143 |
0.02405 |
0.526 |
b3292 |
zntR |
-11.17 |
0.055543 |
275 -- 285 |
1 -- 12 |
zntA gene transcriptional activator |
|
_____________274__________286\n_____________|____________|\n5'-UGA...CAGCA____________AUGAA...CUG-3'\n______________GAUGAUGG_AGC\n______________:||||||:_|||\n______________UUACUACU_UCG\n3'-UUU...UUCAA________A___-5'\n_____________|___________|\n_____________13__________1\n |
276 -- 282 |
5 -- 11 |
-12.3439 kcal/mol |
1.13072 kcal/mol |
0.0394463 kcal/mol |
274 286@LB@ | |@LB@5'-UGA...CAGCA AUGAA...CUG-3'@LB@ GAUGAUGG AGC@LB@ :||||||: |||@LB@ UUACUACU UCG@LB@3'-UUU...UUCAA A -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -12.3439 kcal/mol@LB@Unfolding Energy - mRNA 1.13072 kcal/mol@LB@Unfolding Energy - sRNA 0.0394463 kcal/mol@LB@@LB@Position - mRNA 275 -- 285@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 5 -- 11@LB@ |
196 |
0.0332 |
0.554 |
b0128 |
yadH |
-11.13 |
0.056665 |
104 -- 121 |
39 -- 55 |
putative ABC transporter permease |
|
_____________103________________122\n_____________|__________________|\n5'-UUA...GUUAA_______G__________UAUUA...UCA-3'\n______________GUGAGCA_GGCAUUCAGG\n______________||:|:||_|:|||||||:\n______________CAUUUGU_CUGUAAGUCU\n3'-UUU...AUCCC__________________UUACU...UCG-5'\n_____________|__________________|\n_____________56_________________38\n |
114 -- 120 |
40 -- 46 |
-20.6932 kcal/mol |
3.311 kcal/mol |
6.24918 kcal/mol |
103 122@LB@ | |@LB@5'-UUA...GUUAA G UAUUA...UCA-3'@LB@ GUGAGCA GGCAUUCAGG@LB@ ||:|:|| |:|||||||:@LB@ CAUUUGU CUGUAAGUCU@LB@3'-UUU...AUCCC UUACU...UCG-5'@LB@ | |@LB@ 56 38@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -20.6932 kcal/mol@LB@Unfolding Energy - mRNA 3.311 kcal/mol@LB@Unfolding Energy - sRNA 6.24918 kcal/mol@LB@@LB@Position - mRNA 104 -- 121@LB@Position - sRNA 39 -- 55@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 40 -- 46@LB@ |
144 |
0.02445 |
0.526 |
b3441 |
yhhY |
-11.04 |
0.059403 |
187 -- 218 |
22 -- 53 |
aminoacyl nucleotide detoxifying acetyltransferase |
|
_____________186________________________________219\n_____________|__________________________________|\n5'-CCC...CCCCA__GA_____A______________GAUA______CGCCA...UGC-3'\n______________AA__GGACA___AGGAAUGAGUGA____GUAAUA\n______________||__:||||___||:|||||:|||____||||||\n______________UU__UCUGU___UCUUUACUUACU____CAUUAU\n3'-UUU...CCCCA__UG_____AAG____________GC________UUAUU...UCG-5'\n_____________|__________________________________|\n_____________54_________________________________21\n |
202 -- 208 |
30 -- 36 |
-22.9472 kcal/mol |
5.59747 kcal/mol |
6.31329 kcal/mol |
186 219@LB@ | |@LB@5'-CCC...CCCCA GA A GAUA CGCCA...UGC-3'@LB@ AA GGACA AGGAAUGAGUGA GUAAUA@LB@ || :|||| ||:|||||:||| ||||||@LB@ UU UCUGU UCUUUACUUACU CAUUAU@LB@3'-UUU...CCCCA UG AAG GC UUAUU...UCG-5'@LB@ | |@LB@ 54 21@LB@@LB@@LB@Energy -11.04 kcal/mol@LB@Hybridization Energy -22.9472 kcal/mol@LB@Unfolding Energy - mRNA 5.59747 kcal/mol@LB@Unfolding Energy - sRNA 6.31329 kcal/mol@LB@@LB@Position - mRNA 187 -- 218@LB@Position - sRNA 22 -- 53@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 30 -- 36@LB@ |
134 |
0.02184 |
0.526 |
b0034 |
caiF |
-11.03 |
0.059446 |
251 -- 259 |
1 -- 9 |
cai operon transcriptional activator |
|
_____________250_______260\n_____________|_________|\n5'-UGA...GAAUG_________UGAAA...AUU-3'\n______________GAUGAUGGC\n______________||||||:||\n______________CUACUAUCG\n3'-UUU...AAUUA_________-5'\n_____________|________|\n_____________10_______1\n |
253 -- 259 |
1 -- 7 |
-13.9707 kcal/mol |
2.91573 kcal/mol |
0.0200155 kcal/mol |
250 260@LB@ | |@LB@5'-UGA...GAAUG UGAAA...AUU-3'@LB@ GAUGAUGGC@LB@ ||||||:||@LB@ CUACUAUCG@LB@3'-UUU...AAUUA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -13.9707 kcal/mol@LB@Unfolding Energy - mRNA 2.91573 kcal/mol@LB@Unfolding Energy - sRNA 0.0200155 kcal/mol@LB@@LB@Position - mRNA 251 -- 259@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 1 -- 7@LB@ |
31 |
0.00291 |
0.3081 |
b1205 |
ychH |
-11.03 |
0.059536 |
152 -- 163 |
53 -- 64 |
DUF2583 family putative inner membrane protein |
|
_____________151__________164\n_____________|____________|\n5'-CAA...CAUAA____G_______UUCCC...UAC-3'\n______________GGAA_AGGGGUA\n______________|:||_|||||||\n______________CUUU_UCCCCAU\n3'-UUU...GCCAA____A_______UUGUC...UCG-5'\n_____________|____________|\n_____________65___________52\n |
157 -- 163 |
53 -- 59 |
-13.5677 kcal/mol |
2.46117 kcal/mol |
0.0747267 kcal/mol |
151 164@LB@ | |@LB@5'-CAA...CAUAA G UUCCC...UAC-3'@LB@ GGAA AGGGGUA@LB@ |:|| |||||||@LB@ CUUU UCCCCAU@LB@3'-UUU...GCCAA A UUGUC...UCG-5'@LB@ | |@LB@ 65 52@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -13.5677 kcal/mol@LB@Unfolding Energy - mRNA 2.46117 kcal/mol@LB@Unfolding Energy - sRNA 0.0747267 kcal/mol@LB@@LB@Position - mRNA 152 -- 163@LB@Position - sRNA 53 -- 64@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 53 -- 59@LB@ |
130 |
0.02079 |
0.5217 |
b3455 |
livG |
-10.98 |
0.060940 |
96 -- 122 |
4 -- 29 |
branched-chain amino acid ABC transporter ATPase |
|
_____________95__________________________123\n_____________|___________________________|\n5'-AUG...AUGCU_______UU_____U_C__________CUGGC...UCG-3'\n______________CGGUGGU__GAUGG_G_UGAUGAUGAU\n______________||||::|__:||::_|_|:||||||||\n______________GCCAUUA__UUAUU_C_AUUACUACUA\n3'-UUU...UUACU_______U______U_A__________UCG-5'\n_____________|___________________________|\n_____________30__________________________3\n |
116 -- 122 |
4 -- 10 |
-20.0623 kcal/mol |
6.95142 kcal/mol |
2.12698 kcal/mol |
95 123@LB@ | |@LB@5'-AUG...AUGCU UU U C CUGGC...UCG-3'@LB@ CGGUGGU GAUGG G UGAUGAUGAU@LB@ ||||::| :||:: | |:||||||||@LB@ GCCAUUA UUAUU C AUUACUACUA@LB@3'-UUU...UUACU U U A UCG-5'@LB@ | |@LB@ 30 3@LB@@LB@@LB@Energy -10.98 kcal/mol@LB@Hybridization Energy -20.0623 kcal/mol@LB@Unfolding Energy - mRNA 6.95142 kcal/mol@LB@Unfolding Energy - sRNA 2.12698 kcal/mol@LB@@LB@Position - mRNA 96 -- 122@LB@Position - sRNA 4 -- 29@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 4 -- 10@LB@ |
108 |
0.01698 |
0.5123 |
b0078 |
ilvH |
-10.97 |
0.061484 |
141 -- 180 |
1 -- 51 |
acetolactate synthase 3 small subunit valine-sensitive |
|
_____________140_________________________________________________181\n_____________|___________________________________________________|\n5'-GCC...CCGAU______UCG___________________________AU_______UA____AAAAC...UGA-3'\n______________GCAGAU___CGGG_______GGCGG_AAUGGAUGAA____GUGGU___AGC\n______________:||||:___|:|:_______|:|||_|||::||:||____:||:|___|||\n______________UGUCUG___GUCU_______CUGCC_UUAUUUAUUU____UACUA___UCG\n3'-UUU...CCAUU______UAA____UUACUUA_____A__________CAAU_____CUA___-5'\n_____________|__________________________________________________|\n_____________52_________________________________________________1\n |
162 -- 168 |
16 -- 22 |
-27.7823 kcal/mol |
10.4814 kcal/mol |
6.33528 kcal/mol |
140 181@LB@ | |@LB@5'-GCC...CCGAU UCG AU UA AAAAC...UGA-3'@LB@ GCAGAU CGGG GGCGG AAUGGAUGAA GUGGU AGC@LB@ :||||: |:|: |:||| |||::||:|| :||:| |||@LB@ UGUCUG GUCU CUGCC UUAUUUAUUU UACUA UCG@LB@3'-UUU...CCAUU UAA UUACUUA A CAAU CUA -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -10.97 kcal/mol@LB@Hybridization Energy -27.7823 kcal/mol@LB@Unfolding Energy - mRNA 10.4814 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 141 -- 180@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 16 -- 22@LB@ |
145 |
0.02447 |
0.526 |
b4518 |
ymdF |
-10.96 |
0.061577 |
258 -- 296 |
23 -- 64 |
KGG family protein |
|
_____________257________________________________________________297\n_____________|__________________________________________________|\n5'-UUU...CAUCA____C___UAAAAAA_________C___GC_____________G______UUCA-3'\n______________GAAG_AGG_______GGUGGACAG_ACA_____________GG_GGUAAU\n______________|||:_|||_______|||::||||_|||_____________|:_||||||\n______________CUUU_UCC_______CCAUUUGUC_UGU_____________CU_CCAUUA\n3'-UUU...GCCAA____A_______________________AAGUCUUUACUUA__G______UUUAU...UCG-5'\n_____________|__________________________________________________|\n_____________65_________________________________________________22\n |
275 -- 281 |
48 -- 54 |
-22.543 kcal/mol |
5.2615 kcal/mol |
6.31898 kcal/mol |
257 297@LB@ | |@LB@5'-UUU...CAUCA C UAAAAAA C GC G UUCA-3'@LB@ GAAG AGG GGUGGACAG ACA GG GGUAAU@LB@ |||: ||| |||::|||| ||| |: ||||||@LB@ CUUU UCC CCAUUUGUC UGU CU CCAUUA@LB@3'-UUU...GCCAA A AAGUCUUUACUUA G UUUAU...UCG-5'@LB@ | |@LB@ 65 22@LB@@LB@@LB@Energy -10.96 kcal/mol@LB@Hybridization Energy -22.543 kcal/mol@LB@Unfolding Energy - mRNA 5.2615 kcal/mol@LB@Unfolding Energy - sRNA 6.31898 kcal/mol@LB@@LB@Position - mRNA 258 -- 296@LB@Position - sRNA 23 -- 64@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 48 -- 54@LB@ |
33 |
0.003163 |
0.3086 |
b4372 |
holD |
-10.86 |
0.064637 |
82 -- 98 |
44 -- 58 |
DNA polymerase III psi subunit |
|
_____________81________________99\n_____________|_________________|\n5'-AGG...UUGCC_______AU________GGAAU...UCC-3'\n______________GGGGUAA__GCAGACAU\n______________|||||||__:|||||||\n______________CCCCAUU__UGUCUGUA\n3'-UUU...UUUAU_________________AGUCU...UCG-5'\n_____________|_________________|\n_____________59________________43\n |
92 -- 98 |
44 -- 50 |
-21.4924 kcal/mol |
4.96784 kcal/mol |
5.66232 kcal/mol |
81 99@LB@ | |@LB@5'-AGG...UUGCC AU GGAAU...UCC-3'@LB@ GGGGUAA GCAGACAU@LB@ ||||||| :|||||||@LB@ CCCCAUU UGUCUGUA@LB@3'-UUU...UUUAU AGUCU...UCG-5'@LB@ | |@LB@ 59 43@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -21.4924 kcal/mol@LB@Unfolding Energy - mRNA 4.96784 kcal/mol@LB@Unfolding Energy - sRNA 5.66232 kcal/mol@LB@@LB@Position - mRNA 82 -- 98@LB@Position - sRNA 44 -- 58@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 44 -- 50@LB@ |
68 |
0.00983 |
0.4523 |
b1321 |
ycjX |
-10.80 |
0.066674 |
34 -- 41 |
55 -- 62 |
DUF463 family protein puatative P-loop NTPase |
|
_____________33_______42\n_____________|________|\n5'-UGA...UAAAU________ACAUA...CAG-3'\n______________AGUAGGGG\n______________|:||||||\n______________UUAUCCCC\n3'-UUU...CAACU________AUUUG...UCG-5'\n_____________|________|\n_____________63_______54\n |
35 -- 41 |
55 -- 61 |
-12.2037 kcal/mol |
1.3787 kcal/mol |
0.0270923 kcal/mol |
33 42@LB@ | |@LB@5'-UGA...UAAAU ACAUA...CAG-3'@LB@ AGUAGGGG@LB@ |:||||||@LB@ UUAUCCCC@LB@3'-UUU...CAACU AUUUG...UCG-5'@LB@ | |@LB@ 63 54@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -12.2037 kcal/mol@LB@Unfolding Energy - mRNA 1.3787 kcal/mol@LB@Unfolding Energy - sRNA 0.0270923 kcal/mol@LB@@LB@Position - mRNA 34 -- 41@LB@Position - sRNA 55 -- 62@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 55 -- 61@LB@ |