41 |
0.00828 |
0.5385 |
b2246 |
rhmT |
-13.65 |
0.023999 |
257 -- 273 |
69 -- 86 |
putative L-rhamnonate transporter |
|
_____________256________________274\n_____________|__________________|\n5'-ACG...AUUCC____________GCU___AUGUG...CGA-3'\n______________GUUUAUGUUGGC____GU\n______________|||:|:||||||____||\n______________CAAGUGCAACCG____CA\n3'-CGC...GUUUU____________AAAU__AUAAG...AAG-5'\n_____________|__________________|\n_____________87_________________68\n |
262 -- 268 |
75 -- 81 |
-18.6828 kcal/mol |
4.45929 kcal/mol |
0.568509 kcal/mol |
256 274@LB@ | |@LB@5'-ACG...AUUCC GCU AUGUG...CGA-3'@LB@ GUUUAUGUUGGC GU@LB@ |||:|:|||||| ||@LB@ CAAGUGCAACCG CA@LB@3'-CGC...GUUUU AAAU AUAAG...AAG-5'@LB@ | |@LB@ 87 68@LB@@LB@@LB@Energy -13.65 kcal/mol@LB@Hybridization Energy -18.6828 kcal/mol@LB@Unfolding Energy - mRNA 4.45929 kcal/mol@LB@Unfolding Energy - sRNA 0.568509 kcal/mol@LB@@LB@Position - mRNA 257 -- 273@LB@Position - sRNA 69 -- 86@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 75 -- 81@LB@ |
195 |
0.03428 |
0.5559 |
b0434 |
yajG |
-10.30 |
0.093744 |
131 -- 149 |
66 -- 84 |
putative lipoprotein |
|
_____________130__________________150\n_____________|____________________|\n5'-UGG...UCCCC___C_______AAU______GAUGG...UGC-3'\n______________UCG_CGUUGGC____GUUAU\n______________||:_|||||||____|||||\n______________AGU_GCAACCG____CAAUA\n3'-CGC...UUUCA___________AAAU_____AGCUC...AAG-5'\n_____________|____________________|\n_____________85___________________65\n |
135 -- 141 |
75 -- 81 |
-17.0927 kcal/mol |
6.21917 kcal/mol |
0.5705 kcal/mol |
130 150@LB@ | |@LB@5'-UGG...UCCCC C AAU GAUGG...UGC-3'@LB@ UCG CGUUGGC GUUAU@LB@ ||: ||||||| |||||@LB@ AGU GCAACCG CAAUA@LB@3'-CGC...UUUCA AAAU AGCUC...AAG-5'@LB@ | |@LB@ 85 65@LB@@LB@@LB@Energy -10.30 kcal/mol@LB@Hybridization Energy -17.0927 kcal/mol@LB@Unfolding Energy - mRNA 6.21917 kcal/mol@LB@Unfolding Energy - sRNA 0.5705 kcal/mol@LB@@LB@Position - mRNA 131 -- 149@LB@Position - sRNA 66 -- 84@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 75 -- 81@LB@ |
171 |
0.03054 |
0.5559 |
b0045 |
yaaU |
-10.82 |
0.076059 |
142 -- 153 |
73 -- 84 |
putative MFS sugar transporter; membrane protein |
|
_____________141__________154\n_____________|____________|\n5'-AAG...ACGGC_G__________GAUAC...UAC-3'\n______________U_AUGUUGGUUU\n______________|_|:|||||:||\n______________A_UGCAACCGAA\n3'-CGC...UUUCA_G__________AUCAA...AAG-5'\n_____________|____________|\n_____________85___________72\n |
147 -- 153 |
73 -- 79 |
-12.9415 kcal/mol |
1.60777 kcal/mol |
0.508835 kcal/mol |
141 154@LB@ | |@LB@5'-AAG...ACGGC G GAUAC...UAC-3'@LB@ U AUGUUGGUUU@LB@ | |:|||||:||@LB@ A UGCAACCGAA@LB@3'-CGC...UUUCA G AUCAA...AAG-5'@LB@ | |@LB@ 85 72@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -12.9415 kcal/mol@LB@Unfolding Energy - mRNA 1.60777 kcal/mol@LB@Unfolding Energy - sRNA 0.508835 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 73 -- 84@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 73 -- 79@LB@ |
136 |
0.02309 |
0.5385 |
b3223 |
nanE |
-8.63 |
0.180292 |
34 -- 47 |
74 -- 86 |
putative N-acetylmannosamine-6-P epimerase |
|
_____________33_____________48\n_____________|______________|\n5'-AUC...CUCGC_____G________GCGCC...AAA-3'\n______________GUUCA_CGUUGGUU\n______________|||||_||||||:|\n______________CAAGU_GCAACCGA\n3'-CGC...GUUUU______________AAUCA...AAG-5'\n_____________|______________|\n_____________87_____________73\n |
41 -- 47 |
74 -- 80 |
-15.9355 kcal/mol |
6.79344 kcal/mol |
0.513318 kcal/mol |
33 48@LB@ | |@LB@5'-AUC...CUCGC G GCGCC...AAA-3'@LB@ GUUCA CGUUGGUU@LB@ ||||| ||||||:|@LB@ CAAGU GCAACCGA@LB@3'-CGC...GUUUU AAUCA...AAG-5'@LB@ | |@LB@ 87 73@LB@@LB@@LB@Energy -8.63 kcal/mol@LB@Hybridization Energy -15.9355 kcal/mol@LB@Unfolding Energy - mRNA 6.79344 kcal/mol@LB@Unfolding Energy - sRNA 0.513318 kcal/mol@LB@@LB@Position - mRNA 34 -- 47@LB@Position - sRNA 74 -- 86@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 74 -- 80@LB@ |
172 |
0.03064 |
0.5559 |
b1542 |
ydfI |
-13.08 |
0.030437 |
273 -- 290 |
69 -- 86 |
putative NAD-dependent D-mannonate oxidoreductase |
|
_____________272________________291\n_____________|__________________|\n5'-CUC...GAAUU______UUA_________GCAUU...ACC-3'\n______________GUUCAU___GGCUUUGGU\n______________|||||:___||||||:||\n______________CAAGUG___CCGAAAUCA\n3'-CGC...GUUUU______CAA_________AUAAG...AAG-5'\n_____________|__________________|\n_____________87_________________68\n |
284 -- 290 |
69 -- 75 |
-19.6529 kcal/mol |
6.00837 kcal/mol |
0.568509 kcal/mol |
272 291@LB@ | |@LB@5'-CUC...GAAUU UUA GCAUU...ACC-3'@LB@ GUUCAU GGCUUUGGU@LB@ |||||: ||||||:||@LB@ CAAGUG CCGAAAUCA@LB@3'-CGC...GUUUU CAA AUAAG...AAG-5'@LB@ | |@LB@ 87 68@LB@@LB@@LB@Energy -13.08 kcal/mol@LB@Hybridization Energy -19.6529 kcal/mol@LB@Unfolding Energy - mRNA 6.00837 kcal/mol@LB@Unfolding Energy - sRNA 0.568509 kcal/mol@LB@@LB@Position - mRNA 273 -- 290@LB@Position - sRNA 69 -- 86@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 69 -- 75@LB@ |
189 |
0.03342 |
0.5559 |
b2172 |
yeiQ |
-17.65 |
0.004645 |
282 -- 298 |
70 -- 86 |
putative NAD-dependent D-mannonate oxidoreductase |
|
_____________281_______________299\n_____________|_________________|\n5'-GAU...GUAUC______U__________AG-3'\n______________GUUCAU_UUGGCUUUGG\n______________|||||:_||||||||:|\n______________CAAGUG_AACCGAAAUC\n3'-CGC...GUUUU______C__________AAUAA...AAG-5'\n_____________|_________________|\n_____________87________________69\n |
292 -- 298 |
70 -- 76 |
-21.6632 kcal/mol |
3.44897 kcal/mol |
0.568254 kcal/mol |
281 299@LB@ | |@LB@5'-GAU...GUAUC U AG-3'@LB@ GUUCAU UUGGCUUUGG@LB@ |||||: ||||||||:|@LB@ CAAGUG AACCGAAAUC@LB@3'-CGC...GUUUU C AAUAA...AAG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -17.65 kcal/mol@LB@Hybridization Energy -21.6632 kcal/mol@LB@Unfolding Energy - mRNA 3.44897 kcal/mol@LB@Unfolding Energy - sRNA 0.568254 kcal/mol@LB@@LB@Position - mRNA 282 -- 298@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 70 -- 76@LB@ |
30 |
0.005373 |
0.5385 |
b1624 |
ydgJ |
-10.76 |
0.078067 |
229 -- 247 |
61 -- 79 |
putative oxidoreductase |
|
_____________228_________________248\n_____________|___________________|\n5'-GUA...GUUGA____G_A_______G____CAAAA...CGG-3'\n______________UUGG_U_UGGUUAU_CGAG\n______________||||_|_|:|||||_||||\n______________AACC_A_AUCAAUA_GCUC\n3'-CGC...AGUGC____G_A_______A____AACUC...AAG-5'\n_____________|___________________|\n_____________80__________________60\n |
236 -- 242 |
66 -- 72 |
-16.8363 kcal/mol |
5.27817 kcal/mol |
0.798019 kcal/mol |
228 248@LB@ | |@LB@5'-GUA...GUUGA G A G CAAAA...CGG-3'@LB@ UUGG U UGGUUAU CGAG@LB@ |||| | |:||||| ||||@LB@ AACC A AUCAAUA GCUC@LB@3'-CGC...AGUGC G A A AACUC...AAG-5'@LB@ | |@LB@ 80 60@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -16.8363 kcal/mol@LB@Unfolding Energy - mRNA 5.27817 kcal/mol@LB@Unfolding Energy - sRNA 0.798019 kcal/mol@LB@@LB@Position - mRNA 229 -- 247@LB@Position - sRNA 61 -- 79@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 66 -- 72@LB@ |
173 |
0.03066 |
0.5559 |
b2928 |
yggC |
-11.87 |
0.049837 |
290 -- 298 |
75 -- 83 |
putative PanK family P-loop kinase |
|
_____________289_______299\n_____________|_________|\n5'-GAA...CUGCA_________GG-3'\n______________CAUGUUGGC\n______________||:||||||\n______________GUGCAACCG\n3'-CGC...UUCAA_________AAAUC...AAG-5'\n_____________|_________|\n_____________84________74\n |
292 -- 298 |
75 -- 81 |
-14.124 kcal/mol |
1.76242 kcal/mol |
0.492259 kcal/mol |
289 299@LB@ | |@LB@5'-GAA...CUGCA GG-3'@LB@ CAUGUUGGC@LB@ ||:||||||@LB@ GUGCAACCG@LB@3'-CGC...UUCAA AAAUC...AAG-5'@LB@ | |@LB@ 84 74@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -14.124 kcal/mol@LB@Unfolding Energy - mRNA 1.76242 kcal/mol@LB@Unfolding Energy - sRNA 0.492259 kcal/mol@LB@@LB@Position - mRNA 290 -- 298@LB@Position - sRNA 75 -- 83@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 75 -- 81@LB@ |
82 |
0.01477 |
0.5385 |
b3527 |
yhjJ |
-9.01 |
0.155560 |
190 -- 221 |
62 -- 91 |
putative periplasmic M16 family chaperone |
|
_____________189_______________________________222\n_____________|_________________________________|\n5'-CUC...UUGAU___________AUGCAG___ACAAAA_______CUUUU...GGC-3'\n______________CAGGGGUUCAC______GGC_______AUUCGA\n______________||:::||||||______|||_______||||||\n______________GUUUUCAAGUG______CCG_______UAAGCU\n3'-CGC...UAGGC___________CAA______AAAUCAA______CAACU...AAG-5'\n_____________|_________________________________|\n_____________92________________________________61\n |
194 -- 200 |
81 -- 87 |
-19.9715 kcal/mol |
6.94165 kcal/mol |
4.01597 kcal/mol |
189 222@LB@ | |@LB@5'-CUC...UUGAU AUGCAG ACAAAA CUUUU...GGC-3'@LB@ CAGGGGUUCAC GGC AUUCGA@LB@ ||:::|||||| ||| ||||||@LB@ GUUUUCAAGUG CCG UAAGCU@LB@3'-CGC...UAGGC CAA AAAUCAA CAACU...AAG-5'@LB@ | |@LB@ 92 61@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -19.9715 kcal/mol@LB@Unfolding Energy - mRNA 6.94165 kcal/mol@LB@Unfolding Energy - sRNA 4.01597 kcal/mol@LB@@LB@Position - mRNA 190 -- 221@LB@Position - sRNA 62 -- 91@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 81 -- 87@LB@ |
68 |
0.013 |
0.5385 |
b2823 |
ppdC |
-12.74 |
0.034901 |
243 -- 262 |
69 -- 89 |
putative prepilin peptidase-dependent protein |
|
_____________242___________________263\n_____________|_____________________|\n5'-ACG...UGCCG_____A_________GA____GUUGA...UCC-3'\n______________GAGGU__AUGUUGGC__UGGU\n______________:|:||__|:||||||__|:||\n______________UUUCA__UGCAACCG__AUCA\n3'-CGC...GGCGU_____AG________AA____AUAAG...AAG-5'\n_____________|_____________________|\n_____________90____________________68\n |
250 -- 256 |
75 -- 81 |
-18.5568 kcal/mol |
5.24273 kcal/mol |
0.572143 kcal/mol |
242 263@LB@ | |@LB@5'-ACG...UGCCG A GA GUUGA...UCC-3'@LB@ GAGGU AUGUUGGC UGGU@LB@ :|:|| |:|||||| |:||@LB@ UUUCA UGCAACCG AUCA@LB@3'-CGC...GGCGU AG AA AUAAG...AAG-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -12.74 kcal/mol@LB@Hybridization Energy -18.5568 kcal/mol@LB@Unfolding Energy - mRNA 5.24273 kcal/mol@LB@Unfolding Energy - sRNA 0.572143 kcal/mol@LB@@LB@Position - mRNA 243 -- 262@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 75 -- 81@LB@ |