| 11 |
0.0003561 |
0.1063 |
b3857 |
mobA |
-16.95 |
0.002119 |
239 -- 276 |
15 -- 59 |
molybdopterin-guanine dinucleotide synthase |
|
_____________238_______________________________________________277\n_____________|_________________________________________________|\n5'-UCC...CUGGC___C______GC___________________G_____C___________GAUUG...AAC-3'\n______________AGG_GGUAAA__CAGAC__________GAAU_GGCGG__GUAGAUAAAG\n______________|||_||||||__|||||__________||||_|:|||__:||:||||||\n______________UCC_CCAUUU__GUCUG__________CUUA_CUGCC__UAUUUAUUUC\n3'-UUU...CUUUA_________________UAAGUCUUUA__________AU__________AAUUA...UCG-5'\n_____________|_________________________________________________|\n_____________60________________________________________________14\n |
270 -- 276 |
15 -- 21 |
-31.2728 kcal/mol |
7.99479 kcal/mol |
6.32587 kcal/mol |
238 277@LB@ | |@LB@5'-UCC...CUGGC C GC G C GAUUG...AAC-3'@LB@ AGG GGUAAA CAGAC GAAU GGCGG GUAGAUAAAG@LB@ ||| |||||| ||||| |||| |:||| :||:||||||@LB@ UCC CCAUUU GUCUG CUUA CUGCC UAUUUAUUUC@LB@3'-UUU...CUUUA UAAGUCUUUA AU AAUUA...UCG-5'@LB@ | |@LB@ 60 14@LB@@LB@@LB@Energy -16.95 kcal/mol@LB@Hybridization Energy -31.2728 kcal/mol@LB@Unfolding Energy - mRNA 7.99479 kcal/mol@LB@Unfolding Energy - sRNA 6.32587 kcal/mol@LB@@LB@Position - mRNA 239 -- 276@LB@Position - sRNA 15 -- 59@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 5 |
3.022e-05 |
0.01984 |
b4553 |
ysaB |
-16.91 |
0.002179 |
166 -- 209 |
3 -- 54 |
uncharacterized protein |
|
_____________165__________________________________________________210\n_____________|____________________________________________________|\n5'-UCA...AUAAA___UA____UCACCUGCAAACCA_____________________________AACGC...AUC-3'\n______________UAA__AGAC______________GACGGUAAU________UUAAUGAUGAUG\n______________|||__||||______________|||||||||________|||||||||||:\n______________AUU__UCUG______________CUGCCAUUA________AAUUACUACUAU\n3'-UUU...UCCCC___UG____UAAGUCUUUACUUA_________UUUAUUUC____________CG-5'\n_____________|____________________________________________________|\n_____________55___________________________________________________2\n |
203 -- 209 |
3 -- 9 |
-28.2861 kcal/mol |
5.03949 kcal/mol |
6.3375 kcal/mol |
165 210@LB@ | |@LB@5'-UCA...AUAAA UA UCACCUGCAAACCA AACGC...AUC-3'@LB@ UAA AGAC GACGGUAAU UUAAUGAUGAUG@LB@ ||| |||| ||||||||| |||||||||||:@LB@ AUU UCUG CUGCCAUUA AAUUACUACUAU@LB@3'-UUU...UCCCC UG UAAGUCUUUACUUA UUUAUUUC CG-5'@LB@ | |@LB@ 55 2@LB@@LB@@LB@Energy -16.91 kcal/mol@LB@Hybridization Energy -28.2861 kcal/mol@LB@Unfolding Energy - mRNA 5.03949 kcal/mol@LB@Unfolding Energy - sRNA 6.3375 kcal/mol@LB@@LB@Position - mRNA 166 -- 209@LB@Position - sRNA 3 -- 54@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 3 |
3.826e-06 |
0.004187 |
b0090 |
murG |
-16.88 |
0.002220 |
177 -- 235 |
1 -- 51 |
N-acetylglucosaminyl transferase |
|
_____________176_________________________________________________________236\n_____________|___________________________________________________________|\n5'-AUU...AAAGC___________UAC_____UCAC____A_____C___G____CGA______________AGGCG...GUU-3'\n______________GCAGGCGUUUG___GAGGU____GAUG_GUGGU_AAG_AAAG___UUAAUGGUGAUGGC\n______________:|||:|:||::___||::|____||:|_||::|_||:_||||___||||||:||||:||\n______________UGUCUGUAAGU___CUUUA____CUGC_CAUUA_UUU_UUUC___AAUUACUACUAUCG\n3'-UUU...CCAUU___________________CUUA______________A_____________________-5'\n_____________|__________________________________________________________|\n_____________52_________________________________________________________1\n |
229 -- 235 |
1 -- 7 |
-39.4015 kcal/mol |
16.1862 kcal/mol |
6.33528 kcal/mol |
176 236@LB@ | |@LB@5'-AUU...AAAGC UAC UCAC A C G CGA AGGCG...GUU-3'@LB@ GCAGGCGUUUG GAGGU GAUG GUGGU AAG AAAG UUAAUGGUGAUGGC@LB@ :|||:|:||:: ||::| ||:| ||::| ||: |||| ||||||:||||:||@LB@ UGUCUGUAAGU CUUUA CUGC CAUUA UUU UUUC AAUUACUACUAUCG@LB@3'-UUU...CCAUU CUUA A -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -16.88 kcal/mol@LB@Hybridization Energy -39.4015 kcal/mol@LB@Unfolding Energy - mRNA 16.1862 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 177 -- 235@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 12 |
0.000426 |
0.1165 |
b2331 |
smrB |
-16.71 |
0.002472 |
163 -- 205 |
16 -- 57 |
putative DNA endonuclease |
|
_____________162____________________________________________206\n_____________|______________________________________________|\n5'-UCA...GAGUC________UGUA___AAA________A______A____________AAAGA...GAC-3'\n______________GGGUAAAC____GGA___UUAGAAAU_GA_GAC___GAUAAAUGAA\n______________||||||||____:||___|:||||||_:|_|||___:||||||:||\n______________CCCAUUUG____UCU___AGUCUUUA_UU_CUG___UUAUUUAUUU\n3'-UUU...UUAUC_______________GUA________C__A___CCA__________CAAUU...UCG-5'\n_____________|______________________________________________|\n_____________58_____________________________________________15\n |
199 -- 205 |
16 -- 22 |
-27.8577 kcal/mol |
4.82255 kcal/mol |
6.32306 kcal/mol |
162 206@LB@ | |@LB@5'-UCA...GAGUC UGUA AAA A A AAAGA...GAC-3'@LB@ GGGUAAAC GGA UUAGAAAU GA GAC GAUAAAUGAA@LB@ |||||||| :|| |:|||||| :| ||| :||||||:||@LB@ CCCAUUUG UCU AGUCUUUA UU CUG UUAUUUAUUU@LB@3'-UUU...UUAUC GUA C A CCA CAAUU...UCG-5'@LB@ | |@LB@ 58 15@LB@@LB@@LB@Energy -16.71 kcal/mol@LB@Hybridization Energy -27.8577 kcal/mol@LB@Unfolding Energy - mRNA 4.82255 kcal/mol@LB@Unfolding Energy - sRNA 6.32306 kcal/mol@LB@@LB@Position - mRNA 163 -- 205@LB@Position - sRNA 16 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 175 |
0.0283 |
0.531 |
b2048 |
cpsG |
-16.42 |
0.002969 |
89 -- 138 |
17 -- 58 |
phosphomannomutase |
|
_____________88___________________________________________________139\n_____________|____________________________________________________|\n5'-GGG...CGGAC___U_______UC_________C________CGAAACC______________CGACA...GCG-3'\n______________GGG_GUAAACG__GCA_UCAGG_AAUGAAUG_______GCGGU_GUAAAUAA\n______________|||_||||||:__:||_||||:_||||||||_______:||||_:|||||||\n______________CCC_CAUUUGU__UGU_AGUCU_UUACUUAC_______UGCCA_UAUUUAUU\n3'-UUU...UUUAU___________C____A__________________________U________UCAAU...UCG-5'\n_____________|____________________________________________________|\n_____________59___________________________________________________16\n |
132 -- 138 |
17 -- 23 |
-37.1596 kcal/mol |
14.4139 kcal/mol |
6.32276 kcal/mol |
88 139@LB@ | |@LB@5'-GGG...CGGAC U UC C CGAAACC CGACA...GCG-3'@LB@ GGG GUAAACG GCA UCAGG AAUGAAUG GCGGU GUAAAUAA@LB@ ||| ||||||: :|| ||||: |||||||| :|||| :|||||||@LB@ CCC CAUUUGU UGU AGUCU UUACUUAC UGCCA UAUUUAUU@LB@3'-UUU...UUUAU C A U UCAAU...UCG-5'@LB@ | |@LB@ 59 16@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -37.1596 kcal/mol@LB@Unfolding Energy - mRNA 14.4139 kcal/mol@LB@Unfolding Energy - sRNA 6.32276 kcal/mol@LB@@LB@Position - mRNA 89 -- 138@LB@Position - sRNA 17 -- 58@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 2 |
1.932e-06 |
0.003171 |
b1243 |
oppA |
-16.40 |
0.003005 |
12 -- 82 |
1 -- 59 |
oligopeptide ABC transporter periplasmic binding protein |
|
_____________11__________________________________________________________________________83\n_____________|___________________________________________________________________________|\n5'-UGU...UCGAC___________CAGUACGAAUC_____AA__U__UCGUC_____C__CAG____________C____________AAUAC...UCA-3'\n______________AGGGG_AGACA___________GACAU__GG_GA_____UGAAU_AC___AAUAAAUAAAGU____GGUGAUAGU\n______________|||||_|:|||___________|||||__:|_:|_____|||||_||___||||||||||||____|:||||||:\n______________UCCCC_UUUGU___________CUGUA__UC_UU_____ACUUA_UG___UUAUUUAUUUCA____CUACUAUCG\n3'-UUU...CUUUA_____A_____________________AG__U____________C__CCA____________AUUA_________-5'\n_____________|__________________________________________________________________________|\n_____________60_________________________________________________________________________1\n |
76 -- 82 |
1 -- 7 |
-40.1642 kcal/mol |
17.4223 kcal/mol |
6.33764 kcal/mol |
11 83@LB@ | |@LB@5'-UGU...UCGAC CAGUACGAAUC AA U UCGUC C CAG C AAUAC...UCA-3'@LB@ AGGGG AGACA GACAU GG GA UGAAU AC AAUAAAUAAAGU GGUGAUAGU@LB@ ||||| |:||| ||||| :| :| ||||| || |||||||||||| |:||||||:@LB@ UCCCC UUUGU CUGUA UC UU ACUUA UG UUAUUUAUUUCA CUACUAUCG@LB@3'-UUU...CUUUA A AG U C CCA AUUA -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -40.1642 kcal/mol@LB@Unfolding Energy - mRNA 17.4223 kcal/mol@LB@Unfolding Energy - sRNA 6.33764 kcal/mol@LB@@LB@Position - mRNA 12 -- 82@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 9 |
0.000223 |
0.08136 |
b1826 |
mgrB |
-16.34 |
0.003128 |
178 -- 244 |
1 -- 63 |
regulatory peptide for PhoPQ feedback inhibition |
|
_____________177______________________________________________________________________245\n_____________|________________________________________________________________________|\n5'-UAC...ACAUA_______U_________G_____________AAAGUUUC_____GUCGUUCU_______UC______U____UUGCU...AAU-3'\n______________AGGUAGG_G_AAACGGA_AUU__GGAGUGAA________GAUGG__________GGUUG__GUGGUG_UGGC\n______________|::||||_|_||||:||_|||__|:|:||||________||:||__________:|||:__:||:||_|:||\n______________UUUAUCC_C_UUUGUCU_UAA__CUUUACUU________CUGCC__________UCAAU__UACUAC_AUCG\n3'-UUU...CCAAC_______C_A_______G___GU________A____________AUUAUUUAUU_____________U____-5'\n_____________|_______________________________________________________________________|\n_____________64______________________________________________________________________1\n |
187 -- 193 |
47 -- 53 |
-38.9165 kcal/mol |
16.2325 kcal/mol |
6.344 kcal/mol |
177 245@LB@ | |@LB@5'-UAC...ACAUA U G AAAGUUUC GUCGUUCU UC U UUGCU...AAU-3'@LB@ AGGUAGG G AAACGGA AUU GGAGUGAA GAUGG GGUUG GUGGUG UGGC@LB@ |::|||| | ||||:|| ||| |:|:|||| ||:|| :|||: :||:|| |:||@LB@ UUUAUCC C UUUGUCU UAA CUUUACUU CUGCC UCAAU UACUAC AUCG@LB@3'-UUU...CCAAC C A G GU A AUUAUUUAUU U -5'@LB@ | |@LB@ 64 1@LB@@LB@@LB@Energy -16.34 kcal/mol@LB@Hybridization Energy -38.9165 kcal/mol@LB@Unfolding Energy - mRNA 16.2325 kcal/mol@LB@Unfolding Energy - sRNA 6.344 kcal/mol@LB@@LB@Position - mRNA 178 -- 244@LB@Position - sRNA 1 -- 63@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 16 |
0.0008012 |
0.1482 |
b2011 |
sbcB |
-16.25 |
0.003318 |
186 -- 217 |
24 -- 52 |
exodeoxyribonuclease I; exonuclease I |
|
_____________185______________________________218\n_____________|________________________________|\n5'-CCU...GAAAU_______UUAACCUAAU_______________GCAAC...CCA-3'\n______________AACGGAU__________GAUGAAUGACGGUAA\n______________|||:||:__________:||||||||||||||\n______________UUGUCUG__________UUACUUACUGCCAUU\n3'-UUU...CCCAU_______UAAGUCU__________________AUUUA...UCG-5'\n_____________|________________________________|\n_____________53_______________________________23\n |
211 -- 217 |
24 -- 30 |
-27.0341 kcal/mol |
4.49086 kcal/mol |
6.2974 kcal/mol |
185 218@LB@ | |@LB@5'-CCU...GAAAU UUAACCUAAU GCAAC...CCA-3'@LB@ AACGGAU GAUGAAUGACGGUAA@LB@ |||:||: :||||||||||||||@LB@ UUGUCUG UUACUUACUGCCAUU@LB@3'-UUU...CCCAU UAAGUCU AUUUA...UCG-5'@LB@ | |@LB@ 53 23@LB@@LB@@LB@Energy -16.25 kcal/mol@LB@Hybridization Energy -27.0341 kcal/mol@LB@Unfolding Energy - mRNA 4.49086 kcal/mol@LB@Unfolding Energy - sRNA 6.2974 kcal/mol@LB@@LB@Position - mRNA 186 -- 217@LB@Position - sRNA 24 -- 52@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 25 |
0.00149 |
0.1957 |
b4244 |
pyrI |
-16.22 |
0.003374 |
188 -- 229 |
11 -- 59 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________187_________________________________________________230\n_____________|___________________________________________________|\n5'-UUC...CUGUA__________________________CAC___A________UGC_______AGCUA...UCA-3'\n______________AGGGG_AAAUAGA________GAUGA___ACG_UAAUAAAU___AGGUUGA\n______________|||||_|||:|||________:||||___|||_||||||||___|:|||:|\n______________UCCCC_UUUGUCU________UUACU___UGC_AUUAUUUA___UUCAAUU\n3'-UUU...CUUUA_____A_______GUAAGUCU_____UAC___C________U_________ACUAC...UCG-5'\n_____________|___________________________________________________|\n_____________60__________________________________________________10\n |
223 -- 229 |
11 -- 17 |
-28.8643 kcal/mol |
6.31236 kcal/mol |
6.33314 kcal/mol |
187 230@LB@ | |@LB@5'-UUC...CUGUA CAC A UGC AGCUA...UCA-3'@LB@ AGGGG AAAUAGA GAUGA ACG UAAUAAAU AGGUUGA@LB@ ||||| |||:||| :|||| ||| |||||||| |:|||:|@LB@ UCCCC UUUGUCU UUACU UGC AUUAUUUA UUCAAUU@LB@3'-UUU...CUUUA A GUAAGUCU UAC C U ACUAC...UCG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -28.8643 kcal/mol@LB@Unfolding Energy - mRNA 6.31236 kcal/mol@LB@Unfolding Energy - sRNA 6.33314 kcal/mol@LB@@LB@Position - mRNA 188 -- 229@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 27 |
0.001735 |
0.211 |
b3052 |
hldE |
-15.91 |
0.004078 |
227 -- 261 |
1 -- 47 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________226______________________________________________262\n_____________|________________________________________________|\n5'-GCG...UUUGA____G_____________________________________UGAU__UGGAU...CGC-3'\n______________ACGU_CAG____GAGUGAUGGU_________GGUUGGUGAUG____GC\n______________||:|_|||____||:|||:|||_________:|||::|||||____||\n______________UGUA_GUC____CUUACUGCCA_________UCAAUUACUAC____CG\n3'-UUU...UUGUC____A___UUUA__________UUAUUUAUU___________UAU___-5'\n_____________|_______________________________________________|\n_____________48______________________________________________1\n |
249 -- 255 |
6 -- 12 |
-30.7414 kcal/mol |
8.50852 kcal/mol |
6.32011 kcal/mol |
226 262@LB@ | |@LB@5'-GCG...UUUGA G UGAU UGGAU...CGC-3'@LB@ ACGU CAG GAGUGAUGGU GGUUGGUGAUG GC@LB@ ||:| ||| ||:|||:||| :|||::||||| ||@LB@ UGUA GUC CUUACUGCCA UCAAUUACUAC CG@LB@3'-UUU...UUGUC A UUUA UUAUUUAUU UAU -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -30.7414 kcal/mol@LB@Unfolding Energy - mRNA 8.50852 kcal/mol@LB@Unfolding Energy - sRNA 6.32011 kcal/mol@LB@@LB@Position - mRNA 227 -- 261@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 6 -- 12@LB@ |
