111 |
0.01894 |
0.5385 |
b2600 |
tyrA |
-7.88 |
0.238290 |
191 -- 206 |
74 -- 89 |
fused chorismate mutase T/prephenate dehydrogenase |
|
_____________190______________207\n_____________|________________|\n5'-UCG...CUUAA_________UA_____GCUGA...UGG-3'\n______________GAGGUUUAU__UGGUU\n______________:|:|||:|:__|||:|\n______________UUUCAAGUG__ACCGA\n3'-CGC...GGCGU_________CA_____AAUCA...AAG-5'\n_____________|________________|\n_____________90_______________73\n |
193 -- 199 |
81 -- 87 |
-12.4695 kcal/mol |
4.06959 kcal/mol |
0.517373 kcal/mol |
190 207@LB@ | |@LB@5'-UCG...CUUAA UA GCUGA...UGG-3'@LB@ GAGGUUUAU UGGUU@LB@ :|:|||:|: |||:|@LB@ UUUCAAGUG ACCGA@LB@3'-CGC...GGCGU CA AAUCA...AAG-5'@LB@ | |@LB@ 90 73@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -12.4695 kcal/mol@LB@Unfolding Energy - mRNA 4.06959 kcal/mol@LB@Unfolding Energy - sRNA 0.517373 kcal/mol@LB@@LB@Position - mRNA 191 -- 206@LB@Position - sRNA 74 -- 89@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 81 -- 87@LB@ |
88 |
0.01545 |
0.5385 |
b3009 |
yghB |
-9.13 |
0.148475 |
202 -- 216 |
61 -- 78 |
general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
_____________201________________217\n_____________|__________________|\n5'-UCU...GUCCA_______________A__AUAUC...UUG-3'\n______________UGGCU___GUUAUUC_AG\n______________|||||___|||||||_||\n______________ACCGA___CAAUAAG_UC\n3'-CGC...GUGCA_____AAU_______C__AACUC...AAG-5'\n_____________|__________________|\n_____________79_________________60\n |
207 -- 213 |
64 -- 70 |
-14.1767 kcal/mol |
4.24529 kcal/mol |
0.796888 kcal/mol |
201 217@LB@ | |@LB@5'-UCU...GUCCA A AUAUC...UUG-3'@LB@ UGGCU GUUAUUC AG@LB@ ||||| ||||||| ||@LB@ ACCGA CAAUAAG UC@LB@3'-CGC...GUGCA AAU C AACUC...AAG-5'@LB@ | |@LB@ 79 60@LB@@LB@@LB@Energy -9.13 kcal/mol@LB@Hybridization Energy -14.1767 kcal/mol@LB@Unfolding Energy - mRNA 4.24529 kcal/mol@LB@Unfolding Energy - sRNA 0.796888 kcal/mol@LB@@LB@Position - mRNA 202 -- 216@LB@Position - sRNA 61 -- 78@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 64 -- 70@LB@ |
162 |
0.02861 |
0.5559 |
b0564 |
appY |
-9.53 |
0.127084 |
148 -- 162 |
62 -- 79 |
global transcriptional activator; DLP12 prophage |
b1499 b3515 b4116 b0566 b3516 |
_____________147________________163\n_____________|__________________|\n5'-AAA...UUUAA__________________CUACU...UAA-3'\n______________UUGGUU___GUUAUUUGA\n______________||||:|___||||||:||\n______________AACCGA___CAAUAAGCU\n3'-CGC...AGUGC______AAU_________CAACU...AAG-5'\n_____________|__________________|\n_____________80_________________61\n |
156 -- 162 |
62 -- 68 |
-13.1987 kcal/mol |
2.92728 kcal/mol |
0.737706 kcal/mol |
147 163@LB@ | |@LB@5'-AAA...UUUAA CUACU...UAA-3'@LB@ UUGGUU GUUAUUUGA@LB@ ||||:| ||||||:||@LB@ AACCGA CAAUAAGCU@LB@3'-CGC...AGUGC AAU CAACU...AAG-5'@LB@ | |@LB@ 80 61@LB@@LB@@LB@Energy -9.53 kcal/mol@LB@Hybridization Energy -13.1987 kcal/mol@LB@Unfolding Energy - mRNA 2.92728 kcal/mol@LB@Unfolding Energy - sRNA 0.737706 kcal/mol@LB@@LB@Position - mRNA 148 -- 162@LB@Position - sRNA 62 -- 79@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 62 -- 68@LB@ |
104 |
0.0176 |
0.5385 |
b2788 |
gudX |
-9.05 |
0.153387 |
171 -- 179 |
57 -- 65 |
glucarate dehydratase-related protein substrate unknown |
|
_____________170_______180\n_____________|_________|\n5'-CGG...GCGUA_________AACCU...CAU-3'\n______________UCGAGUUGA\n______________|||||||||\n______________AGCUCAACU\n3'-CGC...CAAUA_________CUUUG...AAG-5'\n_____________|_________|\n_____________66________56\n |
173 -- 179 |
57 -- 63 |
-12.8916 kcal/mol |
2.7095 kcal/mol |
1.13183 kcal/mol |
170 180@LB@ | |@LB@5'-CGG...GCGUA AACCU...CAU-3'@LB@ UCGAGUUGA@LB@ |||||||||@LB@ AGCUCAACU@LB@3'-CGC...CAAUA CUUUG...AAG-5'@LB@ | |@LB@ 66 56@LB@@LB@@LB@Energy -9.05 kcal/mol@LB@Hybridization Energy -12.8916 kcal/mol@LB@Unfolding Energy - mRNA 2.7095 kcal/mol@LB@Unfolding Energy - sRNA 1.13183 kcal/mol@LB@@LB@Position - mRNA 171 -- 179@LB@Position - sRNA 57 -- 65@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 57 -- 63@LB@ |
97 |
0.01643 |
0.5385 |
b2704 |
srlB |
-9.20 |
0.144516 |
91 -- 103 |
75 -- 87 |
glucitol/sorbitol-specific enzyme IIA component of PTS |
|
_____________90____________104\n_____________|_____________|\n5'-GGC...GACAC_________C___GUCCC...CUG-3'\n______________GGUUCGCGU_GGU\n______________:||||:|||_||:\n______________UCAAGUGCA_CCG\n3'-CGC...CGUUU_________A___AAAUC...AAG-5'\n_____________|_____________|\n_____________88____________74\n |
93 -- 99 |
79 -- 85 |
-16.5171 kcal/mol |
6.8003 kcal/mol |
0.512669 kcal/mol |
90 104@LB@ | |@LB@5'-GGC...GACAC C GUCCC...CUG-3'@LB@ GGUUCGCGU GGU@LB@ :||||:||| ||:@LB@ UCAAGUGCA CCG@LB@3'-CGC...CGUUU A AAAUC...AAG-5'@LB@ | |@LB@ 88 74@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -16.5171 kcal/mol@LB@Unfolding Energy - mRNA 6.8003 kcal/mol@LB@Unfolding Energy - sRNA 0.512669 kcal/mol@LB@@LB@Position - mRNA 91 -- 103@LB@Position - sRNA 75 -- 87@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 79 -- 85@LB@ |
93 |
0.01594 |
0.5385 |
b3430 |
glgC |
-8.76 |
0.171477 |
231 -- 238 |
75 -- 82 |
glucose-1-phosphate adenylyltransferase |
|
_____________230______239\n_____________|________|\n5'-CAG...ACUUA________GCGCC...UGA-3'\n______________AUGUUGGC\n______________|:||||||\n______________UGCAACCG\n3'-CGC...UCAAG________AAAUC...AAG-5'\n_____________|________|\n_____________83_______74\n |
232 -- 238 |
75 -- 81 |
-11.9398 kcal/mol |
2.84031 kcal/mol |
0.339284 kcal/mol |
230 239@LB@ | |@LB@5'-CAG...ACUUA GCGCC...UGA-3'@LB@ AUGUUGGC@LB@ |:||||||@LB@ UGCAACCG@LB@3'-CGC...UCAAG AAAUC...AAG-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -8.76 kcal/mol@LB@Hybridization Energy -11.9398 kcal/mol@LB@Unfolding Energy - mRNA 2.84031 kcal/mol@LB@Unfolding Energy - sRNA 0.339284 kcal/mol@LB@@LB@Position - mRNA 231 -- 238@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 75 -- 81@LB@ |
184 |
0.03259 |
0.5559 |
b0811 |
glnH |
-9.61 |
0.123139 |
215 -- 230 |
74 -- 90 |
glutamine transporter subunit |
|
_____________214________________231\n_____________|__________________|\n5'-AUC...GUAUU_______U__________GCACU...CCG-3'\n______________AAAAGUU_CAC__UGGCU\n______________|||||||_|||__|||||\n______________UUUUCAA_GUG__ACCGA\n3'-CGC...AGGCG___________CA_____AAUCA...AAG-5'\n_____________|__________________|\n_____________91_________________73\n |
215 -- 221 |
84 -- 90 |
-14.2101 kcal/mol |
4.07847 kcal/mol |
0.517587 kcal/mol |
214 231@LB@ | |@LB@5'-AUC...GUAUU U GCACU...CCG-3'@LB@ AAAAGUU CAC UGGCU@LB@ ||||||| ||| |||||@LB@ UUUUCAA GUG ACCGA@LB@3'-CGC...AGGCG CA AAUCA...AAG-5'@LB@ | |@LB@ 91 73@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -14.2101 kcal/mol@LB@Unfolding Energy - mRNA 4.07847 kcal/mol@LB@Unfolding Energy - sRNA 0.517587 kcal/mol@LB@@LB@Position - mRNA 215 -- 230@LB@Position - sRNA 74 -- 90@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 84 -- 90@LB@ |
108 |
0.0187 |
0.5385 |
b1210 |
hemA |
-9.14 |
0.148366 |
174 -- 184 |
75 -- 84 |
glutamyl tRNA reductase |
|
_____________173_________185\n_____________|___________|\n5'-CCU...CCCUA__A________AUUAU...ACA-3'\n______________UC_ACGUUGGU\n______________||_|||||||:\n______________AG_UGCAACCG\n3'-CGC...UUUCA___________AAAUC...AAG-5'\n_____________|___________|\n_____________85__________74\n |
178 -- 184 |
75 -- 81 |
-12.935 kcal/mol |
3.29275 kcal/mol |
0.505918 kcal/mol |
173 185@LB@ | |@LB@5'-CCU...CCCUA A AUUAU...ACA-3'@LB@ UC ACGUUGGU@LB@ || |||||||:@LB@ AG UGCAACCG@LB@3'-CGC...UUUCA AAAUC...AAG-5'@LB@ | |@LB@ 85 74@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -12.935 kcal/mol@LB@Unfolding Energy - mRNA 3.29275 kcal/mol@LB@Unfolding Energy - sRNA 0.505918 kcal/mol@LB@@LB@Position - mRNA 174 -- 184@LB@Position - sRNA 75 -- 84@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 75 -- 81@LB@ |
6 |
0.001078 |
0.5385 |
b0849 |
grxA |
-11.19 |
0.065759 |
209 -- 232 |
58 -- 81 |
glutaredoxin 1 redox coenzyme for ribonucleotide reductase (RNR1a) |
|
_____________208______________________233\n_____________|________________________|\n5'-AGU...CAAAC____AU_______C__________CCCUU...AUC-3'\n______________CGUU__UUUUGGU_GUUCGGGUUG\n______________||||__:|||:||_:||||:||||\n______________GCAA__GAAAUCA_UAAGCUCAAC\n3'-CGC...CAAGU____CC_______A__________UCUUU...AAG-5'\n_____________|________________________|\n_____________82_______________________57\n |
226 -- 232 |
58 -- 64 |
-21.2762 kcal/mol |
8.79419 kcal/mol |
1.29619 kcal/mol |
208 233@LB@ | |@LB@5'-AGU...CAAAC AU C CCCUU...AUC-3'@LB@ CGUU UUUUGGU GUUCGGGUUG@LB@ |||| :|||:|| :||||:||||@LB@ GCAA GAAAUCA UAAGCUCAAC@LB@3'-CGC...CAAGU CC A UCUUU...AAG-5'@LB@ | |@LB@ 82 57@LB@@LB@@LB@Energy -11.19 kcal/mol@LB@Hybridization Energy -21.2762 kcal/mol@LB@Unfolding Energy - mRNA 8.79419 kcal/mol@LB@Unfolding Energy - sRNA 1.29619 kcal/mol@LB@@LB@Position - mRNA 209 -- 232@LB@Position - sRNA 58 -- 81@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 58 -- 64@LB@ |
152 |
0.02564 |
0.5485 |
b0887 |
cydD |
-10.22 |
0.096853 |
263 -- 271 |
74 -- 82 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________262_______272\n_____________|_________|\n5'-AUU...UCCCA_________GAAUA...UGA-3'\n______________ACGUUGGCU\n______________|||||||||\n______________UGCAACCGA\n3'-CGC...UCAAG_________AAUCA...AAG-5'\n_____________|_________|\n_____________83________73\n |
265 -- 271 |
74 -- 80 |
-15.056 kcal/mol |
4.4924 kcal/mol |
0.342466 kcal/mol |
262 272@LB@ | |@LB@5'-AUU...UCCCA GAAUA...UGA-3'@LB@ ACGUUGGCU@LB@ |||||||||@LB@ UGCAACCGA@LB@3'-CGC...UCAAG AAUCA...AAG-5'@LB@ | |@LB@ 83 73@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -15.056 kcal/mol@LB@Unfolding Energy - mRNA 4.4924 kcal/mol@LB@Unfolding Energy - sRNA 0.342466 kcal/mol@LB@@LB@Position - mRNA 263 -- 271@LB@Position - sRNA 74 -- 82@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 74 -- 80@LB@ |