183 |
0.03203 |
0.5559 |
b4484 |
cpxP |
-9.38 |
0.135070 |
107 -- 120 |
71 -- 85 |
inhibitor of the cpx response; periplasmic adaptor protein |
|
_____________106_____________121\n_____________|_______________|\n5'-UAA...AUGAC_______________CACCC...GUG-3'\n______________UUUACGUUG_UUUUA\n______________||:||||||_:||||\n______________AAGUGCAAC_GAAAU\n3'-CGC...UUUUC_________C_____CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
109 -- 115 |
77 -- 83 |
-11.4265 kcal/mol |
1.48788 kcal/mol |
0.560731 kcal/mol |
106 121@LB@ | |@LB@5'-UAA...AUGAC CACCC...GUG-3'@LB@ UUUACGUUG UUUUA@LB@ ||:|||||| :||||@LB@ AAGUGCAAC GAAAU@LB@3'-CGC...UUUUC C CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -11.4265 kcal/mol@LB@Unfolding Energy - mRNA 1.48788 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 107 -- 120@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 77 -- 83@LB@ |
98 |
0.0165 |
0.5385 |
b0151 |
fhuC |
-12.15 |
0.044517 |
184 -- 202 |
66 -- 85 |
iron(3+)-hydroxamate import ABC transporter ATPase |
|
_____________183____________________203\n_____________|______________________|\n5'-CUG...CCCAU_____AA_______________GCAGG...CCU-3'\n______________UUCAC__GUUGGCU___GUUAU\n______________|||||__|||||||___|||||\n______________AAGUG__CAACCGA___CAAUA\n3'-CGC...UUUUC______________AAU_____AGCUC...AAG-5'\n_____________|______________________|\n_____________86_____________________65\n |
191 -- 197 |
74 -- 80 |
-16.912 kcal/mol |
4.1925 kcal/mol |
0.573112 kcal/mol |
183 203@LB@ | |@LB@5'-CUG...CCCAU AA GCAGG...CCU-3'@LB@ UUCAC GUUGGCU GUUAU@LB@ ||||| ||||||| |||||@LB@ AAGUG CAACCGA CAAUA@LB@3'-CGC...UUUUC AAU AGCUC...AAG-5'@LB@ | |@LB@ 86 65@LB@@LB@@LB@Energy -12.15 kcal/mol@LB@Hybridization Energy -16.912 kcal/mol@LB@Unfolding Energy - mRNA 4.1925 kcal/mol@LB@Unfolding Energy - sRNA 0.573112 kcal/mol@LB@@LB@Position - mRNA 184 -- 202@LB@Position - sRNA 66 -- 85@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 74 -- 80@LB@ |
65 |
0.01282 |
0.5385 |
b0589 |
fepG |
-12.08 |
0.045738 |
8 -- 17 |
74 -- 83 |
iron-enterobactin ABC transporter permease |
|
_____________7__________18\n_____________|__________|\n____5'-CAUAUGG__________GGUGG...CGC-3'\n______________CGCGUUGGCU\n______________|:||||||||\n______________GUGCAACCGA\n3'-CGC...UUCAA__________AAUCA...AAG-5'\n_____________|__________|\n_____________84_________73\n |
11 -- 17 |
74 -- 80 |
-17.1529 kcal/mol |
4.57841 kcal/mol |
0.494551 kcal/mol |
7 18@LB@ | |@LB@ 5'-CAUAUGG GGUGG...CGC-3'@LB@ CGCGUUGGCU@LB@ |:||||||||@LB@ GUGCAACCGA@LB@3'-CGC...UUCAA AAUCA...AAG-5'@LB@ | |@LB@ 84 73@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -17.1529 kcal/mol@LB@Unfolding Energy - mRNA 4.57841 kcal/mol@LB@Unfolding Energy - sRNA 0.494551 kcal/mol@LB@@LB@Position - mRNA 8 -- 17@LB@Position - sRNA 74 -- 83@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 74 -- 80@LB@ |
43 |
0.009109 |
0.5385 |
b2531 |
iscR |
-9.39 |
0.134324 |
275 -- 298 |
62 -- 87 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________274________________________299\n_____________|__________________________|\n5'-AUG...GGCCC___A__________GAUAUUUC____AC-3'\n______________GGU_C_CGUUGGCU_________CGA\n______________:||_|_||||||||_________|||\n______________UCA_G_GCAACCGA_________GCU\n3'-CGC...CGUUU___A_U________AAUCAAUAA___CAACU...AAG-5'\n_____________|__________________________|\n_____________88_________________________61\n |
281 -- 287 |
74 -- 80 |
-16.3089 kcal/mol |
5.20915 kcal/mol |
1.70771 kcal/mol |
274 299@LB@ | |@LB@5'-AUG...GGCCC A GAUAUUUC AC-3'@LB@ GGU C CGUUGGCU CGA@LB@ :|| | |||||||| |||@LB@ UCA G GCAACCGA GCU@LB@3'-CGC...CGUUU A U AAUCAAUAA CAACU...AAG-5'@LB@ | |@LB@ 88 61@LB@@LB@@LB@Energy -9.39 kcal/mol@LB@Hybridization Energy -16.3089 kcal/mol@LB@Unfolding Energy - mRNA 5.20915 kcal/mol@LB@Unfolding Energy - sRNA 1.70771 kcal/mol@LB@@LB@Position - mRNA 275 -- 298@LB@Position - sRNA 62 -- 87@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 74 -- 80@LB@ |
57 |
0.01133 |
0.5385 |
b0026 |
ileS |
-8.45 |
0.192830 |
289 -- 299 |
74 -- 83 |
isoleucyl-tRNA synthetase |
|
_____________288_________300\n_____________|___________|\n5'-AUG...GCUGG________A__G-3'\n______________CGCGUUGG_CU\n______________|:||||||_||\n______________GUGCAACC_GA\n3'-CGC...UUCAA___________AAUCA...AAG-5'\n_____________|___________|\n_____________84__________73\n |
290 -- 296 |
76 -- 82 |
-13.1796 kcal/mol |
4.23376 kcal/mol |
0.494551 kcal/mol |
288 300@LB@ | |@LB@5'-AUG...GCUGG A G-3'@LB@ CGCGUUGG CU@LB@ |:|||||| ||@LB@ GUGCAACC GA@LB@3'-CGC...UUCAA AAUCA...AAG-5'@LB@ | |@LB@ 84 73@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -13.1796 kcal/mol@LB@Unfolding Energy - mRNA 4.23376 kcal/mol@LB@Unfolding Energy - sRNA 0.494551 kcal/mol@LB@@LB@Position - mRNA 289 -- 299@LB@Position - sRNA 74 -- 83@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 76 -- 82@LB@ |
154 |
0.02609 |
0.5541 |
b4195 |
ulaC |
-15.85 |
0.009707 |
6 -- 31 |
56 -- 80 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________5__________________________32\n_____________|__________________________|\n______5'-GCGCG______GAGUACAAAAG_________UGGCG...UGG-3'\n______________GUUGGC___________CGAGUUGAG\n______________||||||___________|||||||||\n______________CAACCG___________GCUCAACUC\n3'-CGC...AAGUG______AAAUCAAUAA__________UUUGA...AAG-5'\n_____________|__________________________|\n_____________81_________________________55\n |
25 -- 31 |
56 -- 62 |
-23.4839 kcal/mol |
5.91355 kcal/mol |
1.71557 kcal/mol |
5 32@LB@ | |@LB@ 5'-GCGCG GAGUACAAAAG UGGCG...UGG-3'@LB@ GUUGGC CGAGUUGAG@LB@ |||||| |||||||||@LB@ CAACCG GCUCAACUC@LB@3'-CGC...AAGUG AAAUCAAUAA UUUGA...AAG-5'@LB@ | |@LB@ 81 55@LB@@LB@@LB@Energy -15.85 kcal/mol@LB@Hybridization Energy -23.4839 kcal/mol@LB@Unfolding Energy - mRNA 5.91355 kcal/mol@LB@Unfolding Energy - sRNA 1.71557 kcal/mol@LB@@LB@Position - mRNA 6 -- 31@LB@Position - sRNA 56 -- 80@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 56 -- 62@LB@ |
134 |
0.0229 |
0.5385 |
b3729 |
glmS |
-8.05 |
0.223933 |
255 -- 266 |
79 -- 90 |
L-glutamine:D-fructose-6-phosphate aminotransferase |
|
_____________254__________267\n_____________|____________|\n5'-CAG...UUCUU____________CGUCU...GUC-3'\n______________GAAGGUUUACGU\n______________:||:|||:||||\n______________UUUUCAAGUGCA\n3'-CGC...AGGCG____________ACCGA...AAG-5'\n_____________|____________|\n_____________91___________78\n |
260 -- 266 |
79 -- 85 |
-12.2414 kcal/mol |
3.68327 kcal/mol |
0.506924 kcal/mol |
254 267@LB@ | |@LB@5'-CAG...UUCUU CGUCU...GUC-3'@LB@ GAAGGUUUACGU@LB@ :||:|||:||||@LB@ UUUUCAAGUGCA@LB@3'-CGC...AGGCG ACCGA...AAG-5'@LB@ | |@LB@ 91 78@LB@@LB@@LB@Energy -8.05 kcal/mol@LB@Hybridization Energy -12.2414 kcal/mol@LB@Unfolding Energy - mRNA 3.68327 kcal/mol@LB@Unfolding Energy - sRNA 0.506924 kcal/mol@LB@@LB@Position - mRNA 255 -- 266@LB@Position - sRNA 79 -- 90@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 79 -- 85@LB@ |
167 |
0.02971 |
0.5559 |
b3062 |
ttdB |
-9.65 |
0.121251 |
224 -- 260 |
75 -- 106 |
L-tartrate dehydratase beta subunit |
|
_____________223___________________________________261\n_____________|_____________________________________|\n5'-GGA...ACCCC____AAAG___A____________UA_______C___GAUGU...GCG-3'\n______________GAUC____CUG_AGAUCUGCAAGA__UUCGCGU_GGC\n______________||||____|||_|||||:||||:|__|||:|||_|||\n______________CUAG____GAC_UCUAGGCGUUUU__AAGUGCA_CCG\n________3'-CGC___________C____________C________A___AAAUC...AAG-5'\n_____________|_____________________________________|\n_____________107___________________________________74\n |
250 -- 256 |
79 -- 85 |
-36.8095 kcal/mol |
15.2774 kcal/mol |
11.8787 kcal/mol |
223 261@LB@ | |@LB@5'-GGA...ACCCC AAAG A UA C GAUGU...GCG-3'@LB@ GAUC CUG AGAUCUGCAAGA UUCGCGU GGC@LB@ |||| ||| |||||:||||:| |||:||| |||@LB@ CUAG GAC UCUAGGCGUUUU AAGUGCA CCG@LB@ 3'-CGC C C A AAAUC...AAG-5'@LB@ | |@LB@ 107 74@LB@@LB@@LB@Energy -9.65 kcal/mol@LB@Hybridization Energy -36.8095 kcal/mol@LB@Unfolding Energy - mRNA 15.2774 kcal/mol@LB@Unfolding Energy - sRNA 11.8787 kcal/mol@LB@@LB@Position - mRNA 224 -- 260@LB@Position - sRNA 75 -- 106@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 79 -- 85@LB@ |
99 |
0.01653 |
0.5385 |
b0004 |
thrC |
-7.16 |
0.308279 |
183 -- 210 |
49 -- 64 |
L-threonine synthase |
|
_____________182__________________________211\n_____________|____________________________|\n5'-CGC...GCGCA_____AC___AAAACUAAAU________ACAAU...ACG-3'\n______________CGAGU__UGG__________GAAACUCU\n______________|||||__||:__________||||||||\n______________GCUCA__ACU__________CUUUGAGA\n3'-CGC...AAUAA____________________________GCUUU...AAG-5'\n_____________|____________________________|\n_____________65___________________________48\n |
204 -- 210 |
49 -- 55 |
-14.0058 kcal/mol |
2.63666 kcal/mol |
4.20534 kcal/mol |
182 211@LB@ | |@LB@5'-CGC...GCGCA AC AAAACUAAAU ACAAU...ACG-3'@LB@ CGAGU UGG GAAACUCU@LB@ ||||| ||: ||||||||@LB@ GCUCA ACU CUUUGAGA@LB@3'-CGC...AAUAA GCUUU...AAG-5'@LB@ | |@LB@ 65 48@LB@@LB@@LB@Energy -7.16 kcal/mol@LB@Hybridization Energy -14.0058 kcal/mol@LB@Unfolding Energy - mRNA 2.63666 kcal/mol@LB@Unfolding Energy - sRNA 4.20534 kcal/mol@LB@@LB@Position - mRNA 183 -- 210@LB@Position - sRNA 49 -- 64@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 49 -- 55@LB@ |
48 |
0.009918 |
0.5385 |
b0641 |
lptE |
-9.88 |
0.110832 |
177 -- 184 |
74 -- 81 |
LPS assembly OM complex LptDE lipoprotein component |
|
_____________176______185\n_____________|________|\n5'-ACG...CUGGU________AAGCG...UGA-3'\n______________CGUUGGCU\n______________||||||||\n______________GCAACCGA\n3'-CGC...CAAGU________AAUCA...AAG-5'\n_____________|________|\n_____________82_______73\n |
178 -- 184 |
74 -- 80 |
-13.2047 kcal/mol |
2.99134 kcal/mol |
0.332056 kcal/mol |
176 185@LB@ | |@LB@5'-ACG...CUGGU AAGCG...UGA-3'@LB@ CGUUGGCU@LB@ ||||||||@LB@ GCAACCGA@LB@3'-CGC...CAAGU AAUCA...AAG-5'@LB@ | |@LB@ 82 73@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -13.2047 kcal/mol@LB@Unfolding Energy - mRNA 2.99134 kcal/mol@LB@Unfolding Energy - sRNA 0.332056 kcal/mol@LB@@LB@Position - mRNA 177 -- 184@LB@Position - sRNA 74 -- 81@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 74 -- 80@LB@ |