| 149 |
0.01515 |
0.3274 |
b4196 |
ulaD |
-9.50 |
0.022893 |
140 -- 153 |
36 -- 49 |
3-keto-L-gulonate 6-phosphate decarboxylase |
|
_____________139____________154\n_____________|______________|\n5'-CGA...GUACC______________GGAUC...AAG-3'\n______________GAGCAGGAAGUACU\n______________:||||:||||:|||\n______________UUCGUUCUUCGUGA\n3'-UUU...ACGAA______________AUUUU...CAA-5'\n_____________|______________|\n_____________50_____________35\n |
147 -- 153 |
36 -- 42 |
-21.0071 kcal/mol |
5.47534 kcal/mol |
6.03645 kcal/mol |
139 154@LB@ | |@LB@5'-CGA...GUACC GGAUC...AAG-3'@LB@ GAGCAGGAAGUACU@LB@ :||||:||||:|||@LB@ UUCGUUCUUCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -21.0071 kcal/mol@LB@Unfolding Energy - mRNA 5.47534 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 140 -- 153@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 183 |
0.02165 |
0.3768 |
b4201 |
priB |
-4.41 |
0.419305 |
289 -- 298 |
45 -- 54 |
primosomal protein N |
|
_____________288________299\n_____________|__________|\n5'-AGG...GUUCG__________UC-3'\n______________UGCUUGAGCA\n______________|||||:||||\n______________ACGAAUUCGU\n3'-UUU...UUUGA__________UCUUC...CAA-5'\n_____________|__________|\n_____________55_________44\n |
290 -- 296 |
47 -- 53 |
-14.7774 kcal/mol |
4.46723 kcal/mol |
5.90361 kcal/mol |
288 299@LB@ | |@LB@5'-AGG...GUUCG UC-3'@LB@ UGCUUGAGCA@LB@ |||||:||||@LB@ ACGAAUUCGU@LB@3'-UUU...UUUGA UCUUC...CAA-5'@LB@ | |@LB@ 55 44@LB@@LB@@LB@Energy -4.41 kcal/mol@LB@Hybridization Energy -14.7774 kcal/mol@LB@Unfolding Energy - mRNA 4.46723 kcal/mol@LB@Unfolding Energy - sRNA 5.90361 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 45 -- 54@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 102 |
0.008217 |
0.2595 |
b4220 |
tamA |
-7.38 |
0.088103 |
40 -- 47 |
39 -- 46 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________39_______48\n_____________|________|\n5'-CGC...UGUAA________GUAUU...GAC-3'\n______________CAAGAGGC\n______________|||||:||\n______________GUUCUUCG\n3'-UUU...AAUUC________UGAAU...CAA-5'\n_____________|________|\n_____________47_______38\n |
41 -- 47 |
39 -- 45 |
-10.989 kcal/mol |
0.983473 kcal/mol |
2.62555 kcal/mol |
39 48@LB@ | |@LB@5'-CGC...UGUAA GUAUU...GAC-3'@LB@ CAAGAGGC@LB@ |||||:||@LB@ GUUCUUCG@LB@3'-UUU...AAUUC UGAAU...CAA-5'@LB@ | |@LB@ 47 38@LB@@LB@@LB@Energy -7.38 kcal/mol@LB@Hybridization Energy -10.989 kcal/mol@LB@Unfolding Energy - mRNA 0.983473 kcal/mol@LB@Unfolding Energy - sRNA 2.62555 kcal/mol@LB@@LB@Position - mRNA 40 -- 47@LB@Position - sRNA 39 -- 46@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 178 |
0.02074 |
0.3753 |
b4324 |
uxuR |
-9.92 |
0.017203 |
196 -- 210 |
8 -- 22 |
fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor |
|
_____________195_____________211\n_____________|_______________|\n5'-UAC...ACACA______U________CCACC...UGC-3'\n______________ACACCA_GAAAUCUG\n______________||||||_||||||||\n______________UGUGGU_CUUUAGAC\n3'-UUU...AGCAA______C________UACACAA-5'\n_____________|_______________|\n_____________23______________7\n |
203 -- 209 |
9 -- 15 |
-19.4171 kcal/mol |
1.94047 kcal/mol |
7.56026 kcal/mol |
195 211@LB@ | |@LB@5'-UAC...ACACA U CCACC...UGC-3'@LB@ ACACCA GAAAUCUG@LB@ |||||| ||||||||@LB@ UGUGGU CUUUAGAC@LB@3'-UUU...AGCAA C UACACAA-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -19.4171 kcal/mol@LB@Unfolding Energy - mRNA 1.94047 kcal/mol@LB@Unfolding Energy - sRNA 7.56026 kcal/mol@LB@@LB@Position - mRNA 196 -- 210@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 99 |
0.007347 |
0.239 |
b4348 |
hsdS |
-4.18 |
0.460078 |
133 -- 139 |
70 -- 76 |
specificity determinant for hsdM and hsdR |
|
_____________132_____140\n_____________|_______|\n5'-CUG...GUGAA_______CGAGC...UAA-3'\n______________CUGGGGG\n______________|||:|||\n______________GACUCCC\n3'-UUU...GCUGG_______CCAGC...CAA-5'\n_____________|_______|\n_____________77______69\n |
133 -- 139 |
70 -- 76 |
-10.3039 kcal/mol |
2.51492 kcal/mol |
3.60488 kcal/mol |
132 140@LB@ | |@LB@5'-CUG...GUGAA CGAGC...UAA-3'@LB@ CUGGGGG@LB@ |||:|||@LB@ GACUCCC@LB@3'-UUU...GCUGG CCAGC...CAA-5'@LB@ | |@LB@ 77 69@LB@@LB@@LB@Energy -4.18 kcal/mol@LB@Hybridization Energy -10.3039 kcal/mol@LB@Unfolding Energy - mRNA 2.51492 kcal/mol@LB@Unfolding Energy - sRNA 3.60488 kcal/mol@LB@@LB@Position - mRNA 133 -- 139@LB@Position - sRNA 70 -- 76@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 184 |
0.02168 |
0.3768 |
b4380 |
yjjI |
-6.70 |
0.131310 |
12 -- 49 |
9 -- 40 |
DUF3029 family protein putative glycine radical enzyme |
|
_____________11________________________________________50\n_____________|_________________________________________|\n5'-ACA...ACUCC___ACACAC_______A_____AUCACAAUUA_________ACUUA...UGG-3'\n______________GCA_________UUCG_UACAC__________AGGAAAUCU\n______________|||_________||||_|||||__________|||||||||\n______________CGU_________AAGC_AUGUG__________UCCUUUAGA\n3'-UUU...UUCUU___GAAUUUUUU____A_____G__________________CUACACAA-5'\n_____________|_________________________________________|\n_____________41________________________________________8\n |
43 -- 49 |
9 -- 15 |
-18.7623 kcal/mol |
2.84333 kcal/mol |
9.22063 kcal/mol |
11 50@LB@ | |@LB@5'-ACA...ACUCC ACACAC A AUCACAAUUA ACUUA...UGG-3'@LB@ GCA UUCG UACAC AGGAAAUCU@LB@ ||| |||| ||||| |||||||||@LB@ CGU AAGC AUGUG UCCUUUAGA@LB@3'-UUU...UUCUU GAAUUUUUU A G CUACACAA-5'@LB@ | |@LB@ 41 8@LB@@LB@@LB@Energy -6.70 kcal/mol@LB@Hybridization Energy -18.7623 kcal/mol@LB@Unfolding Energy - mRNA 2.84333 kcal/mol@LB@Unfolding Energy - sRNA 9.22063 kcal/mol@LB@@LB@Position - mRNA 12 -- 49@LB@Position - sRNA 9 -- 40@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 167 |
0.01879 |
0.3614 |
b4383 |
deoB |
-8.94 |
0.033088 |
90 -- 118 |
37 -- 59 |
phosphopentomutase |
|
_____________89____________________________119\n_____________|_____________________________|\n5'-AGG...CAAUU________CGAUA_____CC__A______ACCAA...AUA-3'\n______________AAACUUGC_____AAGCA__GG_AAGCAC\n______________||||||||_____|||||__:|_||||||\n______________UUUGAACG_____UUCGU__UC_UUCGUG\n3'-UUU...CCUAC________AA___________________AAUUU...CAA-5'\n_____________|_____________________________|\n_____________60____________________________36\n |
91 -- 97 |
52 -- 58 |
-21.3309 kcal/mol |
6.14475 kcal/mol |
6.24627 kcal/mol |
89 119@LB@ | |@LB@5'-AGG...CAAUU CGAUA CC A ACCAA...AUA-3'@LB@ AAACUUGC AAGCA GG AAGCAC@LB@ |||||||| ||||| :| ||||||@LB@ UUUGAACG UUCGU UC UUCGUG@LB@3'-UUU...CCUAC AA AAUUU...CAA-5'@LB@ | |@LB@ 60 36@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -21.3309 kcal/mol@LB@Unfolding Energy - mRNA 6.14475 kcal/mol@LB@Unfolding Energy - sRNA 6.24627 kcal/mol@LB@@LB@Position - mRNA 90 -- 118@LB@Position - sRNA 37 -- 59@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 71 |
0.00365 |
0.1656 |
b4478 |
dgoD |
-6.42 |
0.153775 |
171 -- 195 |
38 -- 57 |
D-galactonate dehydratase |
|
_____________170_______________________196\n_____________|_________________________|\n5'-AAA...GCAGC_______A____GUAUC________GUGCA...UGA-3'\n______________AUUUGUU_AGGC_____GAGAGGCA\n______________|:|||:|_|:||_____:|||:|||\n______________UGAACGA_UUCG_____UUCUUCGU\n3'-UUU...UACUU_______A_________________GAAUU...CAA-5'\n_____________|_________________________|\n_____________58________________________37\n |
189 -- 195 |
38 -- 44 |
-17.6382 kcal/mol |
5.02573 kcal/mol |
6.19395 kcal/mol |
170 196@LB@ | |@LB@5'-AAA...GCAGC A GUAUC GUGCA...UGA-3'@LB@ AUUUGUU AGGC GAGAGGCA@LB@ |:|||:| |:|| :|||:|||@LB@ UGAACGA UUCG UUCUUCGU@LB@3'-UUU...UACUU A GAAUU...CAA-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -6.42 kcal/mol@LB@Hybridization Energy -17.6382 kcal/mol@LB@Unfolding Energy - mRNA 5.02573 kcal/mol@LB@Unfolding Energy - sRNA 6.19395 kcal/mol@LB@@LB@Position - mRNA 171 -- 195@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 44 |
0.001875 |
0.1369 |
b4485 |
ytfR |
-11.10 |
0.007490 |
215 -- 227 |
10 -- 22 |
putative sugar ABC transporter ATPase |
|
_____________214___________228\n_____________|_____________|\n5'-CCU...GACCA_____________CUCCG...GCC-3'\n______________ACACCAGGAGAUC\n______________|||||||||:|||\n______________UGUGGUCCUUUAG\n3'-UUU...AGCAA_____________ACUAC...CAA-5'\n_____________|_____________|\n_____________23____________9\n |
221 -- 227 |
10 -- 16 |
-21.5971 kcal/mol |
2.94097 kcal/mol |
7.55838 kcal/mol |
214 228@LB@ | |@LB@5'-CCU...GACCA CUCCG...GCC-3'@LB@ ACACCAGGAGAUC@LB@ |||||||||:|||@LB@ UGUGGUCCUUUAG@LB@3'-UUU...AGCAA ACUAC...CAA-5'@LB@ | |@LB@ 23 9@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -21.5971 kcal/mol@LB@Unfolding Energy - mRNA 2.94097 kcal/mol@LB@Unfolding Energy - sRNA 7.55838 kcal/mol@LB@@LB@Position - mRNA 215 -- 227@LB@Position - sRNA 10 -- 22@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 160 |
0.01746 |
0.3504 |
b4542 |
yohO |
-11.65 |
0.004993 |
133 -- 150 |
23 -- 41 |
putative membrane protein |
|
_____________132_________________151\n_____________|___________________|\n5'-UCG...CACUC_________U_________AACAA...GUG-3'\n______________GGCAUUUAA__GAUUCGUU\n______________:|||:||||__:|||||||\n______________UCGUGAAUU__UUAAGCAA\n3'-UUU...GUUCU_________UU________UGUGG...CAA-5'\n_____________|___________________|\n_____________42__________________22\n |
144 -- 150 |
23 -- 29 |
-16.4387 kcal/mol |
3.13759 kcal/mol |
1.64896 kcal/mol |
132 151@LB@ | |@LB@5'-UCG...CACUC U AACAA...GUG-3'@LB@ GGCAUUUAA GAUUCGUU@LB@ :|||:|||| :|||||||@LB@ UCGUGAAUU UUAAGCAA@LB@3'-UUU...GUUCU UU UGUGG...CAA-5'@LB@ | |@LB@ 42 22@LB@@LB@@LB@Energy -11.65 kcal/mol@LB@Hybridization Energy -16.4387 kcal/mol@LB@Unfolding Energy - mRNA 3.13759 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 133 -- 150@LB@Position - sRNA 23 -- 41@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 23 -- 29@LB@ |
