| 18 |
0.0004863 |
0.08107 |
b2217 |
rcsB |
-10.91 |
0.008593 |
172 -- 193 |
39 -- 59 |
response regulator in two-component regulatory system with RcsC and YojN |
|
_____________171____________________194\n_____________|______________________|\n5'-AAC...GUCAA_________GU_______U___CUAUU...GCG-3'\n______________GAGCUUGCU__AGCAAGG_AGC\n______________:|:||||||__||||||:_|||\n______________UUUGAACGA__UCGUUCU_UCG\n3'-UUU...CCUAC_________AU___________UGAAU...CAA-5'\n_____________|______________________|\n_____________60_____________________38\n |
183 -- 189 |
42 -- 48 |
-25.4912 kcal/mol |
8.43277 kcal/mol |
6.15149 kcal/mol |
171 194@LB@ | |@LB@5'-AAC...GUCAA GU U CUAUU...GCG-3'@LB@ GAGCUUGCU AGCAAGG AGC@LB@ :|:|||||| ||||||: |||@LB@ UUUGAACGA UCGUUCU UCG@LB@3'-UUU...CCUAC AU UGAAU...CAA-5'@LB@ | |@LB@ 60 38@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -25.4912 kcal/mol@LB@Unfolding Energy - mRNA 8.43277 kcal/mol@LB@Unfolding Energy - sRNA 6.15149 kcal/mol@LB@@LB@Position - mRNA 172 -- 193@LB@Position - sRNA 39 -- 59@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 37 |
0.00139 |
0.121 |
b2222 |
atoA |
-4.53 |
0.397320 |
265 -- 276 |
25 -- 38 |
acetyl-CoA:acetoacetyl-CoA transferase beta subunit |
|
_____________264____________277\n_____________|______________|\n5'-CGC...CGUUA______________GUUUA...AUU-3'\n______________ACUUAGGGA__UCG\n______________|||||:::|__|||\n______________UGAAUUUUU__AGC\n3'-UUU...CUUCG_________UA___AAUGU...CAA-5'\n_____________|______________|\n_____________39_____________24\n |
266 -- 272 |
31 -- 37 |
-7.73128 kcal/mol |
1.76584 kcal/mol |
1.4343 kcal/mol |
264 277@LB@ | |@LB@5'-CGC...CGUUA GUUUA...AUU-3'@LB@ ACUUAGGGA UCG@LB@ |||||:::| |||@LB@ UGAAUUUUU AGC@LB@3'-UUU...CUUCG UA AAUGU...CAA-5'@LB@ | |@LB@ 39 24@LB@@LB@@LB@Energy -4.53 kcal/mol@LB@Hybridization Energy -7.73128 kcal/mol@LB@Unfolding Energy - mRNA 1.76584 kcal/mol@LB@Unfolding Energy - sRNA 1.4343 kcal/mol@LB@@LB@Position - mRNA 265 -- 276@LB@Position - sRNA 25 -- 38@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 57 |
0.002825 |
0.1597 |
b2233 |
yfaL |
-10.30 |
0.013161 |
220 -- 233 |
34 -- 47 |
adhesin |
|
_____________219____________234\n_____________|______________|\n5'-UAU...UCUAC______________UCUUU...CAU-3'\n______________GCAAGGAGUAUUUA\n______________|||||:||:|:|||\n______________CGUUCUUCGUGAAU\n3'-UUU...GAAUU______________UUUUU...CAA-5'\n_____________|______________|\n_____________48_____________33\n |
227 -- 233 |
34 -- 40 |
-18.4969 kcal/mol |
2.11117 kcal/mol |
6.08192 kcal/mol |
219 234@LB@ | |@LB@5'-UAU...UCUAC UCUUU...CAU-3'@LB@ GCAAGGAGUAUUUA@LB@ |||||:||:|:|||@LB@ CGUUCUUCGUGAAU@LB@3'-UUU...GAAUU UUUUU...CAA-5'@LB@ | |@LB@ 48 33@LB@@LB@@LB@Energy -10.30 kcal/mol@LB@Hybridization Energy -18.4969 kcal/mol@LB@Unfolding Energy - mRNA 2.11117 kcal/mol@LB@Unfolding Energy - sRNA 6.08192 kcal/mol@LB@@LB@Position - mRNA 220 -- 233@LB@Position - sRNA 34 -- 47@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 137 |
0.01315 |
0.3087 |
b2239 |
glpQ |
-7.04 |
0.107729 |
242 -- 248 |
36 -- 42 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________241_____249\n_____________|_______|\n5'-CGG...AUGAU_______AUAGU...UCA-3'\n______________GAGCACU\n______________:||||||\n______________UUCGUGA\n3'-UUU...CGUUC_______AUUUU...CAA-5'\n_____________|_______|\n_____________43______35\n |
242 -- 248 |
36 -- 42 |
-9.09813 kcal/mol |
0.455964 kcal/mol |
1.60154 kcal/mol |
241 249@LB@ | |@LB@5'-CGG...AUGAU AUAGU...UCA-3'@LB@ GAGCACU@LB@ :||||||@LB@ UUCGUGA@LB@3'-UUU...CGUUC AUUUU...CAA-5'@LB@ | |@LB@ 43 35@LB@@LB@@LB@Energy -7.04 kcal/mol@LB@Hybridization Energy -9.09813 kcal/mol@LB@Unfolding Energy - mRNA 0.455964 kcal/mol@LB@Unfolding Energy - sRNA 1.60154 kcal/mol@LB@@LB@Position - mRNA 242 -- 248@LB@Position - sRNA 36 -- 42@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 129 |
0.01228 |
0.3033 |
b2249 |
yfaY |
-6.27 |
0.166554 |
88 -- 102 |
6 -- 22 |
inactive PncC family protein |
|
_____________87________________103\n_____________|_________________|\n5'-UUG...GGUUA_______UU________CCCUU...AGG-3'\n______________ACGCCAG____UCUGAU\n______________||:||||____||||||\n______________UGUGGUC____AGACUA\n3'-UUU...AGCAA_______CUUU______CACAA-5'\n_____________|_________________|\n_____________23________________5\n |
88 -- 94 |
16 -- 22 |
-16.5501 kcal/mol |
2.71406 kcal/mol |
7.56159 kcal/mol |
87 103@LB@ | |@LB@5'-UUG...GGUUA UU CCCUU...AGG-3'@LB@ ACGCCAG UCUGAU@LB@ ||:|||| ||||||@LB@ UGUGGUC AGACUA@LB@3'-UUU...AGCAA CUUU CACAA-5'@LB@ | |@LB@ 23 5@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -16.5501 kcal/mol@LB@Unfolding Energy - mRNA 2.71406 kcal/mol@LB@Unfolding Energy - sRNA 7.56159 kcal/mol@LB@@LB@Position - mRNA 88 -- 102@LB@Position - sRNA 6 -- 22@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 8 |
5.642e-05 |
0.02272 |
b2282 |
nuoH |
-5.33 |
0.272754 |
189 -- 221 |
13 -- 44 |
NADH:ubiquinone oxidoreductase membrane subunit H |
|
_____________188________________________________222\n_____________|__________________________________|\n5'-CUC...CUCAA________AACAAU_____G_A__U_________CUGAU...GCU-3'\n______________GGAGGCAC______GAGUU_G_UA_CACC_GGAA\n______________:||:||||______:|:||_|_||_||||_||||\n______________UCUUCGUG______UUUAA_C_AU_GUGG_CCUU\n3'-UUU...UUCGU________AAUUU______G_A_______U____UAGAC...CAA-5'\n_____________|__________________________________|\n_____________45_________________________________12\n |
190 -- 196 |
37 -- 43 |
-24.1154 kcal/mol |
6.60325 kcal/mol |
12.1776 kcal/mol |
188 222@LB@ | |@LB@5'-CUC...CUCAA AACAAU G A U CUGAU...GCU-3'@LB@ GGAGGCAC GAGUU G UA CACC GGAA@LB@ :||:|||| :|:|| | || |||| ||||@LB@ UCUUCGUG UUUAA C AU GUGG CCUU@LB@3'-UUU...UUCGU AAUUU G A U UAGAC...CAA-5'@LB@ | |@LB@ 45 12@LB@@LB@@LB@Energy -5.33 kcal/mol@LB@Hybridization Energy -24.1154 kcal/mol@LB@Unfolding Energy - mRNA 6.60325 kcal/mol@LB@Unfolding Energy - sRNA 12.1776 kcal/mol@LB@@LB@Position - mRNA 189 -- 221@LB@Position - sRNA 13 -- 44@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 120 |
0.01039 |
0.2788 |
b2314 |
dedD |
-6.27 |
0.167184 |
42 -- 54 |
45 -- 58 |
membrane-anchored periplasmic protein involved in septation |
|
_____________41_____________55\n_____________|______________|\n5'-UUG...AGAAC______________UUUGG...AUU-3'\n______________AAC_UGCUUGAGCA\n______________|||_|||||:||||\n______________UUG_ACGAAUUCGU\n3'-UUU...CUACU___A__________UCUUC...CAA-5'\n_____________|______________|\n_____________59_____________44\n |
47 -- 53 |
46 -- 52 |
-15.7533 kcal/mol |
3.46622 kcal/mol |
6.01947 kcal/mol |
41 55@LB@ | |@LB@5'-UUG...AGAAC UUUGG...AUU-3'@LB@ AAC UGCUUGAGCA@LB@ ||| |||||:||||@LB@ UUG ACGAAUUCGU@LB@3'-UUU...CUACU A UCUUC...CAA-5'@LB@ | |@LB@ 59 44@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -15.7533 kcal/mol@LB@Unfolding Energy - mRNA 3.46622 kcal/mol@LB@Unfolding Energy - sRNA 6.01947 kcal/mol@LB@@LB@Position - mRNA 42 -- 54@LB@Position - sRNA 45 -- 58@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 86 |
0.005829 |
0.217 |
b2399 |
yfeD |
-9.44 |
0.023742 |
136 -- 182 |
13 -- 56 |
DUF1323 family putative DNA-binding protein |
|
_____________135______________________________________________183\n_____________|________________________________________________|\n5'-UGA...ACAUC_______CU________G_A___UC____________ACGC_______UUCGC...GGA-3'\n______________CUUGCUU__GCGGGAAG_G_UUA__GGAUU_GUUACA____UUAGGGA\n______________|||||||__||::||||_:_|||__::|||_||||||____::|||:|\n______________GAACGAA__CGUUCUUC_U_AAU__UUUAA_CAAUGU____GGUCCUU\n3'-UUU...ACUUU_______UU________G_G___UU_____G_________________UAGAC...CAA-5'\n_____________|________________________________________________|\n_____________57_______________________________________________12\n |
146 -- 152 |
40 -- 46 |
-35.8501 kcal/mol |
12.5789 kcal/mol |
13.8302 kcal/mol |
135 183@LB@ | |@LB@5'-UGA...ACAUC CU G A UC ACGC UUCGC...GGA-3'@LB@ CUUGCUU GCGGGAAG G UUA GGAUU GUUACA UUAGGGA@LB@ ||||||| ||::|||| : ||| ::||| |||||| ::|||:|@LB@ GAACGAA CGUUCUUC U AAU UUUAA CAAUGU GGUCCUU@LB@3'-UUU...ACUUU UU G G UU G UAGAC...CAA-5'@LB@ | |@LB@ 57 12@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -35.8501 kcal/mol@LB@Unfolding Energy - mRNA 12.5789 kcal/mol@LB@Unfolding Energy - sRNA 13.8302 kcal/mol@LB@@LB@Position - mRNA 136 -- 182@LB@Position - sRNA 13 -- 56@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 199 |
0.02405 |
0.3893 |
b2412 |
zipA |
-4.86 |
0.342002 |
121 -- 136 |
25 -- 40 |
FtsZ stabilizer |
|
_____________120______________137\n_____________|________________|\n5'-CAG...CACUU__________UAA___GCAAA...CUU-3'\n______________GCACUUGAGG___UCG\n______________||||||:|::___|||\n______________CGUGAAUUUU___AGC\n3'-UUU...UUCUU__________UUA___AAUGU...CAA-5'\n_____________|________________|\n_____________41_______________24\n |
124 -- 130 |
31 -- 37 |
-13.2366 kcal/mol |
6.7246 kcal/mol |
1.64821 kcal/mol |
120 137@LB@ | |@LB@5'-CAG...CACUU UAA GCAAA...CUU-3'@LB@ GCACUUGAGG UCG@LB@ ||||||:|:: |||@LB@ CGUGAAUUUU AGC@LB@3'-UUU...UUCUU UUA AAUGU...CAA-5'@LB@ | |@LB@ 41 24@LB@@LB@@LB@Energy -4.86 kcal/mol@LB@Hybridization Energy -13.2366 kcal/mol@LB@Unfolding Energy - mRNA 6.7246 kcal/mol@LB@Unfolding Energy - sRNA 1.64821 kcal/mol@LB@@LB@Position - mRNA 121 -- 136@LB@Position - sRNA 25 -- 40@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 92 |
0.006692 |
0.2343 |
b2421 |
cysM |
-10.79 |
0.009324 |
40 -- 63 |
37 -- 60 |
cysteine synthase B (O-acetylserine sulfhydrolase B) |
|
_____________39_______________________64\n_____________|________________________|\n5'-GCU...GAUGA__________CUC___CA______CUGAU...GCA-3'\n______________GGAACUUGCU___GCA__AAGCGC\n______________|:||||||||___|||__||||:|\n______________CUUUGAACGA___CGU__UUCGUG\n3'-UUU...CCCUA__________AUU___UC______AAUUU...CAA-5'\n_____________|________________________|\n_____________61_______________________36\n |
43 -- 49 |
51 -- 57 |
-24.0401 kcal/mol |
7.00094 kcal/mol |
6.24651 kcal/mol |
39 64@LB@ | |@LB@5'-GCU...GAUGA CUC CA CUGAU...GCA-3'@LB@ GGAACUUGCU GCA AAGCGC@LB@ |:|||||||| ||| ||||:|@LB@ CUUUGAACGA CGU UUCGUG@LB@3'-UUU...CCCUA AUU UC AAUUU...CAA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -24.0401 kcal/mol@LB@Unfolding Energy - mRNA 7.00094 kcal/mol@LB@Unfolding Energy - sRNA 6.24651 kcal/mol@LB@@LB@Position - mRNA 40 -- 63@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 51 -- 57@LB@ |
