'-UUU...GUAAG_________ACUG________UAU___AA_________U__-5'\n_____________|________________________________________|\n_____________42_______________________________________1\n |
132 -- 138 |
4 -- 10 |
-27.205 kcal/mol |
9.83395 kcal/mol |
6.043 kcal/mol |
105 141@LB@ | |@LB@5'-CGG...CCGCC CCA C UUUGC...GAG-3'@LB@ AGAGAUGAA GGUGGUGA AAG GGUGGUGGU GC@LB@ |||:||||| |||::|:| ||| ::||:||:| ||@LB@ UCUUUACUU CCAUUAUU UUC UUACUACUA CG@LB@3'-UUU...GUAAG ACUG UAU AA U -5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -27.205 kcal/mol@LB@Unfolding Energy - mRNA 9.83395 kcal/mol@LB@Unfolding Energy - sRNA 6.043 kcal/mol@LB@@LB@Position - mRNA 106 -- 140@LB@Position - sRNA 1 -- 41@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 73 |
0.01069 |
0.4523 |
b1949 |
fliQ |
-11.32 |
0.051762 |
219 -- 228 |
2 -- 11 |
flagellar biosynthesis protein |
|
_____________218________229\n_____________|__________|\n5'-UUC...CGGUC__________GGACU...UUA-3'\n______________AUGAUGAUGG\n______________||||||||:|\n______________UACUACUAUC\n3'-UUU...UCAAU__________G-5'\n_____________|__________|\n_____________12_________1\n |
222 -- 228 |
2 -- 8 |
-12.2017 kcal/mol |
0.859554 kcal/mol |
0.0252227 kcal/mol |
218 229@LB@ | |@LB@5'-UUC...CGGUC GGACU...UUA-3'@LB@ AUGAUGAUGG@LB@ ||||||||:|@LB@ UACUACUAUC@LB@3'-UUU...UCAAU G-5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -11.32 kcal/mol@LB@Hybridization Energy -12.2017 kcal/mol@LB@Unfolding Energy - mRNA 0.859554 kcal/mol@LB@Unfolding Energy - sRNA 0.0252227 kcal/mol@LB@@LB@Position - mRNA 219 -- 228@LB@Position - sRNA 2 -- 11@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 110 |
0.01732 |
0.5155 |
b1800 |
dmlA |
-11.31 |
0.051964 |
127 -- 183 |
1 -- 58 |
D-malate oxidase NAD-dependent; putative tartrate dehydrogenase |
|
_____________126___________________________________________________________184\n_____________|_____________________________________________________________|\n5'-GGU...GUUAC____AUU___UCCUU_____UCAAUUAUAG__________UU______C___UU_______CAGGA...GCU-3'\n______________GGGG___AAU_____UUCAG__________GAUGGUGAUG______GU_AAU__UGAUGGU\n______________||||___||:_____|||||__________||:|||:||:______||_|||__||||:|:\n______________CCCC___UUG_____AAGUC__________CUGCCAUUAU______CA_UUA__ACUAUCG\n3'-UUU...UUUAU____AU____UCUGU_____UUUACUUA____________UUAUUU__A___CU_______-5'\n_____________|____________________________________________________________|\n_____________59___________________________________________________________1\n |
177 -- 183 |
1 -- 7 |
-30.6237 kcal/mol |
12.9772 kcal/mol |
6.33758 kcal/mol |
126 184@LB@ | |@LB@5'-GGU...GUUAC AUU UCCUU UCAAUUAUAG UU C UU CAGGA...GCU-3'@LB@ GGGG AAU UUCAG GAUGGUGAUG GU AAU UGAUGGU@LB@ |||| ||: ||||| ||:|||:||: || ||| ||||:|:@LB@ CCCC UUG AAGUC CUGCCAUUAU CA UUA ACUAUCG@LB@3'-UUU...UUUAU AU UCUGU UUUACUUA UUAUUU A CU -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -30.6237 kcal/mol@LB@Unfolding Energy - mRNA 12.9772 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 127 -- 183@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 186 |
0.03152 |
0.5492 |
b0922 |
mukF |
-11.29 |
0.052395 |
27 -- 43 |
42 -- 57 |
chromosome condensin MukBEF kleisin-like subunit binds calcium |
|
_____________26________________44\n_____________|_________________|\n5'-CUG...AUUAU____A____________GCGUG...UGG-3'\n______________GGGU_AGACAGGCGUUC\n______________||||_|:||||:|:|||\n______________CCCA_UUUGUCUGUAAG\n3'-UUU...UUAUC_________________UCUUU...UCG-5'\n_____________|_________________|\n_____________58________________41\n |
33 -- 39 |
46 -- 52 |
-21.5353 kcal/mol |
3.99758 kcal/mol |
6.24533 kcal/mol |
26 44@LB@ | |@LB@5'-CUG...AUUAU A GCGUG...UGG-3'@LB@ GGGU AGACAGGCGUUC@LB@ |||| |:||||:|:|||@LB@ CCCA UUUGUCUGUAAG@LB@3'-UUU...UUAUC UCUUU...UCG-5'@LB@ | |@LB@ 58 41@LB@@LB@@LB@Energy -11.29 kcal/mol@LB@Hybridization Energy -21.5353 kcal/mol@LB@Unfolding Energy - mRNA 3.99758 kcal/mol@LB@Unfolding Energy - sRNA 6.24533 kcal/mol@LB@@LB@Position - mRNA 27 -- 43@LB@Position - sRNA 42 -- 57@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 178 |
0.02931 |
0.5406 |
b3858 |
yihD |
-11.25 |
0.053413 |
186 -- 232 |
8 -- 55 |
DUF1040 protein YihD |
|
_____________185__________________________________________________233\n_____________|____________________________________________________|\n5'-AUA...CAAGA_____G_________CUAU______UAA____UC______________U___ACUCC...CGA-3'\n______________GUAAG_AG_CA_UCA____GAAAUG____ACG____UGAAUGAAGUUA_UGA\n______________||||:_||_||_|||____||||||____|||____|:|||:||||||_|||\n______________CAUUU_UC_GU_AGU____CUUUAC____UGC____AUUUAUUUCAAU_ACU\n3'-UUU...AUCCC_____G__U__A_____________UUAC___CAUU____________U___ACUAUCG-5'\n_____________|____________________________________________________|\n_____________56___________________________________________________7\n |
222 -- 228 |
12 -- 18 |
-26.8405 kcal/mol |
9.25239 kcal/mol |
6.33488 kcal/mol |
185 233@LB@ | |@LB@5'-AUA...CAAGA G CUAU UAA UC U ACUCC...CGA-3'@LB@ GUAAG AG CA UCA GAAAUG ACG UGAAUGAAGUUA UGA@LB@ ||||: || || ||| |||||| ||| |:|||:|||||| |||@LB@ CAUUU UC GU AGU CUUUAC UGC AUUUAUUUCAAU ACU@LB@3'-UUU...AUCCC G U A UUAC CAUU U ACUAUCG-5'@LB@ | |@LB@ 56 7@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -26.8405 kcal/mol@LB@Unfolding Energy - mRNA 9.25239 kcal/mol@LB@Unfolding Energy - sRNA 6.33488 kcal/mol@LB@@LB@Position - mRNA 186 -- 232@LB@Position - sRNA 8 -- 55@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 63 |
0.008816 |
0.4523 |
b3600 |
mtlD |
-11.23 |
0.053963 |
184 -- 208 |
1 -- 23 |
mannitol-1-phosphate dehydrogenase NAD-dependent |
|
_____________183_______________________209\n_____________|_________________________|\n5'-GUG...AACAU___UG_________ACU____A___AUUAC...AUC-3'\n______________UGA__AAGGUUAAU___AUGA_AGC\n______________|:|__||:||||||___||||_|||\n______________AUU__UUUCAAUUA___UACU_UCG\n3'-UUU...CCAUU___UA_________C______A___-5'\n_____________|________________________|\n_____________24_______________________1\n |
191 -- 197 |
10 -- 16 |
-14.8386 kcal/mol |
3.50103 kcal/mol |
0.105066 kcal/mol |
183 209@LB@ | |@LB@5'-GUG...AACAU UG ACU A AUUAC...AUC-3'@LB@ UGA AAGGUUAAU AUGA AGC@LB@ |:| ||:|||||| |||| |||@LB@ AUU UUUCAAUUA UACU UCG@LB@3'-UUU...CCAUU UA C A -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -14.8386 kcal/mol@LB@Unfolding Energy - mRNA 3.50103 kcal/mol@LB@Unfolding Energy - sRNA 0.105066 kcal/mol@LB@@LB@Position - mRNA 184 -- 208@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 80 |
0.01119 |
0.4523 |
b0241 |
phoE |
-11.22 |
0.054424 |
189 -- 234 |
2 -- 43 |
outer membrane phosphoporin protein E |
|
_____________188____________________________________________235\n_____________|______________________________________________|\n5'-AGC...UAAAA__________AA____AAAAGAGCACUCU__CA_____________GCAUU...AUG-3'\n______________UCAGGAAUGA__AUGA_____________GG__UUAGUGGUGAUGG\n______________||||:|||||__||||_____________:|__|||:||:||||:|\n______________AGUCUUUACU__UACU_____________UC__AAUUACUACUAUC\n3'-UUU...CUGUA________________GCCAUUAUUUAUU_________________G-5'\n_____________|______________________________________________|\n_____________44_____________________________________________1\n |
228 -- 234 |
2 -- 8 |
-27.55 kcal/mol |
10.0434 kcal/mol |
6.29139 kcal/mol |
188 235@LB@ | |@LB@5'-AGC...UAAAA AA AAAAGAGCACUCU CA GCAUU...AUG-3'@LB@ UCAGGAAUGA AUGA GG UUAGUGGUGAUGG@LB@ ||||:||||| |||| :| |||:||:||||:|@LB@ AGUCUUUACU UACU UC AAUUACUACUAUC@LB@3'-UUU...CUGUA GCCAUUAUUUAUU G-5'@LB@ | |@LB@ 44 1@LB@@LB@@LB@Energy -11.22 kcal/mol@LB@Hybridization Energy -27.55 kcal/mol@LB@Unfolding Energy - mRNA 10.0434 kcal/mol@LB@Unfolding Energy - sRNA 6.29139 kcal/mol@LB@@LB@Position - mRNA 189 -- 234@LB@Position - sRNA 2 -- 43@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 124 |
0.01977 |
0.5155 |
b1920 |
fliY |
-11.21 |
0.054671 |
192 -- 201 |
49 -- 58 |
cystine transporter subunit |
|
_____________191________202\n_____________|__________|\n5'-CCA...CAUUC__________UGAAA...UGC-3'\n______________GGGGUGAAUA\n______________|||||:||:|\n______________CCCCAUUUGU\n3'-UUU...UUUAU__________CUGUA...UCG-5'\n_____________|__________|\n_____________59_________48\n |
195 -- 201 |
49 -- 55 |
-14.4557 kcal/mol |
2.52037 kcal/mol |
0.729386 kcal/mol |
191 202@LB@ | |@LB@5'-CCA...CAUUC UGAAA...UGC-3'@LB@ GGGGUGAAUA@LB@ |||||:||:|@LB@ CCCCAUUUGU@LB@3'-UUU...UUUAU CUGUA...UCG-5'@LB@ | |@LB@ 59 48@LB@@LB@@LB@Energy -11.21 kcal/mol@LB@Hybridization Energy -14.4557 kcal/mol@LB@Unfolding Energy - mRNA 2.52037 kcal/mol@LB@Unfolding Energy - sRNA 0.729386 kcal/mol@LB@@LB@Position - mRNA 192 -- 201@LB@Position - sRNA 49 -- 58@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 90 |
0.01478 |
0.5059 |
b0740 |
tolB |
-11.20 |
0.054749 |
186 -- 207 |
1 -- 21 |
periplasmic protein |
|
_____________185_____________________208\n_____________|_______________________|\n5'-UCC...GUCCA_______GAGAU___________AGGCA...CCG-3'\n______________GAUAAGG_____AUGAUGA_AGC\n______________:||||:|_____|||||||_|||\n______________UUAUUUC_____UACUACU_UCG\n3'-UUU...AUUAU_______AAU_________A___-5'\n_____________|______________________|\n_____________22_____________________1\n |
198 -- 204 |
5 -- 11 |
-16.1118 kcal/mol |
4.84175 kcal/mol |
0.0669945 kcal/mol |
185 208@LB@ | |@LB@5'-UCC...GUCCA GAGAU AGGCA...CCG-3'@LB@ GAUAAGG AUGAUGA AGC@LB@ :||||:| ||||||| |||@LB@ UUAUUUC UACUACU UCG@LB@3'-UUU...AUUAU AAU A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -16.1118 kcal/mol@LB@Unfolding Energy - mRNA 4.84175 kcal/mol@LB@Unfolding Energy - sRNA 0.0669945 kcal/mol@LB@@LB@Position - mRNA 186 -- 207@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 116 |
0.01846 |
0.5155 |
b3349 |
slyD |
-11.19 |
0.055067 |
245 -- 274 |
8 -- 47 |
FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) |
|
_____________244______________________________________275\n_____________|________________________________________|\n5'-UGU...CAGGU____A__________________UGUU_____________GUCUC...ACU-3'\n______________ACGU_CAGAA______GACGGUG________GGUUGAUGA\n______________||:|_|||||______||||||:________:|||:||||\n______________UGUA_GUCUU______CUGCCAU________UCAAUUACU\n3'-UUU...UUGUC____A_____UACUUA_______UAUUUAUU_________ACUAUCG-5'\n_____________|________________________________________|\n_____________48_______________________________________7\n |
268 -- 274 |
8 -- 14 |
-23.1983 kcal/mol |
5.6913 kcal/mol |
6.31565 kcal/mol |
244 275@LB@ | |@LB@5'-UGU...CAGGU A UGUU GUCUC...ACU-3'@LB@ ACGU CAGAA GACGGUG GGUUGAUGA@LB@ ||:| ||||| ||||||: :|||:||||@LB@ UGUA GUCUU CUGCCAU UCAAUUACU@LB@3'-UUU...UUGUC A UACUUA UAUUUAUU ACUAUCG-5'@LB@ | |@LB@ 48 7@LB@@LB@@LB@Energy -11.19 kcal/mol@LB@Hybridization Energy -23.1983 kcal/mol@LB@Unfolding Energy - mRNA 5.6913 kcal/mol@LB@Unfolding Energy - sRNA 6.31565 kcal/mol@LB@@LB@Position - mRNA 245 -- 274@LB@Position - sRNA 8 -- 47@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 8 -- 14@LB@ |
