| 99 |
0.01587 |
0.5059 |
b2155 |
cirA |
-12.92 |
0.022646 |
275 -- 290 |
1 -- 16 |
colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter |
|
_____________274______________291\n_____________|________________|\n5'-GGA...UUAGC___C____________GAAAC...UGG-3'\n______________GGU_GAUGAUGAUGGC\n______________:||_:||||||||:||\n______________UCA_UUACUACUAUCG\n3'-UUU...UUAUU___A____________-5'\n_____________|_______________|\n_____________17______________1\n |
284 -- 290 |
1 -- 7 |
-19.8516 kcal/mol |
6.87927 kcal/mol |
0.0492804 kcal/mol |
274 291@LB@ | |@LB@5'-GGA...UUAGC C GAAAC...UGG-3'@LB@ GGU GAUGAUGAUGGC@LB@ :|| :||||||||:||@LB@ UCA UUACUACUAUCG@LB@3'-UUU...UUAUU A -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -19.8516 kcal/mol@LB@Unfolding Energy - mRNA 6.87927 kcal/mol@LB@Unfolding Energy - sRNA 0.0492804 kcal/mol@LB@@LB@Position - mRNA 275 -- 290@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 138 |
0.02287 |
0.526 |
b0081 |
mraZ |
-12.90 |
0.022954 |
180 -- 193 |
52 -- 64 |
RsmH methytransferase inhibitor |
|
_____________179____________194\n_____________|______________|\n5'-GAU...AAGUG_____A________GGCUG...AAA-3'\n______________GGAAU_AGGGGUGA\n______________|:|||_||||||:|\n______________CUUUA_UCCCCAUU\n3'-UUU...GCCAA______________UGUCU...UCG-5'\n_____________|______________|\n_____________65_____________51\n |
187 -- 193 |
52 -- 58 |
-14.7021 kcal/mol |
1.72638 kcal/mol |
0.0778991 kcal/mol |
179 194@LB@ | |@LB@5'-GAU...AAGUG A GGCUG...AAA-3'@LB@ GGAAU AGGGGUGA@LB@ |:||| ||||||:|@LB@ CUUUA UCCCCAUU@LB@3'-UUU...GCCAA UGUCU...UCG-5'@LB@ | |@LB@ 65 51@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -14.7021 kcal/mol@LB@Unfolding Energy - mRNA 1.72638 kcal/mol@LB@Unfolding Energy - sRNA 0.0778991 kcal/mol@LB@@LB@Position - mRNA 180 -- 193@LB@Position - sRNA 52 -- 64@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 74 |
0.0107 |
0.4523 |
b3385 |
gph |
-12.85 |
0.023515 |
41 -- 77 |
8 -- 48 |
phosphoglycolate phosphatase |
|
_____________40____________________________________________78\n_____________|_____________________________________________|\n5'-ACU...GCUUU_______GACU__________________C_______________ACAAC...UGU-3'\n______________GACAUUC____AGAAGUG___GACGGUGG___GUGAAG___GUGA\n______________|||||||____||||:||___||||||::___:|:|||___:|||\n______________CUGUAAG____UCUUUAC___CUGCCAUU___UAUUUC___UACU\n3'-UUU...UUUGU__________________UUA________AUU______AAU____ACUAUCG-5'\n_____________|_____________________________________________|\n_____________49____________________________________________7\n |
60 -- 66 |
24 -- 30 |
-29.3756 kcal/mol |
10.2075 kcal/mol |
6.31567 kcal/mol |
40 78@LB@ | |@LB@5'-ACU...GCUUU GACU C ACAAC...UGU-3'@LB@ GACAUUC AGAAGUG GACGGUGG GUGAAG GUGA@LB@ ||||||| ||||:|| ||||||:: :|:||| :|||@LB@ CUGUAAG UCUUUAC CUGCCAUU UAUUUC UACU@LB@3'-UUU...UUUGU UUA AUU AAU ACUAUCG-5'@LB@ | |@LB@ 49 7@LB@@LB@@LB@Energy -12.85 kcal/mol@LB@Hybridization Energy -29.3756 kcal/mol@LB@Unfolding Energy - mRNA 10.2075 kcal/mol@LB@Unfolding Energy - sRNA 6.31567 kcal/mol@LB@@LB@Position - mRNA 41 -- 77@LB@Position - sRNA 8 -- 48@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 159 |
0.02583 |
0.526 |
b2572 |
rseA |
-12.83 |
0.023837 |
184 -- 236 |
1 -- 63 |
anti-sigma factor |
|
_____________183_____________________________________________________________237\n_____________|_______________________________________________________________|\n5'-UCC...AUACU_____A_____U________G__________CA__UUUCCGCU____________________GAAAC...GGG-3'\n______________GGAUA_GGGUA__UAGGCAU_CAGAAA_GAA__AC______________UUAAUGG__AUGGC\n______________::|||_|||||__:||:|||_||||||_|||__||______________||||||:__||:||\n______________UUUAU_CCCAU__GUCUGUA_GUCUUU_CUU__UG______________AAUUACU__UAUCG\n3'-UUU...CCAAC_____C_____UU_______A______A___AC__CCAUUAUUUAUUUC_______AC_____-5'\n_____________|______________________________________________________________|\n_____________64_____________________________________________________________1\n |
225 -- 231 |
8 -- 14 |
-31.1691 kcal/mol |
11.9981 kcal/mol |
6.344 kcal/mol |
183 237@LB@ | |@LB@5'-UCC...AUACU A U G CA UUUCCGCU GAAAC...GGG-3'@LB@ GGAUA GGGUA UAGGCAU CAGAAA GAA AC UUAAUGG AUGGC@LB@ ::||| ||||| :||:||| |||||| ||| || ||||||: ||:||@LB@ UUUAU CCCAU GUCUGUA GUCUUU CUU UG AAUUACU UAUCG@LB@3'-UUU...CCAAC C UU A A AC CCAUUAUUUAUUUC AC -5'@LB@ | |@LB@ 64 1@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -31.1691 kcal/mol@LB@Unfolding Energy - mRNA 11.9981 kcal/mol@LB@Unfolding Energy - sRNA 6.344 kcal/mol@LB@@LB@Position - mRNA 184 -- 236@LB@Position - sRNA 1 -- 63@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 131 |
0.02082 |
0.5217 |
b2038 |
rfbC |
-12.83 |
0.023839 |
249 -- 268 |
2 -- 18 |
dTDP-4-deoxyrhamnose-3 5-epimerase |
|
_____________248__________________269\n_____________|____________________|\n5'-GGG...AGCCA_____AUU____________AGGUU...CAG-3'\n______________AGAGU___UGGUGAUGAUAG\n______________|:|||___|::|||||||||\n______________UUUCA___AUUACUACUAUC\n3'-UUU...AUUUA____________________G-5'\n_____________|____________________|\n_____________19___________________1\n |
262 -- 268 |
2 -- 8 |
-17.1909 kcal/mol |
4.30321 kcal/mol |
0.0608678 kcal/mol |
248 269@LB@ | |@LB@5'-GGG...AGCCA AUU AGGUU...CAG-3'@LB@ AGAGU UGGUGAUGAUAG@LB@ |:||| |::|||||||||@LB@ UUUCA AUUACUACUAUC@LB@3'-UUU...AUUUA G-5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -17.1909 kcal/mol@LB@Unfolding Energy - mRNA 4.30321 kcal/mol@LB@Unfolding Energy - sRNA 0.0608678 kcal/mol@LB@@LB@Position - mRNA 249 -- 268@LB@Position - sRNA 2 -- 18@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 40 |
0.004127 |
0.3349 |
b1659 |
ydhB |
-12.78 |
0.024485 |
130 -- 177 |
1 -- 61 |
LysR family putative transcriptional regulator |
|
_____________129_______________________________________________________________178\n_____________|_________________________________________________________________|\n5'-CGA...AAAGU______A_____AU_____________________________UU_______________C____UUCAA...UCA-3'\n______________GUAGGG_GUGAA__UAG_UGUU_____GUGAA__ACGGUAAUA___________UGAUGA_UGGU\n______________:|||||_||:||__:||_::||_____:||||__|||||||||___________||||||_|:|:\n______________UAUCCC_CAUUU__GUC_GUAA_____UACUU__UGCCAUUAU___________ACUACU_AUCG\n3'-UUU...AACUU_________________U____GUCUU_____AC_________UUAUUUCAAUU___________-5'\n_____________|________________________________________________________________|\n_____________62_______________________________________________________________1\n |
158 -- 164 |
22 -- 28 |
-31.01 kcal/mol |
11.8895 kcal/mol |
6.344 kcal/mol |
129 178@LB@ | |@LB@5'-CGA...AAAGU A AU UU C UUCAA...UCA-3'@LB@ GUAGGG GUGAA UAG UGUU GUGAA ACGGUAAUA UGAUGA UGGU@LB@ :||||| ||:|| :|| ::|| :|||| ||||||||| |||||| |:|:@LB@ UAUCCC CAUUU GUC GUAA UACUU UGCCAUUAU ACUACU AUCG@LB@3'-UUU...AACUU U GUCUU AC UUAUUUCAAUU -5'@LB@ | |@LB@ 62 1@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -31.01 kcal/mol@LB@Unfolding Energy - mRNA 11.8895 kcal/mol@LB@Unfolding Energy - sRNA 6.344 kcal/mol@LB@@LB@Position - mRNA 130 -- 177@LB@Position - sRNA 1 -- 61@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 103 |
0.01627 |
0.5059 |
b3527 |
yhjJ |
-12.72 |
0.025178 |
191 -- 250 |
1 -- 59 |
putative periplasmic M16 family chaperone |
|
_____________190_____________________________________________________________________251\n_____________|_______________________________________________________________________|\n5'-CUC...UGAUC______UC___U___GGGCACAAAAA____ACUUUUAGCG____________________C__________CACUG...GGC-3'\n______________AGGGGU__ACA_GCA___________UUCG__________GGCGGU___________UUG_UGAUGAUGGC\n______________||||||__|||_:||___________|||:__________|:||||___________||:_|||||||:||\n______________UCCCCA__UGU_UGU___________AAGU__________CUGCCA___________AAU_ACUACUAUCG\n3'-UUU...CUUUA______UU___C__________________CUUUACUUA_______UUAUUUAUUUC___U__________-5'\n_____________|______________________________________________________________________|\n_____________60_____________________________________________________________________1\n |
244 -- 250 |
1 -- 7 |
-34.0873 kcal/mol |
15.0257 kcal/mol |
6.33764 kcal/mol |
190 251@LB@ | |@LB@5'-CUC...UGAUC UC U GGGCACAAAAA ACUUUUAGCG C CACUG...GGC-3'@LB@ AGGGGU ACA GCA UUCG GGCGGU UUG UGAUGAUGGC@LB@ |||||| ||| :|| |||: |:|||| ||: |||||||:||@LB@ UCCCCA UGU UGU AAGU CUGCCA AAU ACUACUAUCG@LB@3'-UUU...CUUUA UU C CUUUACUUA UUAUUUAUUUC U -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -12.72 kcal/mol@LB@Hybridization Energy -34.0873 kcal/mol@LB@Unfolding Energy - mRNA 15.0257 kcal/mol@LB@Unfolding Energy - sRNA 6.33764 kcal/mol@LB@@LB@Position - mRNA 191 -- 250@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 107 |
0.01649 |
0.5059 |
b0830 |
gsiB |
-12.67 |
0.025954 |
282 -- 298 |
1 -- 18 |
glutathione ABC transporter periplasmic binding protein |
|
_____________281________________299\n_____________|__________________|\n5'-GGC...CUGCC____AU____________GG-3'\n______________AAAG___GUGGUGGUGGC\n______________||||___:||:||:|:||\n______________UUUC___UACUACUAUCG\n3'-UUU...AUUUA____AAU___________-5'\n_____________|_________________|\n_____________19________________1\n |
292 -- 298 |
1 -- 7 |
-15.5562 kcal/mol |
2.82856 kcal/mol |
0.0611543 kcal/mol |
281 299@LB@ | |@LB@5'-GGC...CUGCC AU GG-3'@LB@ AAAG GUGGUGGUGGC@LB@ |||| :||:||:|:||@LB@ UUUC UACUACUAUCG@LB@3'-UUU...AUUUA AAU -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -12.67 kcal/mol@LB@Hybridization Energy -15.5562 kcal/mol@LB@Unfolding Energy - mRNA 2.82856 kcal/mol@LB@Unfolding Energy - sRNA 0.0611543 kcal/mol@LB@@LB@Position - mRNA 282 -- 298@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 96 |
0.01578 |
0.5059 |
b3283 |
yrdD |
-12.59 |
0.027007 |
10 -- 20 |
2 -- 12 |
ssDNA-binding protein function unknown |
|
_____________9___________21\n_____________|___________|\n5'-AAC...CGUGA___________AGCGA...UUG-3'\n______________AAUGGUGAUAG\n______________||||:||||||\n______________UUACUACUAUC\n3'-UUU...UUCAA___________G-5'\n_____________|___________|\n_____________13__________1\n |
14 -- 20 |
2 -- 8 |
-13.6612 kcal/mol |
1.03146 kcal/mol |
0.0386655 kcal/mol |
9 21@LB@ | |@LB@5'-AAC...CGUGA AGCGA...UUG-3'@LB@ AAUGGUGAUAG@LB@ ||||:||||||@LB@ UUACUACUAUC@LB@3'-UUU...UUCAA G-5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -13.6612 kcal/mol@LB@Unfolding Energy - mRNA 1.03146 kcal/mol@LB@Unfolding Energy - sRNA 0.0386655 kcal/mol@LB@@LB@Position - mRNA 10 -- 20@LB@Position - sRNA 2 -- 12@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 39 |
0.003905 |
0.3287 |
b3541 |
dppD |
-12.54 |
0.027771 |
124 -- 154 |
26 -- 56 |
dipeptide/heme ABC transporter ATPas |
|
_____________123_______________________________155\n_____________|_________________________________|\n5'-UUU...CUGAC_______U________ACCU_____________CUGCG...GCG-3'\n______________GGU__GC_GGCAUUUA____GAUGGGUGACGGU\n______________|||__:|_|:||||:|____:|||::|||||||\n______________CCA__UG_CUGUAAGU____UUACUUACUGCCA\n3'-UUU...UAUCC___UU__U________CU_______________UUAUU...UCG-5'\n_____________|_________________________________|\n_____________57________________________________25\n |
148 -- 154 |
26 -- 32 |
-28.6535 kcal/mol |
9.81942 kcal/mol |
6.29593 kcal/mol |
123 155@LB@ | |@LB@5'-UUU...CUGAC U ACCU CUGCG...GCG-3'@LB@ GGU GC GGCAUUUA GAUGGGUGACGGU@LB@ ||| :| |:||||:| :|||::|||||||@LB@ CCA UG CUGUAAGU UUACUUACUGCCA@LB@3'-UUU...UAUCC UU U CU UUAUU...UCG-5'@LB@ | |@LB@ 57 25@LB@@LB@@LB@Energy -12.54 kcal/mol@LB@Hybridization Energy -28.6535 kcal/mol@LB@Unfolding Energy - mRNA 9.81942 kcal/mol@LB@Unfolding Energy - sRNA 6.29593 kcal/mol@LB@@LB@Position - mRNA 124 -- 154@LB@Position - sRNA 26 -- 56@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 26 -- 32@LB@ |
