| 144 |
0.005571 |
0.1363 |
b1843 |
yobB |
-15.05 |
0.004361 |
174 -- 196 |
50 -- 72 |
C-N hydrolase family protein |
|
_____________173_____________________197\n_____________|_______________________|\n5'-CCU...UAAUU______C____U___________CAUUA...CCA-3'\n______________UGCAGU_AUUU_GAAAAGGAAGU\n______________||||||_|||:_:||||||||||\n______________ACGUCA_UAAG_UUUUUCCUUCA\n3'-UUU...ACGAU______U____U___________UUCUG...ACG-5'\n_____________|_______________________|\n_____________73______________________49\n |
190 -- 196 |
50 -- 56 |
-24.355 kcal/mol |
5.29079 kcal/mol |
4.01539 kcal/mol |
173 197@LB@ | |@LB@5'-CCU...UAAUU C U CAUUA...CCA-3'@LB@ UGCAGU AUUU GAAAAGGAAGU@LB@ |||||| |||: :||||||||||@LB@ ACGUCA UAAG UUUUUCCUUCA@LB@3'-UUU...ACGAU U U UUCUG...ACG-5'@LB@ | |@LB@ 73 49@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -24.355 kcal/mol@LB@Unfolding Energy - mRNA 5.29079 kcal/mol@LB@Unfolding Energy - sRNA 4.01539 kcal/mol@LB@@LB@Position - mRNA 174 -- 196@LB@Position - sRNA 50 -- 72@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 30 |
0.0001707 |
0.01997 |
b1847 |
yebF |
-12.53 |
0.024655 |
175 -- 194 |
68 -- 88 |
extracellular Colicin M immunity family protein |
|
_____________174___________________195\n_____________|_____________________|\n5'-AAC...UCUCC__________________G__AAAAA...CAA-3'\n______________UGAAUC_AUUGUGCUAUG_AG\n______________:|||||_|||||||||||_||\n______________GCUUAG_UAACACGAUAC_UC\n3'-UUU...AGCAU______U___________G__AUUAA...ACG-5'\n_____________|_____________________|\n_____________89____________________67\n |
185 -- 191 |
71 -- 77 |
-25.1828 kcal/mol |
8.15856 kcal/mol |
4.50023 kcal/mol |
174 195@LB@ | |@LB@5'-AAC...UCUCC G AAAAA...CAA-3'@LB@ UGAAUC AUUGUGCUAUG AG@LB@ :||||| ||||||||||| ||@LB@ GCUUAG UAACACGAUAC UC@LB@3'-UUU...AGCAU U G AUUAA...ACG-5'@LB@ | |@LB@ 89 67@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -25.1828 kcal/mol@LB@Unfolding Energy - mRNA 8.15856 kcal/mol@LB@Unfolding Energy - sRNA 4.50023 kcal/mol@LB@@LB@Position - mRNA 175 -- 194@LB@Position - sRNA 68 -- 88@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 106 |
0.003401 |
0.1114 |
b1848 |
yebG |
-10.18 |
0.099613 |
222 -- 299 |
16 -- 71 |
DNA damage-inducible protein regulated by LexA |
|
_____________221_______________________________________________________________________________300\n_____________|_________________________________________________________________________________|\n5'-GUU...AAUAC_____C_____U_____C_________A_____CGUUUACCAGCAAAAA__A______________GACAAAA________A-3'\n______________GUAGU_AUUCG_GAGGG_GAAG__AGA_AAUGU________________GG_AGC_CGAUGCUUAU_______UGCUUGAU\n______________|:|||_||||:_:|::|_||||__|||_|||:|________________||_|||_|:|:||::||_______:||||||:\n______________CGUCA_UAAGU_UUUUC_CUUC__UCU_UUAUA________________CC_UCG_GUUGCGGGUA_______GCGAACUG\n3'-UUU...CGAUA_____U_____U__________AU___G___________________________C_________________________CAACG...ACG-5'\n_____________|_________________________________________________________________________________|\n_____________72________________________________________________________________________________15\n |
293 -- 299 |
16 -- 22 |
-43.4853 kcal/mol |
15.7801 kcal/mol |
17.5254 kcal/mol |
221 300@LB@ | |@LB@5'-GUU...AAUAC C U C A CGUUUACCAGCAAAAA A GACAAAA A-3'@LB@ GUAGU AUUCG GAGGG GAAG AGA AAUGU GG AGC CGAUGCUUAU UGCUUGAU@LB@ |:||| ||||: :|::| |||| ||| |||:| || ||| |:|:||::|| :||||||:@LB@ CGUCA UAAGU UUUUC CUUC UCU UUAUA CC UCG GUUGCGGGUA GCGAACUG@LB@3'-UUU...CGAUA U U AU G C CAACG...ACG-5'@LB@ | |@LB@ 72 15@LB@@LB@@LB@Energy -10.18 kcal/mol@LB@Hybridization Energy -43.4853 kcal/mol@LB@Unfolding Energy - mRNA 15.7801 kcal/mol@LB@Unfolding Energy - sRNA 17.5254 kcal/mol@LB@@LB@Position - mRNA 222 -- 299@LB@Position - sRNA 16 -- 71@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 63 |
0.00104 |
0.05816 |
b1856 |
mepM |
-14.49 |
0.006560 |
139 -- 249 |
1 -- 88 |
murein DD-endopeptidase space-maker hydrolase septation protein |
|
_____________138________________________________________________________________________________________________________________250\n_____________|__________________________________________________________________________________________________________________|\n5'-CAA...AUUCC__________A___CAACCAG______AGCUGCCU_________AU___U__G__A___AUUAC_______AGAUA____GCUCU_____CC_______UAAUA__________GACCA...UCG-3'\n______________UGAGUCAAUU__GC_______UAUGCG_________GAAAGGAG__UAA_GA_GA_GUG_____GUGCAAC_____GCCC_____GUCGC__UGGCGUU_____AUUUACC_GC\n______________:||:||||||__||_______|||||:_________:||||||:__|||_||_:|_:||_____|:|||||_____||||_____:||||__||:||||_____|||:|||_||\n______________GCUUAGUUAA__CG_______AUACGU_________UUUUCCUU__AUU_CU_UU_UAC_____CGCGUUG_____CGGG_____UAGCG__ACUGCAA_____UAAGUGG_CG\n3'-UUU...AGCAU__________CA_______________CAUUAAGUU________C_______G__A___CU_____________________________A________CG__________A__-5'\n_____________|_________________________________________________________________________________________________________________|\n_____________89________________________________________________________________________________________________________________1\n |
241 -- 247 |
4 -- 10 |
-60.5282 kcal/mol |
25.2709 kcal/mol |
20.7761 kcal/mol |
138 250@LB@ | |@LB@5'-CAA...AUUCC A CAACCAG AGCUGCCU AU U G A AUUAC AGAUA GCUCU CC UAAUA GACCA...UCG-3'@LB@ UGAGUCAAUU GC UAUGCG GAAAGGAG UAA GA GA GUG GUGCAAC GCCC GUCGC UGGCGUU AUUUACC GC@LB@ :||:|||||| || |||||: :||||||: ||| || :| :|| |:||||| |||| :|||| ||:|||| |||:||| ||@LB@ GCUUAGUUAA CG AUACGU UUUUCCUU AUU CU UU UAC CGCGUUG CGGG UAGCG ACUGCAA UAAGUGG CG@LB@3'-UUU...AGCAU CA CAUUAAGUU C G A CU A CG A -5'@LB@ | |@LB@ 89 1@LB@@LB@@LB@Energy -14.49 kcal/mol@LB@Hybridization Energy -60.5282 kcal/mol@LB@Unfolding Energy - mRNA 25.2709 kcal/mol@LB@Unfolding Energy - sRNA 20.7761 kcal/mol@LB@@LB@Position - mRNA 139 -- 249@LB@Position - sRNA 1 -- 88@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 162 |
0.006351 |
0.1377 |
b1869 |
yecN |
-10.06 |
0.106335 |
266 -- 273 |
1 -- 8 |
MAPEG family inner membrane protein |
|
_____________265______274\n_____________|________|\n5'-UCA...GUCGU________GAAUG...GCG-3'\n______________UCGCCUGC\n______________||:|||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
267 -- 273 |
1 -- 7 |
-14.5941 kcal/mol |
2.17055 kcal/mol |
2.36381 kcal/mol |
265 274@LB@ | |@LB@5'-UCA...GUCGU GAAUG...GCG-3'@LB@ UCGCCUGC@LB@ ||:|||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.06 kcal/mol@LB@Hybridization Energy -14.5941 kcal/mol@LB@Unfolding Energy - mRNA 2.17055 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 266 -- 273@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 183 |
0.007971 |
0.1528 |
b1874 |
cutC |
-9.62 |
0.134922 |
271 -- 300 |
54 -- 87 |
copper homeostasis protein |
|
_____________270________________________________300\n_____________|__________________________________|\n5'-CCG...AGACA_____G____A__________CCC___________-3'\n______________GAGUU_AAUU_UGC___GCAG_____CAAAAGAGG\n______________||:|:_||||_|||___||||_____|||||:|||\n______________CUUAG_UUAA_ACG___CGUC_____GUUUUUUCC\n3'-UUU...GCAUG__________C___AUA____AUUAA_________UUCAU...ACG-5'\n_____________|___________________________________|\n_____________88__________________________________53\n |
294 -- 300 |
54 -- 60 |
-18.7273 kcal/mol |
5.34866 kcal/mol |
3.76003 kcal/mol |
270 300@LB@ | |@LB@5'-CCG...AGACA G A CCC -3'@LB@ GAGUU AAUU UGC GCAG CAAAAGAGG@LB@ ||:|: |||| ||| |||| |||||:|||@LB@ CUUAG UUAA ACG CGUC GUUUUUUCC@LB@3'-UUU...GCAUG C AUA AUUAA UUCAU...ACG-5'@LB@ | |@LB@ 88 53@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -18.7273 kcal/mol@LB@Unfolding Energy - mRNA 5.34866 kcal/mol@LB@Unfolding Energy - sRNA 3.76003 kcal/mol@LB@@LB@Position - mRNA 271 -- 300@LB@Position - sRNA 54 -- 87@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 170 |
0.006792 |
0.1407 |
b1884 |
cheR |
-8.41 |
0.246459 |
6 -- 26 |
68 -- 89 |
chemotaxis regulator protein-glutamate methyltransferase |
|
_____________5_______________________27\n_____________|_______________________|\n______5'-GCCAG______________A__CA____AACGC...UGA-3'\n______________AUGGAUCAG__GUG_CU__GCAG\n______________|:|:||||:__|||_||__||||\n______________UGCUUAGUU__CAC_GA__CGUC\n3'-UUU...CAGCA_________AA______UA____AUUAA...ACG-5'\n_____________|_______________________|\n_____________90______________________67\n |
8 -- 14 |
81 -- 87 |
-16.9281 kcal/mol |
4.01768 kcal/mol |
4.506 kcal/mol |
5 27@LB@ | |@LB@ 5'-GCCAG A CA AACGC...UGA-3'@LB@ AUGGAUCAG GUG CU GCAG@LB@ |:|:||||: ||| || ||||@LB@ UGCUUAGUU CAC GA CGUC@LB@3'-UUU...CAGCA AA UA AUUAA...ACG-5'@LB@ | |@LB@ 90 67@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -16.9281 kcal/mol@LB@Unfolding Energy - mRNA 4.01768 kcal/mol@LB@Unfolding Energy - sRNA 4.506 kcal/mol@LB@@LB@Position - mRNA 6 -- 26@LB@Position - sRNA 68 -- 89@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 104 |
0.00334 |
0.1114 |
b1923 |
fliC |
-7.97 |
0.300066 |
194 -- 205 |
75 -- 89 |
flagellar filament structural protein (flagellin) |
|
_____________193_____________206\n_____________|_______________|\n5'-GUU...GGAUA_______________ACAAG...CUU-3'\n______________ACGAAUCA__UG_GC\n______________||||||||__||_||\n______________UGCUUAGU__AC_CG\n3'-UUU...CAGCA________UA__A__AUACG...ACG-5'\n_____________|_______________|\n_____________90______________74\n |
195 -- 201 |
82 -- 88 |
-12.363 kcal/mol |
2.14901 kcal/mol |
2.24483 kcal/mol |
193 206@LB@ | |@LB@5'-GUU...GGAUA ACAAG...CUU-3'@LB@ ACGAAUCA UG GC@LB@ |||||||| || ||@LB@ UGCUUAGU AC CG@LB@3'-UUU...CAGCA UA A AUACG...ACG-5'@LB@ | |@LB@ 90 74@LB@@LB@@LB@Energy -7.97 kcal/mol@LB@Hybridization Energy -12.363 kcal/mol@LB@Unfolding Energy - mRNA 2.14901 kcal/mol@LB@Unfolding Energy - sRNA 2.24483 kcal/mol@LB@@LB@Position - mRNA 194 -- 205@LB@Position - sRNA 75 -- 89@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 180 |
0.007638 |
0.1495 |
b2007 |
yeeX |
-12.65 |
0.022752 |
43 -- 93 |
41 -- 87 |
UPF0265 family protein |
|
_____________42____________________________________________________94\n_____________|_____________________________________________________|\n5'-AUC...CUUCA______UCU______C___UUC_______C______UAAAG____U_______AAAAG...AAA-3'\n______________GAAUCA____UGCUG_UGC___GAUUCAG__AAGGA_____GGUA_GAUAGUG\n______________||||||____||||:_|||___:|||||:__|||||_____:|||_||:|:|:\n______________CUUAGU____ACGAU_ACG___UUAAGUU__UUCCU_____UCAU_CUGUUAU\n3'-UUU...GCAUG______UAAC_________UCA_______UU______________U_______ACCUC...ACG-5'\n_____________|_____________________________________________________|\n_____________88____________________________________________________40\n |
87 -- 93 |
41 -- 47 |
-32.6236 kcal/mol |
14.1148 kcal/mol |
5.85929 kcal/mol |
42 94@LB@ | |@LB@5'-AUC...CUUCA UCU C UUC C UAAAG U AAAAG...AAA-3'@LB@ GAAUCA UGCUG UGC GAUUCAG AAGGA GGUA GAUAGUG@LB@ |||||| ||||: ||| :|||||: ||||| :||| ||:|:|:@LB@ CUUAGU ACGAU ACG UUAAGUU UUCCU UCAU CUGUUAU@LB@3'-UUU...GCAUG UAAC UCA UU U ACCUC...ACG-5'@LB@ | |@LB@ 88 40@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -32.6236 kcal/mol@LB@Unfolding Energy - mRNA 14.1148 kcal/mol@LB@Unfolding Energy - sRNA 5.85929 kcal/mol@LB@@LB@Position - mRNA 43 -- 93@LB@Position - sRNA 41 -- 87@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 6 |
5.595e-06 |
0.003285 |
b2048 |
cpsG |
-15.91 |
0.002276 |
49 -- 82 |
20 -- 54 |
phosphomannomutase |
|
_____________48__________________________________83\n_____________|___________________________________|\n5'-GGG...AUCUC_________________U____UU___GG______ACGGA...GCG-3'\n______________GAAG_AGGAUGAUGUGG_GCGU__CGC__AUCGCU\n______________||||_|:||::||:|||_|||:__|||__||||||\n______________CUUC_UUCUGUUAUACC_CGCG__GCG__UAGCGA\n3'-UUU...UUUUC____A____________U____UU___GG______ACUGC...ACG-5'\n_____________|___________________________________|\n_____________55__________________________________19\n |
54 -- 60 |
42 -- 48 |
-40.4755 kcal/mol |
10.8622 kcal/mol |
13.7092 kcal/mol |
48 83@LB@ | |@LB@5'-GGG...AUCUC U UU GG ACGGA...GCG-3'@LB@ GAAG AGGAUGAUGUGG GCGU CGC AUCGCU@LB@ |||| |:||::||:||| |||: ||| ||||||@LB@ CUUC UUCUGUUAUACC CGCG GCG UAGCGA@LB@3'-UUU...UUUUC A U UU GG ACUGC...ACG-5'@LB@ | |@LB@ 55 19@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -40.4755 kcal/mol@LB@Unfolding Energy - mRNA 10.8622 kcal/mol@LB@Unfolding Energy - sRNA 13.7092 kcal/mol@LB@@LB@Position - mRNA 49 -- 82@LB@Position - sRNA 20 -- 54@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 42 -- 48@LB@ |
