| 148 |
0.005829 |
0.1368 |
b2962 |
yggX |
-8.12 |
0.280656 |
21 -- 35 |
68 -- 81 |
oxidative damage protective factor for iron-sulfur proteins |
|
_____________20______________36\n_____________|_______________|\n5'-UCA...UAGAU______C________CUUCC...AGA-3'\n______________AUUGUG_CUAUGUGG\n______________||||||_|||||::|\n______________UAACAC_GAUACGUC\n3'-UUU...UUAGU_______________AUUAA...ACG-5'\n_____________|_______________|\n_____________82______________67\n |
28 -- 34 |
69 -- 75 |
-14.4611 kcal/mol |
4.51468 kcal/mol |
1.82249 kcal/mol |
20 36@LB@ | |@LB@5'-UCA...UAGAU C CUUCC...AGA-3'@LB@ AUUGUG CUAUGUGG@LB@ |||||| |||||::|@LB@ UAACAC GAUACGUC@LB@3'-UUU...UUAGU AUUAA...ACG-5'@LB@ | |@LB@ 82 67@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -14.4611 kcal/mol@LB@Unfolding Energy - mRNA 4.51468 kcal/mol@LB@Unfolding Energy - sRNA 1.82249 kcal/mol@LB@@LB@Position - mRNA 21 -- 35@LB@Position - sRNA 68 -- 81@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 70 |
0.001371 |
0.06901 |
b2989 |
yghU |
-9.78 |
0.124117 |
251 -- 269 |
4 -- 23 |
putative S-transferase |
|
_____________250__________________270\n_____________|____________________|\n5'-UUA...AAAUC_________GC_________AAUAU...CGC-3'\n______________CGC_UGGCG__GCGUUCGCC\n______________|||_||:||__||:|||:||\n______________GCG_ACUGC__CGUAAGUGG\n3'-UUU...GGGUA___A_____AA_________ACG-5'\n_____________|____________________|\n_____________24___________________3\n |
263 -- 269 |
4 -- 10 |
-26.6155 kcal/mol |
8.73321 kcal/mol |
8.10973 kcal/mol |
250 270@LB@ | |@LB@5'-UUA...AAAUC GC AAUAU...CGC-3'@LB@ CGC UGGCG GCGUUCGCC@LB@ ||| ||:|| ||:|||:||@LB@ GCG ACUGC CGUAAGUGG@LB@3'-UUU...GGGUA A AA ACG-5'@LB@ | |@LB@ 24 3@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -26.6155 kcal/mol@LB@Unfolding Energy - mRNA 8.73321 kcal/mol@LB@Unfolding Energy - sRNA 8.10973 kcal/mol@LB@@LB@Position - mRNA 251 -- 269@LB@Position - sRNA 4 -- 23@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 128 |
0.004569 |
0.1258 |
b3033 |
yqiB |
-9.35 |
0.155553 |
90 -- 130 |
43 -- 87 |
DUF1249 protein YqiB |
|
_____________89_____________________________________________131\n_____________|______________________________________________|\n5'-UGG...GCCGG_____________AUAC______GUA__________AAAUC_____CGCAG...GCG-3'\n______________GAA_CAG____GC____CAGUGG___GAAGAGGGGA_____GACAA\n______________|||_||:____||____||||::___:||:|:||:|_____|||||\n______________CUU_GUU____CG____GUCAUU___UUUUUUCCUU_____CUGUU\n3'-UUU...GCAUG___A___AACA__AUAC______AAG__________CAUU______AUACC...ACG-5'\n_____________|______________________________________________|\n_____________88_____________________________________________42\n |
114 -- 120 |
52 -- 58 |
-22.1335 kcal/mol |
7.07839 kcal/mol |
5.71172 kcal/mol |
89 131@LB@ | |@LB@5'-UGG...GCCGG AUAC GUA AAAUC CGCAG...GCG-3'@LB@ GAA CAG GC CAGUGG GAAGAGGGGA GACAA@LB@ ||| ||: || ||||:: :||:|:||:| |||||@LB@ CUU GUU CG GUCAUU UUUUUUCCUU CUGUU@LB@3'-UUU...GCAUG A AACA AUAC AAG CAUU AUACC...ACG-5'@LB@ | |@LB@ 88 42@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -22.1335 kcal/mol@LB@Unfolding Energy - mRNA 7.07839 kcal/mol@LB@Unfolding Energy - sRNA 5.71172 kcal/mol@LB@@LB@Position - mRNA 90 -- 130@LB@Position - sRNA 43 -- 87@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 196 |
0.008885 |
0.1548 |
b3052 |
hldE |
-13.36 |
0.014255 |
113 -- 160 |
38 -- 93 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________112______________________________________________________161\n_____________|________________________________________________________|\n5'-GCG...UGAAC_G________________________A___GGCUGGU______AAU__________UAUUA...CGC-3'\n______________U_GUGCGGG_CAA____GCUG_GCAG_AGU________GGAAG___GA_AGUAUGG\n______________|_||:||::_|||____|||:_||||_|:|________|||||___||_|:|||||\n______________A_CAUGCUU_GUU____CGAU_CGUC_UUA________CCUUC___CU_UUAUACC\n3'-UUU...GCCGC_G_______A___AACA____A____A___AGUUUUUU_____AUU__G_______UCGCG...ACG-5'\n_____________|________________________________________________________|\n_____________94_______________________________________________________37\n |
154 -- 160 |
38 -- 44 |
-32.7339 kcal/mol |
11.626 kcal/mol |
7.73696 kcal/mol |
112 161@LB@ | |@LB@5'-GCG...UGAAC G A GGCUGGU AAU UAUUA...CGC-3'@LB@ U GUGCGGG CAA GCUG GCAG AGU GGAAG GA AGUAUGG@LB@ | ||:||:: ||| |||: |||| |:| ||||| || |:|||||@LB@ A CAUGCUU GUU CGAU CGUC UUA CCUUC CU UUAUACC@LB@3'-UUU...GCCGC G A AACA A A AGUUUUUU AUU G UCGCG...ACG-5'@LB@ | |@LB@ 94 37@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -32.7339 kcal/mol@LB@Unfolding Energy - mRNA 11.626 kcal/mol@LB@Unfolding Energy - sRNA 7.73696 kcal/mol@LB@@LB@Position - mRNA 113 -- 160@LB@Position - sRNA 38 -- 93@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 136 |
0.005087 |
0.1318 |
b3057 |
bacA |
-11.47 |
0.047548 |
153 -- 174 |
49 -- 71 |
undecaprenyl pyrophosphate phosphatase |
|
_____________152_____________________175\n_____________|_______________________|\n5'-UUC...CAUAC_____________C___C_____CAUUU...UUG-3'\n______________GCAGUAGUUCGGA_AAG__GGUA\n______________||||||:|||::|_|||__:|||\n______________CGUCAUUAAGUUU_UUC__UCAU\n3'-UUU...CGAUA_____________U___CU____UCUGU...ACG-5'\n_____________|_______________________|\n_____________72______________________48\n |
156 -- 162 |
62 -- 68 |
-21.4579 kcal/mol |
5.97 kcal/mol |
4.02052 kcal/mol |
152 175@LB@ | |@LB@5'-UUC...CAUAC C C CAUUU...UUG-3'@LB@ GCAGUAGUUCGGA AAG GGUA@LB@ ||||||:|||::| ||| :|||@LB@ CGUCAUUAAGUUU UUC UCAU@LB@3'-UUU...CGAUA U CU UCUGU...ACG-5'@LB@ | |@LB@ 72 48@LB@@LB@@LB@Energy -11.47 kcal/mol@LB@Hybridization Energy -21.4579 kcal/mol@LB@Unfolding Energy - mRNA 5.97 kcal/mol@LB@Unfolding Energy - sRNA 4.02052 kcal/mol@LB@@LB@Position - mRNA 153 -- 174@LB@Position - sRNA 49 -- 71@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 165 |
0.006479 |
0.1377 |
b3132 |
kbaZ |
-14.08 |
0.008730 |
160 -- 208 |
44 -- 89 |
tagatose 6-phosphate aldolase 1 kbaZ subunit |
b2095 |
_____________159__________________________________________________209\n_____________|____________________________________________________|\n5'-CGC...ACAAA_____A_____AA_____C________CUGAACU_________A____A___UCUGA...CAA-3'\n______________ACGAA__GAUU____UAU_GCAGUAAU_______GGAGAGGAA_GUGA_ACA\n______________|||||__:|||____|||_||||||||_______::|:|||||_||:|_|||\n______________UGCUU__UUAA____AUA_CGUCAUUA_______UUUUUCCUU_CAUU_UGU\n3'-UUU...CAGCA_____AG____CACG____________AGU__________________C___UAUAC...ACG-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________43\n |
193 -- 199 |
52 -- 58 |
-26.7556 kcal/mol |
6.95106 kcal/mol |
5.72676 kcal/mol |
159 209@LB@ | |@LB@5'-CGC...ACAAA A AA C CUGAACU A A UCUGA...CAA-3'@LB@ ACGAA GAUU UAU GCAGUAAU GGAGAGGAA GUGA ACA@LB@ ||||| :||| ||| |||||||| ::|:||||| ||:| |||@LB@ UGCUU UUAA AUA CGUCAUUA UUUUUCCUU CAUU UGU@LB@3'-UUU...CAGCA AG CACG AGU C UAUAC...ACG-5'@LB@ | |@LB@ 90 43@LB@@LB@@LB@Energy -14.08 kcal/mol@LB@Hybridization Energy -26.7556 kcal/mol@LB@Unfolding Energy - mRNA 6.95106 kcal/mol@LB@Unfolding Energy - sRNA 5.72676 kcal/mol@LB@@LB@Position - mRNA 160 -- 208@LB@Position - sRNA 44 -- 89@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 181 |
0.007702 |
0.1499 |
b3145 |
yraK |
-8.82 |
0.202558 |
266 -- 280 |
35 -- 49 |
putative fimbrial-like adhesin protein |
b0533 b0941 |
_____________265_____________281\n_____________|_______________|\n5'-CGA...UCCUC____G__________CGACA...CGA-3'\n______________AGGA_GGUGUGGAGC\n______________|:||_::|:||||||\n______________UUCU_UUAUACCUCG\n3'-UUU...CUUCA____G__________CGUUG...ACG-5'\n_____________|_______________|\n_____________50______________34\n |
274 -- 280 |
35 -- 41 |
-19.5909 kcal/mol |
7.00879 kcal/mol |
3.74396 kcal/mol |
265 281@LB@ | |@LB@5'-CGA...UCCUC G CGACA...CGA-3'@LB@ AGGA GGUGUGGAGC@LB@ |:|| ::|:||||||@LB@ UUCU UUAUACCUCG@LB@3'-UUU...CUUCA G CGUUG...ACG-5'@LB@ | |@LB@ 50 34@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -19.5909 kcal/mol@LB@Unfolding Energy - mRNA 7.00879 kcal/mol@LB@Unfolding Energy - sRNA 3.74396 kcal/mol@LB@@LB@Position - mRNA 266 -- 280@LB@Position - sRNA 35 -- 49@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 113 |
0.00365 |
0.1131 |
b3154 |
yhbP |
-10.91 |
0.065979 |
249 -- 297 |
26 -- 85 |
UPF0306 family protein |
|
_____________248___________________________________________________________298\n_____________|_____________________________________________________________|\n5'-AAA...AUGUU____C___GUG_______C_____________________ACUC____U____U_______UUU-3'\n______________GUCA_UUG___UGUGCAG___________AGGAAG_GGGA_____UGG_GCGC_AAUGCCU\n______________:|||_|||___|:|||||___________||||||_::||_____|||_||||_||:|||:\n______________UAGU_AAC___AUACGUC___________UCCUUC_UUCU_____ACC_CGCG_UUGCGGG\n3'-UUU...AUGCU____U___ACG_______AUUAAGUUUUU______A____GUUAU___U____________UAGCG...ACG-5'\n_____________|_____________________________________________________________|\n_____________86____________________________________________________________25\n |
260 -- 266 |
68 -- 74 |
-42.816 kcal/mol |
18.2405 kcal/mol |
13.6657 kcal/mol |
248 298@LB@ | |@LB@5'-AAA...AUGUU C GUG C ACUC U U UUU-3'@LB@ GUCA UUG UGUGCAG AGGAAG GGGA UGG GCGC AAUGCCU@LB@ :||| ||| |:||||| |||||| ::|| ||| |||| ||:|||:@LB@ UAGU AAC AUACGUC UCCUUC UUCU ACC CGCG UUGCGGG@LB@3'-UUU...AUGCU U ACG AUUAAGUUUUU A GUUAU U UAGCG...ACG-5'@LB@ | |@LB@ 86 25@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -42.816 kcal/mol@LB@Unfolding Energy - mRNA 18.2405 kcal/mol@LB@Unfolding Energy - sRNA 13.6657 kcal/mol@LB@@LB@Position - mRNA 249 -- 297@LB@Position - sRNA 26 -- 85@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 108 |
0.003432 |
0.1114 |
b3159 |
yhbV |
-7.84 |
0.318675 |
148 -- 178 |
4 -- 39 |
U32 peptidase family protein |
|
_____________147___________________________________179\n_____________|_____________________________________|\n5'-GUG...CCGAA__CA_____A_______U_____________A_____GUAAA...AUC-3'\n______________GG__CGCAA___CCA_C_CUUGGCG___CAU_UCACC\n______________||__|||||___|||_|_||||:||___|||_|||||\n______________CC__GCGUU___GGU_G_GAACUGC___GUA_AGUGG\n3'-UUU...UUAUA__UC_____GCG___A_C_______AAC_________ACG-5'\n_____________|_____________________________________|\n_____________40____________________________________3\n |
163 -- 169 |
15 -- 21 |
-29.1995 kcal/mol |
6.07879 kcal/mol |
15.29 kcal/mol |
147 179@LB@ | |@LB@5'-GUG...CCGAA CA A U A GUAAA...AUC-3'@LB@ GG CGCAA CCA C CUUGGCG CAU UCACC@LB@ || ||||| ||| | ||||:|| ||| |||||@LB@ CC GCGUU GGU G GAACUGC GUA AGUGG@LB@3'-UUU...UUAUA UC GCG A C AAC ACG-5'@LB@ | |@LB@ 40 3@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -29.1995 kcal/mol@LB@Unfolding Energy - mRNA 6.07879 kcal/mol@LB@Unfolding Energy - sRNA 15.29 kcal/mol@LB@@LB@Position - mRNA 148 -- 178@LB@Position - sRNA 4 -- 39@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 190 |
0.008377 |
0.1548 |
b3167 |
rbfA |
-7.61 |
0.351010 |
14 -- 35 |
19 -- 38 |
30s ribosome binding factor |
|
_____________13_____________________36\n_____________|______________________|\n5'-AUU...UCAUC___A_C______A_________AAGGU...GCA-3'\n______________GAG_U_CAACGU_CCAUUGCUU\n______________|||_:_|||||:_||||:||||\n______________CUC_G_GUUGCG_GGUAGCGAA\n3'-UUU...UAUAC_____C________________CUGCA...ACG-5'\n_____________|______________________|\n_____________39_____________________18\n |
29 -- 35 |
19 -- 25 |
-22.6036 kcal/mol |
2.81921 kcal/mol |
12.1801 kcal/mol |
13 36@LB@ | |@LB@5'-AUU...UCAUC A C A AAGGU...GCA-3'@LB@ GAG U CAACGU CCAUUGCUU@LB@ ||| : |||||: ||||:||||@LB@ CUC G GUUGCG GGUAGCGAA@LB@3'-UUU...UAUAC C CUGCA...ACG-5'@LB@ | |@LB@ 39 18@LB@@LB@@LB@Energy -7.61 kcal/mol@LB@Hybridization Energy -22.6036 kcal/mol@LB@Unfolding Energy - mRNA 2.81921 kcal/mol@LB@Unfolding Energy - sRNA 12.1801 kcal/mol@LB@@LB@Position - mRNA 14 -- 35@LB@Position - sRNA 19 -- 38@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 19 -- 25@LB@ |
