| 1 |
4.307e-10 |
1.387e-06 |
b2741 |
rpoS |
-17.23 |
0.000044 |
75 -- 104 |
10 -- 40 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________74______________________________105\n_____________|_______________________________|\n5'-CGG...CGCUU______U______________AG________CGUAA...AGG-3'\n______________GCAUUU__GAAAUUCGUUACA__GGGAAAUC\n______________|||:||__:||||||||||||__:|||||||\n______________CGUGAA__UUUUAAGCAAUGU__UCCUUUAG\n3'-UUU...UUCUU______UU_____________GG________ACUAC...CAA-5'\n_____________|_______________________________|\n_____________41______________________________9\n |
98 -- 104 |
10 -- 16 |
-32.4258 kcal/mol |
5.97429 kcal/mol |
9.22048 kcal/mol |
74 105@LB@ | |@LB@5'-CGG...CGCUU U AG CGUAA...AGG-3'@LB@ GCAUUU GAAAUUCGUUACA GGGAAAUC@LB@ |||:|| :|||||||||||| :|||||||@LB@ CGUGAA UUUUAAGCAAUGU UCCUUUAG@LB@3'-UUU...UUCUU UU GG ACUAC...CAA-5'@LB@ | |@LB@ 41 9@LB@@LB@@LB@Energy -17.23 kcal/mol@LB@Hybridization Energy -32.4258 kcal/mol@LB@Unfolding Energy - mRNA 5.97429 kcal/mol@LB@Unfolding Energy - sRNA 9.22048 kcal/mol@LB@@LB@Position - mRNA 75 -- 104@LB@Position - sRNA 10 -- 40@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 2 |
4.936e-07 |
0.0007949 |
b1237 |
hns |
-13.24 |
0.001473 |
195 -- 222 |
26 -- 57 |
global DNA-binding transcriptional dual regulator H-NS |
|
_____________194______________________________223\n_____________|________________________________|\n5'-CUC...AGAUU___ACAA_________________________UGAAC...UAG-3'\n______________ACU____UGAGC__GAAGCACUUAAA__AUUC\n______________|||____|:|||__||||||||||||__||||\n______________UGA____AUUCG__CUUCGUGAAUUU__UAAG\n3'-UUU...UACUU___ACGA_____UU____________UU____CAAUG...CAA-5'\n_____________|________________________________|\n_____________58_______________________________25\n |
212 -- 218 |
32 -- 38 |
-22.6274 kcal/mol |
3.10903 kcal/mol |
6.27605 kcal/mol |
194 223@LB@ | |@LB@5'-CUC...AGAUU ACAA UGAAC...UAG-3'@LB@ ACU UGAGC GAAGCACUUAAA AUUC@LB@ ||| |:||| |||||||||||| ||||@LB@ UGA AUUCG CUUCGUGAAUUU UAAG@LB@3'-UUU...UACUU ACGA UU UU CAAUG...CAA-5'@LB@ | |@LB@ 58 25@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -22.6274 kcal/mol@LB@Unfolding Energy - mRNA 3.10903 kcal/mol@LB@Unfolding Energy - sRNA 6.27605 kcal/mol@LB@@LB@Position - mRNA 195 -- 222@LB@Position - sRNA 26 -- 57@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 3 |
4.385e-06 |
0.004708 |
b3749 |
rbsA |
-11.98 |
0.003917 |
29 -- 86 |
17 -- 57 |
D-ribose ABC transporter ATPase |
|
_____________28_________________________________________________________87\n_____________|__________________________________________________________|\n5'-UAA...UGCUC___CAC________GCUGCAAAAACACCAG____A___CAUU________________CGCAU...UGG-3'\n______________ACU___CUUGAGCA________________GGAA_UAC____GAAAUUCGUUACACCA\n______________|||___|||:||||________________:|||_:||____:|||||||||||||||\n______________UGA___GAAUUCGU________________UCUU_GUG____UUUUAAGCAAUGUGGU\n3'-UUU...UACUU___AC_____________________________C___AAUU________________CCUUU...CAA-5'\n_____________|__________________________________________________________|\n_____________58_________________________________________________________16\n |
80 -- 86 |
17 -- 23 |
-33.7219 kcal/mol |
7.92362 kcal/mol |
13.8209 kcal/mol |
28 87@LB@ | |@LB@5'-UAA...UGCUC CAC GCUGCAAAAACACCAG A CAUU CGCAU...UGG-3'@LB@ ACU CUUGAGCA GGAA UAC GAAAUUCGUUACACCA@LB@ ||| |||:|||| :||| :|| :|||||||||||||||@LB@ UGA GAAUUCGU UCUU GUG UUUUAAGCAAUGUGGU@LB@3'-UUU...UACUU AC C AAUU CCUUU...CAA-5'@LB@ | |@LB@ 58 16@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -33.7219 kcal/mol@LB@Unfolding Energy - mRNA 7.92362 kcal/mol@LB@Unfolding Energy - sRNA 13.8209 kcal/mol@LB@@LB@Position - mRNA 29 -- 86@LB@Position - sRNA 17 -- 57@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 4 |
1.769e-05 |
0.01424 |
b2105 |
rcnR |
-7.88 |
0.065143 |
12 -- 26 |
36 -- 49 |
transcriptional repressor of rcnA |
|
_____________11______________27\n_____________|_______________|\n5'-UGA...GCACC________U______GGGGA...ACG-3'\n______________AAGUAAGA_GGCGCU\n______________|||:||||_:||:||\n______________UUCGUUCU_UCGUGA\n3'-UUU...ACGAA_______________AUUUU...CAA-5'\n_____________|_______________|\n_____________50______________35\n |
13 -- 19 |
42 -- 48 |
-15.6635 kcal/mol |
1.75127 kcal/mol |
6.03645 kcal/mol |
11 27@LB@ | |@LB@5'-UGA...GCACC U GGGGA...ACG-3'@LB@ AAGUAAGA GGCGCU@LB@ |||:|||| :||:||@LB@ UUCGUUCU UCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -15.6635 kcal/mol@LB@Unfolding Energy - mRNA 1.75127 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 12 -- 26@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 5 |
2.271e-05 |
0.01463 |
b0476 |
aes |
-9.47 |
0.023317 |
2 -- 45 |
10 -- 53 |
acetyl esterase |
|
_____________1______________________________________________46\n_____________|______________________________________________|\n__________5'-C_____CG_________AUGUUU_____UA_________________UCAUG...CAA-3'\n______________GUUUA___GGGAAGUA______GGAUU__CGUU_UACCGGGAAAUU\n______________|:|||___::||||:|______::|||__||||_:|||:||||||:\n______________CGAAU___UUCUUCGU______UUUAA__GCAA_GUGGUCCUUUAG\n3'-UUU...UUGAA_____UCG________GAAUUU___________U____________ACUAC...CAA-5'\n_____________|______________________________________________|\n_____________54_____________________________________________9\n |
39 -- 45 |
10 -- 16 |
-31.5647 kcal/mol |
8.26599 kcal/mol |
13.8307 kcal/mol |
1 46@LB@ | |@LB@ 5'-C CG AUGUUU UA UCAUG...CAA-3'@LB@ GUUUA GGGAAGUA GGAUU CGUU UACCGGGAAAUU@LB@ |:||| ::||||:| ::||| |||| :|||:||||||:@LB@ CGAAU UUCUUCGU UUUAA GCAA GUGGUCCUUUAG@LB@3'-UUU...UUGAA UCG GAAUUU U ACUAC...CAA-5'@LB@ | |@LB@ 54 9@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -31.5647 kcal/mol@LB@Unfolding Energy - mRNA 8.26599 kcal/mol@LB@Unfolding Energy - sRNA 13.8307 kcal/mol@LB@@LB@Position - mRNA 2 -- 45@LB@Position - sRNA 10 -- 53@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 6 |
4.032e-05 |
0.02042 |
b0889 |
lrp |
-10.51 |
0.011361 |
210 -- 221 |
37 -- 48 |
leucine-responsive global transcriptional regulator |
|
_____________209__________222\n_____________|____________|\n5'-GUG...UAGAU____________CCUGG...AGC-3'\n______________AGCAAGAAGCGC\n______________||||||||||:|\n______________UCGUUCUUCGUG\n3'-UUU...CGAAU____________AAUUU...CAA-5'\n_____________|____________|\n_____________49___________36\n |
215 -- 221 |
37 -- 43 |
-19.5953 kcal/mol |
3.24674 kcal/mol |
5.83483 kcal/mol |
209 222@LB@ | |@LB@5'-GUG...UAGAU CCUGG...AGC-3'@LB@ AGCAAGAAGCGC@LB@ ||||||||||:|@LB@ UCGUUCUUCGUG@LB@3'-UUU...CGAAU AAUUU...CAA-5'@LB@ | |@LB@ 49 36@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -19.5953 kcal/mol@LB@Unfolding Energy - mRNA 3.24674 kcal/mol@LB@Unfolding Energy - sRNA 5.83483 kcal/mol@LB@@LB@Position - mRNA 210 -- 221@LB@Position - sRNA 37 -- 48@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 7 |
4.438e-05 |
0.02042 |
b0794 |
ybhF |
-10.77 |
0.009494 |
150 -- 165 |
11 -- 26 |
putative ABC transporter ATPase |
|
_____________149______________166\n_____________|________________|\n5'-UAC...UGAUG________________GCCAG...GUU-3'\n______________CGUUACGCCAGGGAAU\n______________||||||:|||||:|||\n______________GCAAUGUGGUCCUUUA\n3'-UUU...UUUAA________________GACUA...CAA-5'\n_____________|________________|\n_____________27_______________10\n |
157 -- 163 |
13 -- 19 |
-25.1629 kcal/mol |
6.0475 kcal/mol |
8.34814 kcal/mol |
149 166@LB@ | |@LB@5'-UAC...UGAUG GCCAG...GUU-3'@LB@ CGUUACGCCAGGGAAU@LB@ ||||||:|||||:|||@LB@ GCAAUGUGGUCCUUUA@LB@3'-UUU...UUUAA GACUA...CAA-5'@LB@ | |@LB@ 27 10@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -25.1629 kcal/mol@LB@Unfolding Energy - mRNA 6.0475 kcal/mol@LB@Unfolding Energy - sRNA 8.34814 kcal/mol@LB@@LB@Position - mRNA 150 -- 165@LB@Position - sRNA 11 -- 26@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 8 |
5.642e-05 |
0.02272 |
b2282 |
nuoH |
-5.33 |
0.272754 |
189 -- 221 |
13 -- 44 |
NADH:ubiquinone oxidoreductase membrane subunit H |
|
_____________188________________________________222\n_____________|__________________________________|\n5'-CUC...CUCAA________AACAAU_____G_A__U_________CUGAU...GCU-3'\n______________GGAGGCAC______GAGUU_G_UA_CACC_GGAA\n______________:||:||||______:|:||_|_||_||||_||||\n______________UCUUCGUG______UUUAA_C_AU_GUGG_CCUU\n3'-UUU...UUCGU________AAUUU______G_A_______U____UAGAC...CAA-5'\n_____________|__________________________________|\n_____________45_________________________________12\n |
190 -- 196 |
37 -- 43 |
-24.1154 kcal/mol |
6.60325 kcal/mol |
12.1776 kcal/mol |
188 222@LB@ | |@LB@5'-CUC...CUCAA AACAAU G A U CUGAU...GCU-3'@LB@ GGAGGCAC GAGUU G UA CACC GGAA@LB@ :||:|||| :|:|| | || |||| ||||@LB@ UCUUCGUG UUUAA C AU GUGG CCUU@LB@3'-UUU...UUCGU AAUUU G A U UAGAC...CAA-5'@LB@ | |@LB@ 45 12@LB@@LB@@LB@Energy -5.33 kcal/mol@LB@Hybridization Energy -24.1154 kcal/mol@LB@Unfolding Energy - mRNA 6.60325 kcal/mol@LB@Unfolding Energy - sRNA 12.1776 kcal/mol@LB@@LB@Position - mRNA 189 -- 221@LB@Position - sRNA 13 -- 44@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 9 |
7.531e-05 |
0.02695 |
b0491 |
fetB |
-11.86 |
0.004271 |
187 -- 209 |
25 -- 47 |
iron export ABC transporter permease; peroxide resistance protein |
|
_____________186_____________________210\n_____________|_______________________|\n5'-GCC...GAAAU___________GCUAU___C___CAUAA...AGA-3'\n______________GCAGGAAGCAC_____GAA_UCG\n______________|||:|||||||_____:||_|||\n______________CGUUCUUCGUG_____UUU_AGC\n3'-UUU...GAAUU___________AAUUU___A___AAUGU...CAA-5'\n_____________|_______________________|\n_____________48______________________24\n |
191 -- 197 |
37 -- 43 |
-22.8314 kcal/mol |
4.71887 kcal/mol |
6.25056 kcal/mol |
186 210@LB@ | |@LB@5'-GCC...GAAAU GCUAU C CAUAA...AGA-3'@LB@ GCAGGAAGCAC GAA UCG@LB@ |||:||||||| :|| |||@LB@ CGUUCUUCGUG UUU AGC@LB@3'-UUU...GAAUU AAUUU A AAUGU...CAA-5'@LB@ | |@LB@ 48 24@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -22.8314 kcal/mol@LB@Unfolding Energy - mRNA 4.71887 kcal/mol@LB@Unfolding Energy - sRNA 6.25056 kcal/mol@LB@@LB@Position - mRNA 187 -- 209@LB@Position - sRNA 25 -- 47@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 10 |
0.0001005 |
0.03239 |
b1260 |
trpA |
-10.26 |
0.013526 |
184 -- 203 |
5 -- 22 |
tryptophan synthase alpha subunit |
|
_____________183__________________204\n_____________|____________________|\n5'-GCC...UGAAA____GAG_____________GAACG...CAU-3'\n______________GCAC___GGGAAAUCUGAUG\n______________:|||___:||||||||||||\n______________UGUG___UCCUUUAGACUAC\n3'-UUU...AGCAA____G_______________ACAA-5'\n_____________|____________________|\n_____________23___________________4\n |
192 -- 198 |
10 -- 16 |
-23.1901 kcal/mol |
5.35202 kcal/mol |
7.57357 kcal/mol |
183 204@LB@ | |@LB@5'-GCC...UGAAA GAG GAACG...CAU-3'@LB@ GCAC GGGAAAUCUGAUG@LB@ :||| :||||||||||||@LB@ UGUG UCCUUUAGACUAC@LB@3'-UUU...AGCAA G ACAA-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -10.26 kcal/mol@LB@Hybridization Energy -23.1901 kcal/mol@LB@Unfolding Energy - mRNA 5.35202 kcal/mol@LB@Unfolding Energy - sRNA 7.57357 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 10 -- 16@LB@ |
