| 1 |
4.307e-10 |
1.387e-06 |
b2741 |
rpoS |
-17.23 |
0.000044 |
75 -- 104 |
10 -- 40 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________74______________________________105\n_____________|_______________________________|\n5'-CGG...CGCUU______U______________AG________CGUAA...AGG-3'\n______________GCAUUU__GAAAUUCGUUACA__GGGAAAUC\n______________|||:||__:||||||||||||__:|||||||\n______________CGUGAA__UUUUAAGCAAUGU__UCCUUUAG\n3'-UUU...UUCUU______UU_____________GG________ACUAC...CAA-5'\n_____________|_______________________________|\n_____________41______________________________9\n |
98 -- 104 |
10 -- 16 |
-32.4258 kcal/mol |
5.97429 kcal/mol |
9.22048 kcal/mol |
74 105@LB@ | |@LB@5'-CGG...CGCUU U AG CGUAA...AGG-3'@LB@ GCAUUU GAAAUUCGUUACA GGGAAAUC@LB@ |||:|| :|||||||||||| :|||||||@LB@ CGUGAA UUUUAAGCAAUGU UCCUUUAG@LB@3'-UUU...UUCUU UU GG ACUAC...CAA-5'@LB@ | |@LB@ 41 9@LB@@LB@@LB@Energy -17.23 kcal/mol@LB@Hybridization Energy -32.4258 kcal/mol@LB@Unfolding Energy - mRNA 5.97429 kcal/mol@LB@Unfolding Energy - sRNA 9.22048 kcal/mol@LB@@LB@Position - mRNA 75 -- 104@LB@Position - sRNA 10 -- 40@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 113 |
0.009602 |
0.2693 |
b3237 |
argR |
-14.05 |
0.000763 |
205 -- 250 |
27 -- 60 |
l-arginine-responsive arginine metabolism regulon transcriptional regulator |
|
_____________204_____________________________________________251\n_____________|_______________________________________________|\n5'-ACA...UAUGC______CG____________AGAACUAGUUAA___________C___ACUUA...UGC-3'\n______________GAAGCU__GC_UAAGCAAGA____________AGCAUUUAAAG_AUU\n______________|||:||__||_|||||||||____________||||:|||||:_|||\n______________CUUUGA__CG_AUUCGUUCU____________UCGUGAAUUUU_UAA\n3'-UUU...CCCUA______A___A________________________________U___GCAAU...CAA-5'\n_____________|_______________________________________________|\n_____________61______________________________________________26\n |
238 -- 244 |
33 -- 39 |
-28.1986 kcal/mol |
7.87477 kcal/mol |
6.27096 kcal/mol |
204 251@LB@ | |@LB@5'-ACA...UAUGC CG AGAACUAGUUAA C ACUUA...UGC-3'@LB@ GAAGCU GC UAAGCAAGA AGCAUUUAAAG AUU@LB@ |||:|| || ||||||||| ||||:|||||: |||@LB@ CUUUGA CG AUUCGUUCU UCGUGAAUUUU UAA@LB@3'-UUU...CCCUA A A U GCAAU...CAA-5'@LB@ | |@LB@ 61 26@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -28.1986 kcal/mol@LB@Unfolding Energy - mRNA 7.87477 kcal/mol@LB@Unfolding Energy - sRNA 6.27096 kcal/mol@LB@@LB@Position - mRNA 205 -- 250@LB@Position - sRNA 27 -- 60@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 2 |
4.936e-07 |
0.0007949 |
b1237 |
hns |
-13.24 |
0.001473 |
195 -- 222 |
26 -- 57 |
global DNA-binding transcriptional dual regulator H-NS |
|
_____________194______________________________223\n_____________|________________________________|\n5'-CUC...AGAUU___ACAA_________________________UGAAC...UAG-3'\n______________ACU____UGAGC__GAAGCACUUAAA__AUUC\n______________|||____|:|||__||||||||||||__||||\n______________UGA____AUUCG__CUUCGUGAAUUU__UAAG\n3'-UUU...UACUU___ACGA_____UU____________UU____CAAUG...CAA-5'\n_____________|________________________________|\n_____________58_______________________________25\n |
212 -- 218 |
32 -- 38 |
-22.6274 kcal/mol |
3.10903 kcal/mol |
6.27605 kcal/mol |
194 223@LB@ | |@LB@5'-CUC...AGAUU ACAA UGAAC...UAG-3'@LB@ ACU UGAGC GAAGCACUUAAA AUUC@LB@ ||| |:||| |||||||||||| ||||@LB@ UGA AUUCG CUUCGUGAAUUU UAAG@LB@3'-UUU...UACUU ACGA UU UU CAAUG...CAA-5'@LB@ | |@LB@ 58 25@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -22.6274 kcal/mol@LB@Unfolding Energy - mRNA 3.10903 kcal/mol@LB@Unfolding Energy - sRNA 6.27605 kcal/mol@LB@@LB@Position - mRNA 195 -- 222@LB@Position - sRNA 26 -- 57@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 30 |
0.0008402 |
0.09021 |
b2792 |
yqcC |
-12.92 |
0.001907 |
10 -- 25 |
38 -- 53 |
DUF446 family protein |
|
_____________9________________26\n_____________|________________|\n5'-AUC...GGGUG__G_____________AUAGU...AAU-3'\n______________GU_UGAGCAGGAAGCA\n______________|:_|:||||:||||||\n______________CG_AUUCGUUCUUCGU\n3'-UUU...UUGAA__A_____________GAAUU...CAA-5'\n_____________|________________|\n_____________54_______________37\n |
19 -- 25 |
38 -- 44 |
-21.2799 kcal/mol |
2.27149 kcal/mol |
6.09301 kcal/mol |
9 26@LB@ | |@LB@5'-AUC...GGGUG G AUAGU...AAU-3'@LB@ GU UGAGCAGGAAGCA@LB@ |: |:||||:||||||@LB@ CG AUUCGUUCUUCGU@LB@3'-UUU...UUGAA A GAAUU...CAA-5'@LB@ | |@LB@ 54 37@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -21.2799 kcal/mol@LB@Unfolding Energy - mRNA 2.27149 kcal/mol@LB@Unfolding Energy - sRNA 6.09301 kcal/mol@LB@@LB@Position - mRNA 10 -- 25@LB@Position - sRNA 38 -- 53@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 110 |
0.009505 |
0.2693 |
b0632 |
dacA |
-12.82 |
0.002052 |
146 -- 175 |
26 -- 57 |
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) |
|
_____________145______________________________176\n_____________|________________________________|\n5'-CCU...AGUGC_______AU______________UUUU_____CAUCA...AUA-3'\n______________AUUUGCU__AGUAGG__GCACUU____AAUUC\n______________|:|||||__||:|:|__||||||____|||||\n______________UGAACGA__UCGUUC__CGUGAA____UUAAG\n3'-UUU...UACUU_______AU______UU______UUUU_____CAAUG...CAA-5'\n_____________|________________________________|\n_____________58_______________________________25\n |
146 -- 152 |
51 -- 57 |
-23.8315 kcal/mol |
4.73353 kcal/mol |
6.27605 kcal/mol |
145 176@LB@ | |@LB@5'-CCU...AGUGC AU UUUU CAUCA...AUA-3'@LB@ AUUUGCU AGUAGG GCACUU AAUUC@LB@ |:||||| ||:|:| |||||| |||||@LB@ UGAACGA UCGUUC CGUGAA UUAAG@LB@3'-UUU...UACUU AU UU UUUU CAAUG...CAA-5'@LB@ | |@LB@ 58 25@LB@@LB@@LB@Energy -12.82 kcal/mol@LB@Hybridization Energy -23.8315 kcal/mol@LB@Unfolding Energy - mRNA 4.73353 kcal/mol@LB@Unfolding Energy - sRNA 6.27605 kcal/mol@LB@@LB@Position - mRNA 146 -- 175@LB@Position - sRNA 26 -- 57@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 12 |
0.0001753 |
0.04706 |
b3676 |
yidH |
-12.46 |
0.002725 |
279 -- 300 |
7 -- 26 |
DUF202 family inner membrane protein |
|
_____________278___________________300\n_____________|_____________________|\n5'-GCC...GGAUC___AC__________UU_____-3'\n______________CGU__UGCACUAGGA__UCUGG\n______________|||__|:|||:||||__||||:\n______________GCA__AUGUGGUCCU__AGACU\n3'-UUU...UUUAA_______________UU_____ACACAA-5'\n_____________|______________________|\n_____________27_____________________6\n |
286 -- 292 |
15 -- 21 |
-23.8048 kcal/mol |
2.98352 kcal/mol |
8.36616 kcal/mol |
278 300@LB@ | |@LB@5'-GCC...GGAUC AC UU -3'@LB@ CGU UGCACUAGGA UCUGG@LB@ ||| |:|||:|||| ||||:@LB@ GCA AUGUGGUCCU AGACU@LB@3'-UUU...UUUAA UU ACACAA-5'@LB@ | |@LB@ 27 6@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -23.8048 kcal/mol@LB@Unfolding Energy - mRNA 2.98352 kcal/mol@LB@Unfolding Energy - sRNA 8.36616 kcal/mol@LB@@LB@Position - mRNA 279 -- 300@LB@Position - sRNA 7 -- 26@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 32 |
0.0009536 |
0.09599 |
b0637 |
rsfS |
-12.32 |
0.003012 |
197 -- 230 |
23 -- 59 |
ribosomal silencing factor |
|
_____________196___________________________________231\n_____________|_____________________________________|\n5'-AUU...GGGGA________A_______________CC____U______AUCGA...UCA-3'\n______________AAACUUGC__GGGUA__AAGCACU__AGGA_UUUGUU\n______________||||||||__::|:|__|||||||__|::|_||:|||\n______________UUUGAACG__UUCGU__UUCGUGA__UUUU_AAGCAA\n3'-UUU...CCUAC________AA_____UC_______AU____U______UGUGG...CAA-5'\n_____________|_____________________________________|\n_____________60____________________________________22\n |
211 -- 217 |
36 -- 42 |
-25.7611 kcal/mol |
7.16036 kcal/mol |
6.27609 kcal/mol |
196 231@LB@ | |@LB@5'-AUU...GGGGA A CC U AUCGA...UCA-3'@LB@ AAACUUGC GGGUA AAGCACU AGGA UUUGUU@LB@ |||||||| ::|:| ||||||| |::| ||:|||@LB@ UUUGAACG UUCGU UUCGUGA UUUU AAGCAA@LB@3'-UUU...CCUAC AA UC AU U UGUGG...CAA-5'@LB@ | |@LB@ 60 22@LB@@LB@@LB@Energy -12.32 kcal/mol@LB@Hybridization Energy -25.7611 kcal/mol@LB@Unfolding Energy - mRNA 7.16036 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 197 -- 230@LB@Position - sRNA 23 -- 59@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 3 |
4.385e-06 |
0.004708 |
b3749 |
rbsA |
-11.98 |
0.003917 |
29 -- 86 |
17 -- 57 |
D-ribose ABC transporter ATPase |
|
_____________28_________________________________________________________87\n_____________|__________________________________________________________|\n5'-UAA...UGCUC___CAC________GCUGCAAAAACACCAG____A___CAUU________________CGCAU...UGG-3'\n______________ACU___CUUGAGCA________________GGAA_UAC____GAAAUUCGUUACACCA\n______________|||___|||:||||________________:|||_:||____:|||||||||||||||\n______________UGA___GAAUUCGU________________UCUU_GUG____UUUUAAGCAAUGUGGU\n3'-UUU...UACUU___AC_____________________________C___AAUU________________CCUUU...CAA-5'\n_____________|__________________________________________________________|\n_____________58_________________________________________________________16\n |
80 -- 86 |
17 -- 23 |
-33.7219 kcal/mol |
7.92362 kcal/mol |
13.8209 kcal/mol |
28 87@LB@ | |@LB@5'-UAA...UGCUC CAC GCUGCAAAAACACCAG A CAUU CGCAU...UGG-3'@LB@ ACU CUUGAGCA GGAA UAC GAAAUUCGUUACACCA@LB@ ||| |||:|||| :||| :|| :|||||||||||||||@LB@ UGA GAAUUCGU UCUU GUG UUUUAAGCAAUGUGGU@LB@3'-UUU...UACUU AC C AAUU CCUUU...CAA-5'@LB@ | |@LB@ 58 16@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -33.7219 kcal/mol@LB@Unfolding Energy - mRNA 7.92362 kcal/mol@LB@Unfolding Energy - sRNA 13.8209 kcal/mol@LB@@LB@Position - mRNA 29 -- 86@LB@Position - sRNA 17 -- 57@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 25 |
0.0007384 |
0.09021 |
b3434 |
yhgN |
-11.94 |
0.004015 |
159 -- 197 |
7 -- 41 |
UPF0056 family inner membrane protein |
|
_____________158_____________________________________198\n_____________|_______________________________________|\n5'-UUU...UUGUU_____GC_______CCG__GCAAU_______________GUUAU...CGA-3'\n______________AGCAC__AGAAAGU___CG_____UAUCAGGGAAUUUGA\n______________|||||__|:|||:|___||_____:|:||||:|||:|||\n______________UCGUG__UUUUUUA___GC_____GUGGUCCUUUAGACU\n3'-UUU...GUUCU_____AA_______A____AAU_________________ACACAA-5'\n_____________|_______________________________________|\n_____________42______________________________________6\n |
188 -- 194 |
10 -- 16 |
-30.001 kcal/mol |
8.83552 kcal/mol |
9.22092 kcal/mol |
158 198@LB@ | |@LB@5'-UUU...UUGUU GC CCG GCAAU GUUAU...CGA-3'@LB@ AGCAC AGAAAGU CG UAUCAGGGAAUUUGA@LB@ ||||| |:|||:| || :|:||||:|||:|||@LB@ UCGUG UUUUUUA GC GUGGUCCUUUAGACU@LB@3'-UUU...GUUCU AA A AAU ACACAA-5'@LB@ | |@LB@ 42 6@LB@@LB@@LB@Energy -11.94 kcal/mol@LB@Hybridization Energy -30.001 kcal/mol@LB@Unfolding Energy - mRNA 8.83552 kcal/mol@LB@Unfolding Energy - sRNA 9.22092 kcal/mol@LB@@LB@Position - mRNA 159 -- 197@LB@Position - sRNA 7 -- 41@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 9 |
7.531e-05 |
0.02695 |
b0491 |
fetB |
-11.86 |
0.004271 |
187 -- 209 |
25 -- 47 |
iron export ABC transporter permease; peroxide resistance protein |
|
_____________186_____________________210\n_____________|_______________________|\n5'-GCC...GAAAU___________GCUAU___C___CAUAA...AGA-3'\n______________GCAGGAAGCAC_____GAA_UCG\n______________|||:|||||||_____:||_|||\n______________CGUUCUUCGUG_____UUU_AGC\n3'-UUU...GAAUU___________AAUUU___A___AAUGU...CAA-5'\n_____________|_______________________|\n_____________48______________________24\n |
191 -- 197 |
37 -- 43 |
-22.8314 kcal/mol |
4.71887 kcal/mol |
6.25056 kcal/mol |
186 210@LB@ | |@LB@5'-GCC...GAAAU GCUAU C CAUAA...AGA-3'@LB@ GCAGGAAGCAC GAA UCG@LB@ |||:||||||| :|| |||@LB@ CGUUCUUCGUG UUU AGC@LB@3'-UUU...GAAUU AAUUU A AAUGU...CAA-5'@LB@ | |@LB@ 48 24@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -22.8314 kcal/mol@LB@Unfolding Energy - mRNA 4.71887 kcal/mol@LB@Unfolding Energy - sRNA 6.25056 kcal/mol@LB@@LB@Position - mRNA 187 -- 209@LB@Position - sRNA 25 -- 47@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 37 -- 43@LB@ |
