117 |
0.01855 |
0.5155 |
b3011 |
yqhD |
-12.43 |
0.029448 |
82 -- 109 |
34 -- 64 |
aldehyde reductase NADPH-dependent |
|
_____________81________________________________110\n_____________|_________________________________|\n5'-GUU...CUGGA________CA____________GG_________GCAUU...UGA-3'\n______________GAAAUAGG_______AGACAUU__CAGAAAUGA\n______________||||||||_______|||||||__|||||||||\n______________CUUUAUCC_______UCUGUAA__GUCUUUACU\n3'-UUU...GCCAA________CCAUUUG__________________UACUG...UCG-5'\n_____________|_________________________________|\n_____________65________________________________33\n |
83 -- 89 |
57 -- 63 |
-24.9555 kcal/mol |
6.2587 kcal/mol |
6.27071 kcal/mol |
81 110@LB@ | |@LB@5'-GUU...CUGGA CA GG GCAUU...UGA-3'@LB@ GAAAUAGG AGACAUU CAGAAAUGA@LB@ |||||||| ||||||| |||||||||@LB@ CUUUAUCC UCUGUAA GUCUUUACU@LB@3'-UUU...GCCAA CCAUUUG UACUG...UCG-5'@LB@ | |@LB@ 65 33@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -24.9555 kcal/mol@LB@Unfolding Energy - mRNA 6.2587 kcal/mol@LB@Unfolding Energy - sRNA 6.27071 kcal/mol@LB@@LB@Position - mRNA 82 -- 109@LB@Position - sRNA 34 -- 64@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 57 -- 63@LB@ |
67 |
0.009794 |
0.4523 |
b2823 |
ppdC |
-12.40 |
0.029910 |
245 -- 275 |
3 -- 28 |
putative prepilin peptidase-dependent protein |
|
_____________244_____________________________276\n_____________|_______________________________|\n5'-ACG...CCGGA_______UUGGC_____U_____________AUUGU...UCC-3'\n______________GGUAAUG_____GAUGG_GUUGAUGGUGAUG\n______________||||||:_____:||::_|||:|||:||||:\n______________CCAUUAU_____UUAUU_CAAUUACUACUAU\n3'-UUU...UACUG_________________U_____________CG-5'\n_____________|_______________________________|\n_____________29______________________________2\n |
269 -- 275 |
3 -- 9 |
-21.5159 kcal/mol |
8.35299 kcal/mol |
0.766561 kcal/mol |
244 276@LB@ | |@LB@5'-ACG...CCGGA UUGGC U AUUGU...UCC-3'@LB@ GGUAAUG GAUGG GUUGAUGGUGAUG@LB@ ||||||: :||:: |||:|||:||||:@LB@ CCAUUAU UUAUU CAAUUACUACUAU@LB@3'-UUU...UACUG U CG-5'@LB@ | |@LB@ 29 2@LB@@LB@@LB@Energy -12.40 kcal/mol@LB@Hybridization Energy -21.5159 kcal/mol@LB@Unfolding Energy - mRNA 8.35299 kcal/mol@LB@Unfolding Energy - sRNA 0.766561 kcal/mol@LB@@LB@Position - mRNA 245 -- 275@LB@Position - sRNA 3 -- 28@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 3 -- 9@LB@ |
57 |
0.007764 |
0.4472 |
b0585 |
fes |
-12.40 |
0.029926 |
182 -- 237 |
1 -- 55 |
enterobactin/ferrienterobactin esterase |
|
_____________181___________________________________________________________238\n_____________|_____________________________________________________________|\n5'-CAU...GCACA_______U__G____________U_______CGU____AGU__GA_____GAGC_______AGUCG...GGU-3'\n______________GUAAACA_GG_GUU_____AUGG_GUGACGG___UAAA___AG__AGUGA____UGGUGGC\n______________|||||||_|:_:||_____|||:_:||||||___||||___||__|:|||____||:|:||\n______________CAUUUGU_CU_UAA_____UACU_UACUGCC___AUUU___UC__UUACU____ACUAUCG\n3'-UUU...AUCCC__________G___GUCUU____________AUU____AUU__AA________________-5'\n_____________|____________________________________________________________|\n_____________56___________________________________________________________1\n |
231 -- 237 |
1 -- 7 |
-34.1879 kcal/mol |
15.4551 kcal/mol |
6.33758 kcal/mol |
181 238@LB@ | |@LB@5'-CAU...GCACA U G U CGU AGU GA GAGC AGUCG...GGU-3'@LB@ GUAAACA GG GUU AUGG GUGACGG UAAA AG AGUGA UGGUGGC@LB@ ||||||| |: :|| |||: :|||||| |||| || |:||| ||:|:||@LB@ CAUUUGU CU UAA UACU UACUGCC AUUU UC UUACU ACUAUCG@LB@3'-UUU...AUCCC G GUCUU AUU AUU AA -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -12.40 kcal/mol@LB@Hybridization Energy -34.1879 kcal/mol@LB@Unfolding Energy - mRNA 15.4551 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 182 -- 237@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 1 -- 7@LB@ |
69 |
0.009861 |
0.4523 |
b0879 |
macB |
-12.35 |
0.030572 |
144 -- 182 |
1 -- 59 |
macrolide ABC transporter peremase/ATPase |
|
_____________143___________________________________________________________183\n_____________|_____________________________________________________________|\n5'-AAU...GUCAA____CUUG_____________________________________________________CAAAC...CGG-3'\n______________AGGG____AAGCGGGC_______GAUGAA_G_UGGUGAU____________UGGUGA_GGC\n______________||||____||:|:|:|_______:|||||_|_:|||:||____________||:|||_:||\n______________UCCC____UUUGUCUG_______UUACUU_C_GCCAUUA____________ACUACU_UCG\n3'-UUU...CUUUA____CA__________UAAGUCU______A_U_______UUUAUUUCAAUU______A___-5'\n_____________|____________________________________________________________|\n_____________60___________________________________________________________1\n |
167 -- 173 |
23 -- 29 |
-29.0987 kcal/mol |
10.4067 kcal/mol |
6.33764 kcal/mol |
143 183@LB@ | |@LB@5'-AAU...GUCAA CUUG CAAAC...CGG-3'@LB@ AGGG AAGCGGGC GAUGAA G UGGUGAU UGGUGA GGC@LB@ |||| ||:|:|:| :||||| | :|||:|| ||:||| :||@LB@ UCCC UUUGUCUG UUACUU C GCCAUUA ACUACU UCG@LB@3'-UUU...CUUUA CA UAAGUCU A U UUUAUUUCAAUU A -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -29.0987 kcal/mol@LB@Unfolding Energy - mRNA 10.4067 kcal/mol@LB@Unfolding Energy - sRNA 6.33764 kcal/mol@LB@@LB@Position - mRNA 144 -- 182@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 23 -- 29@LB@ |
81 |
0.01129 |
0.4523 |
b1718 |
infC |
-12.35 |
0.030679 |
105 -- 150 |
1 -- 56 |
translation initiation factor IF-3 |
|
_____________104______________________________________________________151\n_____________|________________________________________________________|\n5'-UUG...GCCGU___________C________GCAUG__________________GAUC_________UGCAA...AGC-3'\n______________GGUAA__AGAC___UGGGAA_____GACG____UAAAUGAAGU____GA_GA_AGC\n______________|||||__||||___::|:||_____||||____|||||:||||____||_||_|||\n______________CCAUU__UCUG___GUCUUU_____CUGC____AUUUAUUUCA____CU_CU_UCG\n3'-UUU...UAUCC_____UG____UAA______ACUUA____CAUU__________AUUA__A__A___-5'\n_____________|_______________________________________________________|\n_____________57______________________________________________________1\n |
133 -- 139 |
14 -- 20 |
-27.0853 kcal/mol |
8.40012 kcal/mol |
6.33758 kcal/mol |
104 151@LB@ | |@LB@5'-UUG...GCCGU C GCAUG GAUC UGCAA...AGC-3'@LB@ GGUAA AGAC UGGGAA GACG UAAAUGAAGU GA GA AGC@LB@ ||||| |||| ::|:|| |||| |||||:|||| || || |||@LB@ CCAUU UCUG GUCUUU CUGC AUUUAUUUCA CU CU UCG@LB@3'-UUU...UAUCC UG UAA ACUUA CAUU AUUA A A -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -27.0853 kcal/mol@LB@Unfolding Energy - mRNA 8.40012 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 105 -- 150@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 14 -- 20@LB@ |
42 |
0.004307 |
0.3367 |
b4051 |
qorA |
-12.29 |
0.031673 |
118 -- 140 |
3 -- 26 |
quinone oxidoreductase NADPH-dependent |
|
_____________117______________________141\n_____________|________________________|\n5'-CGC...UGCCA_______________CC_______AAGAA...UCG-3'\n______________UAGUGAAUGGAGUUA__GA_GAUA\n______________||:|:|||::|||||__||_||||\n______________AUUAUUUAUUUCAAU__CU_CUAU\n3'-UUU...CUGCC_______________UA__A____CG-5'\n_____________|________________________|\n_____________27_______________________2\n |
126 -- 132 |
12 -- 18 |
-16.4059 kcal/mol |
3.53962 kcal/mol |
0.580109 kcal/mol |
117 141@LB@ | |@LB@5'-CGC...UGCCA CC AAGAA...UCG-3'@LB@ UAGUGAAUGGAGUUA GA GAUA@LB@ ||:|:|||::||||| || ||||@LB@ AUUAUUUAUUUCAAU CU CUAU@LB@3'-UUU...CUGCC UA A CG-5'@LB@ | |@LB@ 27 2@LB@@LB@@LB@Energy -12.29 kcal/mol@LB@Hybridization Energy -16.4059 kcal/mol@LB@Unfolding Energy - mRNA 3.53962 kcal/mol@LB@Unfolding Energy - sRNA 0.580109 kcal/mol@LB@@LB@Position - mRNA 118 -- 140@LB@Position - sRNA 3 -- 26@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 12 -- 18@LB@ |
89 |
0.01433 |
0.5059 |
b0636 |
rlmH |
-12.18 |
0.033475 |
189 -- 207 |
1 -- 19 |
23S rRNA m(3)Psi1915 pseudouridine methyltransferase SAM-dependent |
|
_____________188__________________208\n_____________|____________________|\n5'-CGG...AACUC___________C________UGCAA...UCG-3'\n______________UGGAGUUAAUG_GUGA_AGC\n______________|::||||||||_:|||_|||\n______________AUUUCAAUUAC_UACU_UCG\n3'-UUU...UAUUU________________A___-5'\n_____________|___________________|\n_____________20__________________1\n |
193 -- 199 |
9 -- 15 |
-16.4949 kcal/mol |
4.25175 kcal/mol |
0.0638423 kcal/mol |
188 208@LB@ | |@LB@5'-CGG...AACUC C UGCAA...UCG-3'@LB@ UGGAGUUAAUG GUGA AGC@LB@ |::|||||||| :||| |||@LB@ AUUUCAAUUAC UACU UCG@LB@3'-UUU...UAUUU A -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -16.4949 kcal/mol@LB@Unfolding Energy - mRNA 4.25175 kcal/mol@LB@Unfolding Energy - sRNA 0.0638423 kcal/mol@LB@@LB@Position - mRNA 189 -- 207@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 9 -- 15@LB@ |
55 |
0.006796 |
0.4056 |
b3192 |
mlaC |
-12.17 |
0.033659 |
167 -- 226 |
1 -- 57 |
ABC transporter maintaining OM lipid asymmetry periplasmic binding protein |
|
_____________166_______________________________________________________________227\n_____________|_________________________________________________________________|\n5'-GGA...CCUGU_____C______AAUAAU____________CC____C_____UU____C_U___________C__UUUGC...AGG-3'\n______________GGGUA_AAC_GA______UUCAGGA__GAA__GACG___AUG__UAAA_G_UUAAUGAUGGU_GC\n______________|||||_|||_||______|||||:|__|||__||||___||:__||||_|_|||||||||:|_||\n______________CCCAU_UUG_CU______AAGUCUU__CUU__CUGC___UAU__AUUU_C_AAUUACUACUA_CG\n3'-UUU...UUAUC_________U__GU___________UA___A_____CAU___UU__________________U__-5'\n_____________|________________________________________________________________|\n_____________58_______________________________________________________________1\n |
217 -- 223 |
4 -- 10 |
-32.157 kcal/mol |
13.6506 kcal/mol |
6.33758 kcal/mol |
166 227@LB@ | |@LB@5'-GGA...CCUGU C AAUAAU CC C UU C U C UUUGC...AGG-3'@LB@ GGGUA AAC GA UUCAGGA GAA GACG AUG UAAA G UUAAUGAUGGU GC@LB@ ||||| ||| || |||||:| ||| |||| ||: |||| | |||||||||:| ||@LB@ CCCAU UUG CU AAGUCUU CUU CUGC UAU AUUU C AAUUACUACUA CG@LB@3'-UUU...UUAUC U GU UA A CAU UU U -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -32.157 kcal/mol@LB@Unfolding Energy - mRNA 13.6506 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 167 -- 226@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 4 -- 10@LB@ |
41 |
0.004182 |
0.3349 |
b3771 |
ilvD |
-12.17 |
0.033695 |
175 -- 200 |
14 -- 53 |
dihydroxyacid dehydratase |
|
_____________174______________________________________201\n_____________|________________________________________|\n5'-GCG...UUACG_________C_________________GA___________AUGCC...GUA-3'\n______________AGACAGACA_______________UGG__GUAAAUAAAGU\n______________|:|||||||_______________:||__:||||||||||\n______________UUUGUCUGU_______________GCC__UAUUUAUUUCA\n3'-UUU...CCCCA_________AAGUCUUUACUUACU___AU___________AUUAC...UCG-5'\n_____________|________________________________________|\n_____________54_______________________________________13\n |
194 -- 200 |
14 -- 20 |
-22.054 kcal/mol |
3.56189 kcal/mol |
6.32552 kcal/mol |
174 201@LB@ | |@LB@5'-GCG...UUACG C GA AUGCC...GUA-3'@LB@ AGACAGACA UGG GUAAAUAAAGU@LB@ |:||||||| :|| :||||||||||@LB@ UUUGUCUGU GCC UAUUUAUUUCA@LB@3'-UUU...CCCCA AAGUCUUUACUUACU AU AUUAC...UCG-5'@LB@ | |@LB@ 54 13@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -22.054 kcal/mol@LB@Unfolding Energy - mRNA 3.56189 kcal/mol@LB@Unfolding Energy - sRNA 6.32552 kcal/mol@LB@@LB@Position - mRNA 175 -- 200@LB@Position - sRNA 14 -- 53@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 14 -- 20@LB@ |
185 |
0.03096 |
0.5492 |
b1686 |
menI |
-12.09 |
0.035132 |
263 -- 300 |
22 -- 58 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________262____________________________________300\n_____________|______________________________________|\n5'-GGC...AUGGU_____UCCU_________CUU_____CAUAU________-3'\n______________GGGGU____GGAUAUUCG____UGAA_____UGGUGAUG\n______________|||||____:||:||||:____||||_____:|||:||:\n______________CCCCA____UCUGUAAGU____ACUU_____GCCAUUAU\n3'-UUU...UUUAU_____UUUG_________CUUU____ACU__________UUAUU...UCG-5'\n_____________|_______________________________________|\n_____________59______________________________________21\n |
294 -- 300 |
22 -- 28 |
-26.9755 kcal/mol |
8.57608 kcal/mol |
6.31389 kcal/mol |
262 300@LB@ | |@LB@5'-GGC...AUGGU UCCU CUU CAUAU -3'@LB@ GGGGU GGAUAUUCG UGAA UGGUGAUG@LB@ ||||| :||:||||: |||| :|||:||:@LB@ CCCCA UCUGUAAGU ACUU GCCAUUAU@LB@3'-UUU...UUUAU UUUG CUUU ACU UUAUU...UCG-5'@LB@ | |@LB@ 59 21@LB@@LB@@LB@Energy -12.09 kcal/mol@LB@Hybridization Energy -26.9755 kcal/mol@LB@Unfolding Energy - mRNA 8.57608 kcal/mol@LB@Unfolding Energy - sRNA 6.31389 kcal/mol@LB@@LB@Position - mRNA 263 -- 300@LB@Position - sRNA 22 -- 58@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 22 -- 28@LB@ |