| 120 |
0.004053 |
0.119 |
b2441 |
eutB |
-6.09 |
0.606518 |
293 -- 299 |
73 -- 79 |
ethanolamine ammonia-lyase large subunit heavy chain |
|
_____________292_____300\n_____________|_______|\n5'-CUG...GGGGA_______G-3'\n______________UGUGCUG\n______________||||||:\n______________ACACGAU\n3'-UUU...AGUUA_______ACGUC...ACG-5'\n_____________|_______|\n_____________80______72\n |
293 -- 299 |
73 -- 79 |
-8.7652 kcal/mol |
1.34517 kcal/mol |
1.33434 kcal/mol |
292 300@LB@ | |@LB@5'-CUG...GGGGA G-3'@LB@ UGUGCUG@LB@ ||||||:@LB@ ACACGAU@LB@3'-UUU...AGUUA ACGUC...ACG-5'@LB@ | |@LB@ 80 72@LB@@LB@@LB@Energy -6.09 kcal/mol@LB@Hybridization Energy -8.7652 kcal/mol@LB@Unfolding Energy - mRNA 1.34517 kcal/mol@LB@Unfolding Energy - sRNA 1.33434 kcal/mol@LB@@LB@Position - mRNA 293 -- 299@LB@Position - sRNA 73 -- 79@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 19 |
4.82e-05 |
0.008725 |
b2452 |
eutH |
-15.86 |
0.002353 |
187 -- 206 |
37 -- 56 |
ethanolamine transporter |
|
_____________186___________________207\n_____________|_____________________|\n5'-UUG...CUAAC_______A_____________AUUAA...UCC-3'\n______________AGGGAGU_AAGGCGAUG_GGA\n______________|||:|||_|||:|:||:_|||\n______________UCCUUCA_UUCUGUUAU_CCU\n3'-UUU...UUUUU_________________A___CGCGU...ACG-5'\n_____________|_____________________|\n_____________57____________________36\n |
197 -- 203 |
41 -- 47 |
-22.1606 kcal/mol |
2.59538 kcal/mol |
3.6645 kcal/mol |
186 207@LB@ | |@LB@5'-UUG...CUAAC A AUUAA...UCC-3'@LB@ AGGGAGU AAGGCGAUG GGA@LB@ |||:||| |||:|:||: |||@LB@ UCCUUCA UUCUGUUAU CCU@LB@3'-UUU...UUUUU A CGCGU...ACG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -15.86 kcal/mol@LB@Hybridization Energy -22.1606 kcal/mol@LB@Unfolding Energy - mRNA 2.59538 kcal/mol@LB@Unfolding Energy - sRNA 3.6645 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 51 |
0.0005809 |
0.04013 |
b2507 |
guaA |
-13.60 |
0.012166 |
41 -- 74 |
55 -- 93 |
GMP synthetase (glutamine aminotransferase) |
|
_____________40______________________________________75\n_____________|_______________________________________|\n5'-GGC...GGAGU_______U___________G______GC___________CCACG...ACU-3'\n______________UUGUACG_AUCA_____GC_GUGCGG__AUUCAGGAAAG\n______________|:|||||_||||_____||_:|||:|__|||||::||||\n______________AGCAUGC_UAGU_____CG_UACGUC__UAAGUUUUUUC\n3'-UUU...GCCGC_______U____UAACA__A______AU___________CUUCA...ACG-5'\n_____________|_______________________________________|\n_____________94______________________________________54\n |
41 -- 47 |
87 -- 93 |
-31.8361 kcal/mol |
13.3993 kcal/mol |
4.84189 kcal/mol |
40 75@LB@ | |@LB@5'-GGC...GGAGU U G GC CCACG...ACU-3'@LB@ UUGUACG AUCA GC GUGCGG AUUCAGGAAAG@LB@ |:||||| |||| || :|||:| |||||::||||@LB@ AGCAUGC UAGU CG UACGUC UAAGUUUUUUC@LB@3'-UUU...GCCGC U UAACA A AU CUUCA...ACG-5'@LB@ | |@LB@ 94 54@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -31.8361 kcal/mol@LB@Unfolding Energy - mRNA 13.3993 kcal/mol@LB@Unfolding Energy - sRNA 4.84189 kcal/mol@LB@@LB@Position - mRNA 41 -- 74@LB@Position - sRNA 55 -- 93@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 87 -- 93@LB@ |
| 40 |
0.000329 |
0.02897 |
b2513 |
yfgM |
-16.53 |
0.001389 |
180 -- 205 |
37 -- 63 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________179_________________________206\n_____________|___________________________|\n5'-GGC...CUGGG_____________A_______C_____AAUUU...UUG-3'\n______________UUAAGGAAGG_AG_AGGACAG_GUGGA\n______________|:||::||||_||_|:||||:_:||||\n______________AGUUUUUUCC_UC_UUCUGUU_UACCU\n3'-UUU...CAUUA__________U__A_______A_____CGCGU...ACG-5'\n_____________|___________________________|\n_____________64__________________________36\n |
193 -- 199 |
43 -- 49 |
-25.2652 kcal/mol |
3.41523 kcal/mol |
5.31676 kcal/mol |
179 206@LB@ | |@LB@5'-GGC...CUGGG A C AAUUU...UUG-3'@LB@ UUAAGGAAGG AG AGGACAG GUGGA@LB@ |:||::|||| || |:||||: :||||@LB@ AGUUUUUUCC UC UUCUGUU UACCU@LB@3'-UUU...CAUUA U A A CGCGU...ACG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -16.53 kcal/mol@LB@Hybridization Energy -25.2652 kcal/mol@LB@Unfolding Energy - mRNA 3.41523 kcal/mol@LB@Unfolding Energy - sRNA 5.31676 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 2 |
4.208e-07 |
0.0007412 |
b2531 |
iscR |
-21.46 |
0.000012 |
188 -- 264 |
2 -- 56 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________187___________________________________________________________________________265\n_____________|_____________________________________________________________________________|\n5'-AUG...UUUGA__U___________UG_GACUGACAUCUAAA______U_____GUGACCG__A______________C__A__U___AAGCG...AAC-3'\n______________GG_GAAGUAAGACA__A______________GGGCGC_AUGCC_______CA_UGCUUGACGUUGCG_UC_AC_CUG\n______________:|_|||||||||||__|______________|:||||_|:|||_______||_:||||||||||||:_||_||_|||\n______________UC_CUUCAUUCUGU__U______________CUCGCG_UGCGG_______GU_GCGAACUGCAACGU_AG_UG_GAC\n3'-UUU...UUUUU______________UA_AC__________________U______________A______________A_________G-5'\n_____________|_____________________________________________________________________________|\n_____________57____________________________________________________________________________1\n |
244 -- 250 |
14 -- 20 |
-58.8762 kcal/mol |
20.5805 kcal/mol |
16.8438 kcal/mol |
187 265@LB@ | |@LB@5'-AUG...UUUGA U UG GACUGACAUCUAAA U GUGACCG A C A U AAGCG...AAC-3'@LB@ GG GAAGUAAGACA A GGGCGC AUGCC CA UGCUUGACGUUGCG UC AC CUG@LB@ :| ||||||||||| | |:|||| |:||| || :||||||||||||: || || |||@LB@ UC CUUCAUUCUGU U CUCGCG UGCGG GU GCGAACUGCAACGU AG UG GAC@LB@3'-UUU...UUUUU UA AC U A A G-5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -21.46 kcal/mol@LB@Hybridization Energy -58.8762 kcal/mol@LB@Unfolding Energy - mRNA 20.5805 kcal/mol@LB@Unfolding Energy - sRNA 16.8438 kcal/mol@LB@@LB@Position - mRNA 188 -- 264@LB@Position - sRNA 2 -- 56@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 145 |
0.00562 |
0.1365 |
b2532 |
trmJ |
-9.44 |
0.148020 |
215 -- 233 |
68 -- 84 |
tRNA mC32 mU32 2'-O-methyltransferase SAM-dependent |
|
_____________214_________________234\n_____________|___________________|\n5'-CGU...AAUAU__G__________G__G__ACGUC...UGU-3'\n______________UC_AAUUGUGCUG_UG_AG\n______________||_|||||||||:_||_||\n______________AG_UUAACACGAU_AC_UC\n3'-UUU...UGCUU________________G__AUUAA...ACG-5'\n_____________|___________________|\n_____________85__________________67\n |
221 -- 227 |
73 -- 79 |
-16.7979 kcal/mol |
3.71432 kcal/mol |
3.64047 kcal/mol |
214 234@LB@ | |@LB@5'-CGU...AAUAU G G G ACGUC...UGU-3'@LB@ UC AAUUGUGCUG UG AG@LB@ || |||||||||: || ||@LB@ AG UUAACACGAU AC UC@LB@3'-UUU...UGCUU G AUUAA...ACG-5'@LB@ | |@LB@ 85 67@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -16.7979 kcal/mol@LB@Unfolding Energy - mRNA 3.71432 kcal/mol@LB@Unfolding Energy - sRNA 3.64047 kcal/mol@LB@@LB@Position - mRNA 215 -- 233@LB@Position - sRNA 68 -- 84@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 123 |
0.004425 |
0.1258 |
b2535 |
csiE |
-7.63 |
0.347411 |
1 -- 40 |
5 -- 36 |
stationary phase inducible protein |
|
______________1_______________________________________41\n______________|_______________________________________|\n___________5'-__AG___UAA____UGA_____A_C___AUAAU_______AAAAC...UGG-3'\n______________GC__AAC___CCCA___UCGCU_G_ACG_____CAUUCAC\n______________||__|||___||||___|||||_|_|||_____|||||||\n______________CG__UUG___GGGU___AGCGA_C_UGC_____GUAAGUG\n3'-UUU...UACCU__CG___C______________A_____AAC_________GACG-5'\n_____________|________________________________________|\n_____________37_______________________________________4\n |
34 -- 40 |
5 -- 11 |
-25.9316 kcal/mol |
3.04784 kcal/mol |
15.2569 kcal/mol |
1 41@LB@ | |@LB@ 5'- AG UAA UGA A C AUAAU AAAAC...UGG-3'@LB@ GC AAC CCCA UCGCU G ACG CAUUCAC@LB@ || ||| |||| ||||| | ||| |||||||@LB@ CG UUG GGGU AGCGA C UGC GUAAGUG@LB@3'-UUU...UACCU CG C A AAC GACG-5'@LB@ | |@LB@ 37 4@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -25.9316 kcal/mol@LB@Unfolding Energy - mRNA 3.04784 kcal/mol@LB@Unfolding Energy - sRNA 15.2569 kcal/mol@LB@@LB@Position - mRNA 1 -- 40@LB@Position - sRNA 5 -- 36@LB@Position Seed - mRNA 34 -- 40@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 15 |
2.607e-05 |
0.006123 |
b2552 |
hmp |
-15.14 |
0.004063 |
170 -- 224 |
20 -- 85 |
fused nitric oxide dioxygenase/dihydropteridine reductase 2 |
|
_____________169___________________________________________________________________225\n_____________|_____________________________________________________________________|\n5'-AUU...GAUAC_______AAG_______________________________C_____CUU______UCAAA________ACAGU...UUA-3'\n______________AUCAAUU_____AUGCA_______AAAAAAGGA____AGAC_AUAUG___GA_CGC_____CCAUCGCU\n______________|||||||_____|||||_______|||||||||____||||_|||||___||_|||_____||||||||\n______________UAGUUAA_____UACGU_______UUUUUUCCU____UCUG_UAUAC___CU_GCG_____GGUAGCGA\n3'-UUU...AUGCU_______CACGA_____CAUUAAG_________UCAU____U__________C___UUGCG________ACUGC...ACG-5'\n_____________|_____________________________________________________________________|\n_____________86____________________________________________________________________19\n |
218 -- 224 |
20 -- 26 |
-42.0201 kcal/mol |
9.32625 kcal/mol |
17.5545 kcal/mol |
169 225@LB@ | |@LB@5'-AUU...GAUAC AAG C CUU UCAAA ACAGU...UUA-3'@LB@ AUCAAUU AUGCA AAAAAAGGA AGAC AUAUG GA CGC CCAUCGCU@LB@ ||||||| ||||| ||||||||| |||| ||||| || ||| ||||||||@LB@ UAGUUAA UACGU UUUUUUCCU UCUG UAUAC CU GCG GGUAGCGA@LB@3'-UUU...AUGCU CACGA CAUUAAG UCAU U C UUGCG ACUGC...ACG-5'@LB@ | |@LB@ 86 19@LB@@LB@@LB@Energy -15.14 kcal/mol@LB@Hybridization Energy -42.0201 kcal/mol@LB@Unfolding Energy - mRNA 9.32625 kcal/mol@LB@Unfolding Energy - sRNA 17.5545 kcal/mol@LB@@LB@Position - mRNA 170 -- 224@LB@Position - sRNA 20 -- 85@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 160 |
0.006309 |
0.1377 |
b2602 |
yfiL |
-11.97 |
0.035037 |
175 -- 199 |
46 -- 76 |
lipoprotein |
|
_____________174_____________________________200\n_____________|_______________________________|\n5'-CCU...AAUCC__________________________A____AAUGA...GGU-3'\n______________GCUAUGC_____UUUGAAAAAGGA_G_AAGA\n______________|||||||_____||::||||||||_|_||||\n______________CGAUACG_____AAGUUUUUUCCU_C_UUCU\n3'-UUU...UAACA_______UCAUU____________U_A____GUUAU...ACG-5'\n_____________|_______________________________|\n_____________77______________________________45\n |
187 -- 193 |
53 -- 59 |
-23.3315 kcal/mol |
6.08708 kcal/mol |
5.27798 kcal/mol |
174 200@LB@ | |@LB@5'-CCU...AAUCC A AAUGA...GGU-3'@LB@ GCUAUGC UUUGAAAAAGGA G AAGA@LB@ ||||||| ||::|||||||| | ||||@LB@ CGAUACG AAGUUUUUUCCU C UUCU@LB@3'-UUU...UAACA UCAUU U A GUUAU...ACG-5'@LB@ | |@LB@ 77 45@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -23.3315 kcal/mol@LB@Unfolding Energy - mRNA 6.08708 kcal/mol@LB@Unfolding Energy - sRNA 5.27798 kcal/mol@LB@@LB@Position - mRNA 175 -- 199@LB@Position - sRNA 46 -- 76@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 82 |
0.001946 |
0.08273 |
b2661 |
gabD |
-10.13 |
0.102437 |
19 -- 25 |
1 -- 7 |
succinate-semialdehyde dehydrogenase I NADP-dependent |
|
_____________18______26\n_____________|_______|\n5'-CAC...AUCCA_______AAUGC...CGG-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
19 -- 25 |
1 -- 7 |
-13.7555 kcal/mol |
1.28845 kcal/mol |
2.34039 kcal/mol |
18 26@LB@ | |@LB@5'-CAC...AUCCA AAUGC...CGG-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -10.13 kcal/mol@LB@Hybridization Energy -13.7555 kcal/mol@LB@Unfolding Energy - mRNA 1.28845 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 19 -- 25@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 1 -- 7@LB@ |
