| 12 |
0.0001753 |
0.04706 |
b3676 |
yidH |
-12.46 |
0.002725 |
279 -- 300 |
7 -- 26 |
DUF202 family inner membrane protein |
|
_____________278___________________300\n_____________|_____________________|\n5'-GCC...GGAUC___AC__________UU_____-3'\n______________CGU__UGCACUAGGA__UCUGG\n______________|||__|:|||:||||__||||:\n______________GCA__AUGUGGUCCU__AGACU\n3'-UUU...UUUAA_______________UU_____ACACAA-5'\n_____________|______________________|\n_____________27_____________________6\n |
286 -- 292 |
15 -- 21 |
-23.8048 kcal/mol |
2.98352 kcal/mol |
8.36616 kcal/mol |
278 300@LB@ | |@LB@5'-GCC...GGAUC AC UU -3'@LB@ CGU UGCACUAGGA UCUGG@LB@ ||| |:|||:|||| ||||:@LB@ GCA AUGUGGUCCU AGACU@LB@3'-UUU...UUUAA UU ACACAA-5'@LB@ | |@LB@ 27 6@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -23.8048 kcal/mol@LB@Unfolding Energy - mRNA 2.98352 kcal/mol@LB@Unfolding Energy - sRNA 8.36616 kcal/mol@LB@@LB@Position - mRNA 279 -- 300@LB@Position - sRNA 7 -- 26@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 11 |
0.0001294 |
0.03789 |
b3687 |
ibpA |
-8.25 |
0.051487 |
69 -- 81 |
26 -- 38 |
heat shock chaperone |
|
_____________68____________82\n_____________|_____________|\n5'-AAC...AUAAG_____________AUUUC...GCU-3'\n______________GCUUGAAAAGUUC\n______________:|||:||||:|||\n______________UGAAUUUUUUAAG\n3'-UUU...CUUCG_____________CAAUG...CAA-5'\n_____________|_____________|\n_____________39____________25\n |
75 -- 81 |
26 -- 32 |
-13.0918 kcal/mol |
3.40592 kcal/mol |
1.43364 kcal/mol |
68 82@LB@ | |@LB@5'-AAC...AUAAG AUUUC...GCU-3'@LB@ GCUUGAAAAGUUC@LB@ :|||:||||:|||@LB@ UGAAUUUUUUAAG@LB@3'-UUU...CUUCG CAAUG...CAA-5'@LB@ | |@LB@ 39 25@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -13.0918 kcal/mol@LB@Unfolding Energy - mRNA 3.40592 kcal/mol@LB@Unfolding Energy - sRNA 1.43364 kcal/mol@LB@@LB@Position - mRNA 69 -- 81@LB@Position - sRNA 26 -- 38@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 126 |
0.01159 |
0.2964 |
b3693 |
dgoK |
-8.44 |
0.045823 |
138 -- 160 |
34 -- 54 |
2-oxo-3-deoxygalactonate kinase |
|
_____________137_____________________161\n_____________|_______________________|\n5'-CAG...GGCGA___GGCA_______C________CCAUG...CAG-3'\n______________UGC____GAGCAGG_GGCGCUUA\n______________|||____:||||:|_:||:||||\n______________ACG____UUCGUUC_UCGUGAAU\n3'-UUU...UUUGA___AA_________U________UUUUU...CAA-5'\n_____________|_______________________|\n_____________55______________________33\n |
154 -- 160 |
34 -- 40 |
-23.026 kcal/mol |
8.41527 kcal/mol |
6.17478 kcal/mol |
137 161@LB@ | |@LB@5'-CAG...GGCGA GGCA C CCAUG...CAG-3'@LB@ UGC GAGCAGG GGCGCUUA@LB@ ||| :||||:| :||:||||@LB@ ACG UUCGUUC UCGUGAAU@LB@3'-UUU...UUUGA AA U UUUUU...CAA-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -8.44 kcal/mol@LB@Hybridization Energy -23.026 kcal/mol@LB@Unfolding Energy - mRNA 8.41527 kcal/mol@LB@Unfolding Energy - sRNA 6.17478 kcal/mol@LB@@LB@Position - mRNA 138 -- 160@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 75 |
0.004391 |
0.1886 |
b3708 |
tnaA |
-6.02 |
0.191179 |
273 -- 300 |
28 -- 53 |
tryptophanase/L-cysteine desulfhydrase PLP-dependent |
|
_____________272_________________________300\n_____________|___________________________|\n5'-ACC...CUCGC_____UC__G________A___UU____-3'\n______________GCUUA__GU_AAGAGGCA_UUA__AAAU\n______________|||||__|:_||||:|||_|||__||||\n______________CGAAU__CG_UUCUUCGU_AAU__UUUA\n3'-UUU...UUGAA_____U____________G___UU____AGCAA...CAA-5'\n_____________|____________________________|\n_____________54___________________________27\n |
284 -- 290 |
38 -- 44 |
-17.9242 kcal/mol |
5.66853 kcal/mol |
6.23468 kcal/mol |
272 300@LB@ | |@LB@5'-ACC...CUCGC UC G A UU -3'@LB@ GCUUA GU AAGAGGCA UUA AAAU@LB@ ||||| |: ||||:||| ||| ||||@LB@ CGAAU CG UUCUUCGU AAU UUUA@LB@3'-UUU...UUGAA U G UU AGCAA...CAA-5'@LB@ | |@LB@ 54 27@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -17.9242 kcal/mol@LB@Unfolding Energy - mRNA 5.66853 kcal/mol@LB@Unfolding Energy - sRNA 6.23468 kcal/mol@LB@@LB@Position - mRNA 273 -- 300@LB@Position - sRNA 28 -- 53@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 150 |
0.01547 |
0.3321 |
b3736 |
atpF |
-5.86 |
0.208717 |
262 -- 272 |
37 -- 47 |
F0 sector of membrane-bound ATP synthase subunit b |
|
_____________261_________273\n_____________|___________|\n5'-AUU...GUUCU___U_______GUAUG...UCG-3'\n______________GCA_GAAGUAC\n______________|||_||||:||\n______________CGU_CUUCGUG\n3'-UUU...GAAUU___U_______AAUUU...CAA-5'\n_____________|___________|\n_____________48__________36\n |
266 -- 272 |
37 -- 43 |
-12.6044 kcal/mol |
1.50868 kcal/mol |
5.23944 kcal/mol |
261 273@LB@ | |@LB@5'-AUU...GUUCU U GUAUG...UCG-3'@LB@ GCA GAAGUAC@LB@ ||| ||||:||@LB@ CGU CUUCGUG@LB@3'-UUU...GAAUU U AAUUU...CAA-5'@LB@ | |@LB@ 48 36@LB@@LB@@LB@Energy -5.86 kcal/mol@LB@Hybridization Energy -12.6044 kcal/mol@LB@Unfolding Energy - mRNA 1.50868 kcal/mol@LB@Unfolding Energy - sRNA 5.23944 kcal/mol@LB@@LB@Position - mRNA 262 -- 272@LB@Position - sRNA 37 -- 47@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 3 |
4.385e-06 |
0.004708 |
b3749 |
rbsA |
-11.98 |
0.003917 |
29 -- 86 |
17 -- 57 |
D-ribose ABC transporter ATPase |
|
_____________28_________________________________________________________87\n_____________|__________________________________________________________|\n5'-UAA...UGCUC___CAC________GCUGCAAAAACACCAG____A___CAUU________________CGCAU...UGG-3'\n______________ACU___CUUGAGCA________________GGAA_UAC____GAAAUUCGUUACACCA\n______________|||___|||:||||________________:|||_:||____:|||||||||||||||\n______________UGA___GAAUUCGU________________UCUU_GUG____UUUUAAGCAAUGUGGU\n3'-UUU...UACUU___AC_____________________________C___AAUU________________CCUUU...CAA-5'\n_____________|__________________________________________________________|\n_____________58_________________________________________________________16\n |
80 -- 86 |
17 -- 23 |
-33.7219 kcal/mol |
7.92362 kcal/mol |
13.8209 kcal/mol |
28 87@LB@ | |@LB@5'-UAA...UGCUC CAC GCUGCAAAAACACCAG A CAUU CGCAU...UGG-3'@LB@ ACU CUUGAGCA GGAA UAC GAAAUUCGUUACACCA@LB@ ||| |||:|||| :||| :|| :|||||||||||||||@LB@ UGA GAAUUCGU UCUU GUG UUUUAAGCAAUGUGGU@LB@3'-UUU...UACUU AC C AAUU CCUUU...CAA-5'@LB@ | |@LB@ 58 16@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -33.7219 kcal/mol@LB@Unfolding Energy - mRNA 7.92362 kcal/mol@LB@Unfolding Energy - sRNA 13.8209 kcal/mol@LB@@LB@Position - mRNA 29 -- 86@LB@Position - sRNA 17 -- 57@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 139 |
0.01338 |
0.3093 |
b3765 |
yifB |
-8.91 |
0.033732 |
103 -- 139 |
26 -- 57 |
magnesium chelatase family protein and putative transcriptional regulator |
|
_____________102______________________________________140\n_____________|________________________________________|\n5'-AAA...ACUUC______ACAAA___A_____AUC__C______________ACGAA...CGA-3'\n______________ACUUGC_____UAA_CAGGA___AG_CACU___AAAAUUC\n______________||||||_____|||_||:||___||_||||___|||||||\n______________UGAACG_____AUU_GUUCU___UC_GUGA___UUUUAAG\n3'-UUU...UACUU______A_______C_______________AUU_______CAAUG...CAA-5'\n_____________|________________________________________|\n_____________58_______________________________________25\n |
133 -- 139 |
26 -- 32 |
-18.0428 kcal/mol |
2.85625 kcal/mol |
6.27605 kcal/mol |
102 140@LB@ | |@LB@5'-AAA...ACUUC ACAAA A AUC C ACGAA...CGA-3'@LB@ ACUUGC UAA CAGGA AG CACU AAAAUUC@LB@ |||||| ||| ||:|| || |||| |||||||@LB@ UGAACG AUU GUUCU UC GUGA UUUUAAG@LB@3'-UUU...UACUU A C AUU CAAUG...CAA-5'@LB@ | |@LB@ 58 25@LB@@LB@@LB@Energy -8.91 kcal/mol@LB@Hybridization Energy -18.0428 kcal/mol@LB@Unfolding Energy - mRNA 2.85625 kcal/mol@LB@Unfolding Energy - sRNA 6.27605 kcal/mol@LB@@LB@Position - mRNA 103 -- 139@LB@Position - sRNA 26 -- 57@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 188 |
0.02199 |
0.3768 |
b3774 |
ilvC |
-7.43 |
0.085257 |
172 -- 181 |
37 -- 46 |
ketol-acid reductoisomerase NAD(P)-binding |
|
_____________171________182\n_____________|__________|\n5'-AUG...AACAA__________AACAU...GCU-3'\n______________UAAGAAGCAC\n______________:|||||||||\n______________GUUCUUCGUG\n3'-UUU...AAUUC__________AAUUU...CAA-5'\n_____________|__________|\n_____________47_________36\n |
175 -- 181 |
37 -- 43 |
-13.663 kcal/mol |
1.01181 kcal/mol |
5.21654 kcal/mol |
171 182@LB@ | |@LB@5'-AUG...AACAA AACAU...GCU-3'@LB@ UAAGAAGCAC@LB@ :|||||||||@LB@ GUUCUUCGUG@LB@3'-UUU...AAUUC AAUUU...CAA-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -7.43 kcal/mol@LB@Hybridization Energy -13.663 kcal/mol@LB@Unfolding Energy - mRNA 1.01181 kcal/mol@LB@Unfolding Energy - sRNA 5.21654 kcal/mol@LB@@LB@Position - mRNA 172 -- 181@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 23 |
0.000685 |
0.09021 |
b3780 |
rhlB |
-7.99 |
0.060609 |
254 -- 278 |
29 -- 60 |
ATP-dependent RNA helicase |
|
_____________253______________________________279\n_____________|________________________________|\n5'-UCG...CAUCC____G_________________C_________AAAGG...CGC-3'\n______________GAAG_UUGU_______AGAAGC_CUUGAAAAA\n______________|||:_|||:_______||||||_|||:|||||\n______________CUUU_AACG_______UCUUCG_GAAUUUUUU\n3'-UUU...CCCUA____G____AAUUCGU______U_________AAGCA...CAA-5'\n_____________|________________________________|\n_____________61_______________________________28\n |
270 -- 276 |
31 -- 37 |
-19.7636 kcal/mol |
5.50064 kcal/mol |
6.27092 kcal/mol |
253 279@LB@ | |@LB@5'-UCG...CAUCC G C AAAGG...CGC-3'@LB@ GAAG UUGU AGAAGC CUUGAAAAA@LB@ |||: |||: |||||| |||:|||||@LB@ CUUU AACG UCUUCG GAAUUUUUU@LB@3'-UUU...CCCUA G AAUUCGU U AAGCA...CAA-5'@LB@ | |@LB@ 61 28@LB@@LB@@LB@Energy -7.99 kcal/mol@LB@Hybridization Energy -19.7636 kcal/mol@LB@Unfolding Energy - mRNA 5.50064 kcal/mol@LB@Unfolding Energy - sRNA 6.27092 kcal/mol@LB@@LB@Position - mRNA 254 -- 278@LB@Position - sRNA 29 -- 60@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 135 |
0.01294 |
0.3087 |
b3785 |
wzzE |
-4.46 |
0.409883 |
275 -- 291 |
39 -- 56 |
Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
|
_____________274_________________292\n_____________|___________________|\n5'-GCU...CGUAC___________U_______UAUGG...UUA-3'\n______________CUUGU__GGGC_GGGAAGC\n______________||||:__::||_::|||||\n______________GAACG__UUCG_UUCUUCG\n3'-UUU...ACUUU_____AA____________UGAAU...CAA-5'\n_____________|___________________|\n_____________57__________________38\n |
285 -- 291 |
39 -- 45 |
-16.5835 kcal/mol |
6.01236 kcal/mol |
6.11167 kcal/mol |
274 292@LB@ | |@LB@5'-GCU...CGUAC U UAUGG...UUA-3'@LB@ CUUGU GGGC GGGAAGC@LB@ ||||: ::|| ::|||||@LB@ GAACG UUCG UUCUUCG@LB@3'-UUU...ACUUU AA UGAAU...CAA-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -4.46 kcal/mol@LB@Hybridization Energy -16.5835 kcal/mol@LB@Unfolding Energy - mRNA 6.01236 kcal/mol@LB@Unfolding Energy - sRNA 6.11167 kcal/mol@LB@@LB@Position - mRNA 275 -- 291@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 39 -- 45@LB@ |
