| 76 |
0.004539 |
0.1924 |
b1722 |
ydiY |
-10.86 |
0.008894 |
80 -- 126 |
13 -- 55 |
acid-inducible putative outer membrane protein |
|
_____________79_______________________________________________127\n_____________|________________________________________________|\n5'-UAA...AUACA__________UAUUC___C___UUUAU__________CUUU_______CGCUA...UGG-3'\n______________UUGC_UAAGU_____GCG_CUU_____AAUUCGUUAC____CCAGGGA\n______________||||_||||:_____||:_|||_____||||||||||____|||||:|\n______________AACG_AUUCG_____CGU_GAA_____UUAAGCAAUG____GGUCCUU\n3'-UUU...CUUUG____A_____UUCUU_______UUUU___________U__________UAGAC...CAA-5'\n_____________|________________________________________________|\n_____________56_______________________________________________12\n |
109 -- 115 |
21 -- 27 |
-32.5898 kcal/mol |
7.90727 kcal/mol |
13.8238 kcal/mol |
79 127@LB@ | |@LB@5'-UAA...AUACA UAUUC C UUUAU CUUU CGCUA...UGG-3'@LB@ UUGC UAAGU GCG CUU AAUUCGUUAC CCAGGGA@LB@ |||| ||||: ||: ||| |||||||||| |||||:|@LB@ AACG AUUCG CGU GAA UUAAGCAAUG GGUCCUU@LB@3'-UUU...CUUUG A UUCUU UUUU U UAGAC...CAA-5'@LB@ | |@LB@ 56 12@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -32.5898 kcal/mol@LB@Unfolding Energy - mRNA 7.90727 kcal/mol@LB@Unfolding Energy - sRNA 13.8238 kcal/mol@LB@@LB@Position - mRNA 80 -- 126@LB@Position - sRNA 13 -- 55@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 65 |
0.003382 |
0.1645 |
b1739 |
osmE |
-4.35 |
0.428849 |
173 -- 228 |
7 -- 58 |
osmotically-inducible lipoprotein |
|
_____________172______________________________________________________229\n_____________|________________________________________________________|\n5'-GAA...UAUCU___AC___GA___A_______A__GAAUAUGAACAAGAA____G______U_____GUGCA...AGC-3'\n______________AAC__GCU__UAA_CAAGAGG_CG_______________UAUG_CAGGAA_UCUGA\n______________|||__|||__|||_|||||:|_|:_______________||::_||||||_|||||\n______________UUG__CGA__AUU_GUUCUUC_GU_______________AUGU_GUCCUU_AGACU\n3'-UUU...CUACU___AA________C__________GAAUUUUUUAAGCA_____G______U_____ACACAA-5'\n_____________|________________________________________________________|\n_____________59_______________________________________________________6\n |
187 -- 193 |
40 -- 46 |
-28.7812 kcal/mol |
10.5809 kcal/mol |
13.8467 kcal/mol |
172 229@LB@ | |@LB@5'-GAA...UAUCU AC GA A A GAAUAUGAACAAGAA G U GUGCA...AGC-3'@LB@ AAC GCU UAA CAAGAGG CG UAUG CAGGAA UCUGA@LB@ ||| ||| ||| |||||:| |: ||:: |||||| |||||@LB@ UUG CGA AUU GUUCUUC GU AUGU GUCCUU AGACU@LB@3'-UUU...CUACU AA C GAAUUUUUUAAGCA G U ACACAA-5'@LB@ | |@LB@ 59 6@LB@@LB@@LB@Energy -4.35 kcal/mol@LB@Hybridization Energy -28.7812 kcal/mol@LB@Unfolding Energy - mRNA 10.5809 kcal/mol@LB@Unfolding Energy - sRNA 13.8467 kcal/mol@LB@@LB@Position - mRNA 173 -- 228@LB@Position - sRNA 7 -- 58@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 100 |
0.007523 |
0.2423 |
b1744 |
astE |
-9.81 |
0.018546 |
117 -- 135 |
36 -- 53 |
succinylglutamate desuccinylase |
|
_____________116_________________136\n_____________|___________________|\n5'-GGU...GCUGC__GAA______________GGAUG...UGC-3'\n______________GC___GGGCGGGAAGCACU\n______________||___::||::||||||||\n______________CG___UUCGUUCUUCGUGA\n3'-UUU...UUGAA__AA_______________AUUUU...CAA-5'\n_____________|___________________|\n_____________54__________________35\n |
129 -- 135 |
36 -- 42 |
-22.0517 kcal/mol |
6.14291 kcal/mol |
6.10238 kcal/mol |
116 136@LB@ | |@LB@5'-GGU...GCUGC GAA GGAUG...UGC-3'@LB@ GC GGGCGGGAAGCACU@LB@ || ::||::||||||||@LB@ CG UUCGUUCUUCGUGA@LB@3'-UUU...UUGAA AA AUUUU...CAA-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -9.81 kcal/mol@LB@Hybridization Energy -22.0517 kcal/mol@LB@Unfolding Energy - mRNA 6.14291 kcal/mol@LB@Unfolding Energy - sRNA 6.10238 kcal/mol@LB@@LB@Position - mRNA 117 -- 135@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 200 |
0.02417 |
0.3893 |
b1747 |
astA |
-6.36 |
0.159223 |
49 -- 56 |
39 -- 46 |
arginine succinyltransferase |
|
_____________48_______57\n_____________|________|\n5'-GGC...UCUCU________GGCGA...AAG-3'\n______________CAGGAAGC\n______________||:|||||\n______________GUUCUUCG\n3'-UUU...AAUUC________UGAAU...CAA-5'\n_____________|________|\n_____________47_______38\n |
50 -- 56 |
39 -- 45 |
-10.5455 kcal/mol |
1.56403 kcal/mol |
2.62555 kcal/mol |
48 57@LB@ | |@LB@5'-GGC...UCUCU GGCGA...AAG-3'@LB@ CAGGAAGC@LB@ ||:|||||@LB@ GUUCUUCG@LB@3'-UUU...AAUUC UGAAU...CAA-5'@LB@ | |@LB@ 47 38@LB@@LB@@LB@Energy -6.36 kcal/mol@LB@Hybridization Energy -10.5455 kcal/mol@LB@Unfolding Energy - mRNA 1.56403 kcal/mol@LB@Unfolding Energy - sRNA 2.62555 kcal/mol@LB@@LB@Position - mRNA 49 -- 56@LB@Position - sRNA 39 -- 46@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 168 |
0.01885 |
0.3614 |
b1792 |
yeaO |
-5.97 |
0.195997 |
133 -- 142 |
25 -- 34 |
DUF488 family protein |
|
_____________132________143\n_____________|__________|\n5'-UGU...AGACA__________CUAAU...CCG-3'\n______________AAGAAAUUCG\n______________||:|||||||\n______________UUUUUUAAGC\n3'-UUU...GUGAA__________AAUGU...CAA-5'\n_____________|__________|\n_____________35_________24\n |
136 -- 142 |
25 -- 31 |
-8.43117 kcal/mol |
1.28773 kcal/mol |
1.16883 kcal/mol |
132 143@LB@ | |@LB@5'-UGU...AGACA CUAAU...CCG-3'@LB@ AAGAAAUUCG@LB@ ||:|||||||@LB@ UUUUUUAAGC@LB@3'-UUU...GUGAA AAUGU...CAA-5'@LB@ | |@LB@ 35 24@LB@@LB@@LB@Energy -5.97 kcal/mol@LB@Hybridization Energy -8.43117 kcal/mol@LB@Unfolding Energy - mRNA 1.28773 kcal/mol@LB@Unfolding Energy - sRNA 1.16883 kcal/mol@LB@@LB@Position - mRNA 133 -- 142@LB@Position - sRNA 25 -- 34@LB@Position Seed - mRNA 136 -- 142@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 164 |
0.01824 |
0.3566 |
b1854 |
pykA |
-7.33 |
0.090768 |
1 -- 31 |
25 -- 60 |
pyruvate kinase II |
|
______________1___________________________________32\n______________|___________________________________|\n___________5'-_____GG__CA_____________________A___CGUUU...ACG-3'\n______________GAAGC__GU______AAGAAGCGCU_GAAGGA_UCG\n______________|||:|__|:______|||||||:||_:||::|_|||\n______________CUUUG__CG______UUCUUCGUGA_UUUUUU_AGC\n3'-UUU...CCCUA_____AA__AAUUCG__________A______A___AAUGU...CAA-5'\n_____________|____________________________________|\n_____________61___________________________________24\n |
15 -- 21 |
36 -- 42 |
-23.5606 kcal/mol |
9.95433 kcal/mol |
6.27609 kcal/mol |
1 32@LB@ | |@LB@ 5'- GG CA A CGUUU...ACG-3'@LB@ GAAGC GU AAGAAGCGCU GAAGGA UCG@LB@ |||:| |: |||||||:|| :||::| |||@LB@ CUUUG CG UUCUUCGUGA UUUUUU AGC@LB@3'-UUU...CCCUA AA AAUUCG A A AAUGU...CAA-5'@LB@ | |@LB@ 61 24@LB@@LB@@LB@Energy -7.33 kcal/mol@LB@Hybridization Energy -23.5606 kcal/mol@LB@Unfolding Energy - mRNA 9.95433 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 1 -- 31@LB@Position - sRNA 25 -- 60@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 72 |
0.003773 |
0.1688 |
b1860 |
ruvB |
-7.81 |
0.067658 |
103 -- 111 |
38 -- 46 |
ATP-dependent DNA helicase component of RuvABC resolvasome |
|
_____________102_______112\n_____________|_________|\n5'-ACG...AACCA_________AGCCG...GUC-3'\n______________CAAGAAGCA\n______________|||||||||\n______________GUUCUUCGU\n3'-UUU...AAUUC_________GAAUU...CAA-5'\n_____________|_________|\n_____________47________37\n |
105 -- 111 |
38 -- 44 |
-11.4188 kcal/mol |
0.978333 kcal/mol |
2.62609 kcal/mol |
102 112@LB@ | |@LB@5'-ACG...AACCA AGCCG...GUC-3'@LB@ CAAGAAGCA@LB@ |||||||||@LB@ GUUCUUCGU@LB@3'-UUU...AAUUC GAAUU...CAA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -11.4188 kcal/mol@LB@Unfolding Energy - mRNA 0.978333 kcal/mol@LB@Unfolding Energy - sRNA 2.62609 kcal/mol@LB@@LB@Position - mRNA 103 -- 111@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 122 |
0.01076 |
0.2828 |
b1908 |
yecA |
-7.65 |
0.074805 |
79 -- 96 |
18 -- 40 |
UPF0149 family protein |
|
_____________78_______________________97\n_____________|________________________|\n5'-UAC...UGCCU__A_____________________CUCCU...UGG-3'\n______________GC_ACUUG______UCGUUACACC\n______________||_||||:______||||||||||\n______________CG_UGAAU______AGCAAUGUGG\n3'-UUU...UUCUU________UUUUUA__________UCCUU...CAA-5'\n_____________|________________________|\n_____________41_______________________17\n |
90 -- 96 |
18 -- 24 |
-19.1188 kcal/mol |
2.30438 kcal/mol |
9.1639 kcal/mol |
78 97@LB@ | |@LB@5'-UAC...UGCCU A CUCCU...UGG-3'@LB@ GC ACUUG UCGUUACACC@LB@ || ||||: ||||||||||@LB@ CG UGAAU AGCAAUGUGG@LB@3'-UUU...UUCUU UUUUUA UCCUU...CAA-5'@LB@ | |@LB@ 41 17@LB@@LB@@LB@Energy -7.65 kcal/mol@LB@Hybridization Energy -19.1188 kcal/mol@LB@Unfolding Energy - mRNA 2.30438 kcal/mol@LB@Unfolding Energy - sRNA 9.1639 kcal/mol@LB@@LB@Position - mRNA 79 -- 96@LB@Position - sRNA 18 -- 40@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 41 |
0.001644 |
0.1292 |
b1918 |
yecS |
-7.37 |
0.088723 |
192 -- 214 |
37 -- 60 |
ABC family putative inner membrane permease |
|
_____________191_______________________215\n_____________|_________________________|\n5'-GGC...CUCCG__________CAU_______A____ACAAC...GCU-3'\n______________GAAAC__GCU___GCAAGAA_GUAU\n______________|||||__|||___|||||||_|:|:\n______________CUUUG__CGA___CGUUCUU_CGUG\n3'-UUU...CCCUA_____AA___AUU____________AAUUU...CAA-5'\n_____________|_________________________|\n_____________61________________________36\n |
203 -- 209 |
41 -- 47 |
-18.5053 kcal/mol |
4.89056 kcal/mol |
6.24651 kcal/mol |
191 215@LB@ | |@LB@5'-GGC...CUCCG CAU A ACAAC...GCU-3'@LB@ GAAAC GCU GCAAGAA GUAU@LB@ ||||| ||| ||||||| |:|:@LB@ CUUUG CGA CGUUCUU CGUG@LB@3'-UUU...CCCUA AA AUU AAUUU...CAA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -7.37 kcal/mol@LB@Hybridization Energy -18.5053 kcal/mol@LB@Unfolding Energy - mRNA 4.89056 kcal/mol@LB@Unfolding Energy - sRNA 6.24651 kcal/mol@LB@@LB@Position - mRNA 192 -- 214@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 196 |
0.02353 |
0.3864 |
b1948 |
fliP |
-9.61 |
0.021211 |
171 -- 185 |
45 -- 59 |
flagellar biosynthesis protein |
|
_____________170_____________186\n_____________|_______________|\n5'-AUU...AUGAA_______________UAGCG...GCG-3'\n______________AAAUUUGCUUAAGCG\n______________|||:||||||||||:\n______________UUUGAACGAAUUCGU\n3'-UUU...CCUAC_______________UCUUC...CAA-5'\n_____________|_______________|\n_____________60______________44\n |
178 -- 184 |
46 -- 52 |
-18.3894 kcal/mol |
2.75936 kcal/mol |
6.02152 kcal/mol |
170 186@LB@ | |@LB@5'-AUU...AUGAA UAGCG...GCG-3'@LB@ AAAUUUGCUUAAGCG@LB@ |||:||||||||||:@LB@ UUUGAACGAAUUCGU@LB@3'-UUU...CCUAC UCUUC...CAA-5'@LB@ | |@LB@ 60 44@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -18.3894 kcal/mol@LB@Unfolding Energy - mRNA 2.75936 kcal/mol@LB@Unfolding Energy - sRNA 6.02152 kcal/mol@LB@@LB@Position - mRNA 171 -- 185@LB@Position - sRNA 45 -- 59@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 46 -- 52@LB@ |
