| 137 |
0.005185 |
0.1333 |
b2256 |
arnD |
-10.61 |
0.078275 |
62 -- 106 |
20 -- 56 |
undecaprenyl phosphate-alpha-L-ara4FN deformylase |
|
_____________61____________________________________________107\n_____________|_____________________________________________|\n5'-UUC...AUAUC____C____A___UC___AACC____AUCC__________C____GCCUG...AGG-3'\n______________AGGA_GUAG_GCA__GUA____GAGC____GCAAUGCCCA_CGCU\n______________||||_|||:_:||__:||____||||____||||:|||||_||||\n______________UCCU_CAUU_UGU__UAU____CUCG____CGUUGCGGGU_GCGA\n3'-UUU...UUUUU____U____C________AC____________________A____ACUGC...ACG-5'\n_____________|_____________________________________________|\n_____________57____________________________________________19\n |
95 -- 101 |
25 -- 31 |
-37.0072 kcal/mol |
12.6417 kcal/mol |
13.7538 kcal/mol |
61 107@LB@ | |@LB@5'-UUC...AUAUC C A UC AACC AUCC C GCCUG...AGG-3'@LB@ AGGA GUAG GCA GUA GAGC GCAAUGCCCA CGCU@LB@ |||| |||: :|| :|| |||| ||||:||||| ||||@LB@ UCCU CAUU UGU UAU CUCG CGUUGCGGGU GCGA@LB@3'-UUU...UUUUU U C AC A ACUGC...ACG-5'@LB@ | |@LB@ 57 19@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -37.0072 kcal/mol@LB@Unfolding Energy - mRNA 12.6417 kcal/mol@LB@Unfolding Energy - sRNA 13.7538 kcal/mol@LB@@LB@Position - mRNA 62 -- 106@LB@Position - sRNA 20 -- 56@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 46 |
0.0004731 |
0.03623 |
b2279 |
nuoK |
-14.07 |
0.008802 |
136 -- 157 |
69 -- 92 |
NADH:ubiquinone oxidoreductase membrane subunit K |
|
_____________135______________________158\n_____________|________________________|\n5'-GGU...AAGAG_________G__________A___AUCGU...UUG-3'\n______________CGUGCGGGU_AA__GUGCUG_GCA\n______________|||:||::|_||__|||||:_|||\n______________GCAUGCUUA_UU__CACGAU_CGU\n3'-UUU...CCGCA_________G__AA______A___CAUUA...ACG-5'\n_____________|________________________|\n_____________93_______________________68\n |
138 -- 144 |
84 -- 90 |
-25.4547 kcal/mol |
6.72556 kcal/mol |
4.66371 kcal/mol |
135 158@LB@ | |@LB@5'-GGU...AAGAG G A AUCGU...UUG-3'@LB@ CGUGCGGGU AA GUGCUG GCA@LB@ |||:||::| || |||||: |||@LB@ GCAUGCUUA UU CACGAU CGU@LB@3'-UUU...CCGCA G AA A CAUUA...ACG-5'@LB@ | |@LB@ 93 68@LB@@LB@@LB@Energy -14.07 kcal/mol@LB@Hybridization Energy -25.4547 kcal/mol@LB@Unfolding Energy - mRNA 6.72556 kcal/mol@LB@Unfolding Energy - sRNA 4.66371 kcal/mol@LB@@LB@Position - mRNA 136 -- 157@LB@Position - sRNA 69 -- 92@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 16 |
3.593e-05 |
0.007912 |
b2294 |
yfbU |
-10.97 |
0.063921 |
276 -- 297 |
1 -- 22 |
UPF0304 family protein |
|
_____________275____________________298\n_____________|______________________|\n5'-GCA...CAAAU___GA_____ACCG________AAA-3'\n______________GCU__ACGUU____UCGCCUGC\n______________|||__|||||____||:|||||\n______________CGA__UGCAA____AGUGGACG\n3'-UUU...GGUAG___AC_____CGUA________-5'\n_____________|_____________________|\n_____________23____________________1\n |
291 -- 297 |
1 -- 7 |
-25.1893 kcal/mol |
6.12655 kcal/mol |
8.09964 kcal/mol |
275 298@LB@ | |@LB@5'-GCA...CAAAU GA ACCG AAA-3'@LB@ GCU ACGUU UCGCCUGC@LB@ ||| ||||| ||:|||||@LB@ CGA UGCAA AGUGGACG@LB@3'-UUU...GGUAG AC CGUA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.97 kcal/mol@LB@Hybridization Energy -25.1893 kcal/mol@LB@Unfolding Energy - mRNA 6.12655 kcal/mol@LB@Unfolding Energy - sRNA 8.09964 kcal/mol@LB@@LB@Position - mRNA 276 -- 297@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 72 |
0.001523 |
0.07451 |
b2296 |
ackA |
-11.55 |
0.045253 |
141 -- 168 |
13 -- 36 |
acetate kinase A and propionate kinase 2 |
|
_____________140__________________________169\n_____________|____________________________|\n5'-AUU...AUCAU____U____U____G___CCC_______UUUUU...UAG-3'\n______________GCGC_ACGC_CUAU_GCU___UGACGUU\n______________||||_||||_|:||_|||___|||||||\n______________CGCG_UGCG_GGUA_CGA___ACUGCAA\n3'-UUU...UACCU____U_________G_____________CGUAA...ACG-5'\n_____________|____________________________|\n_____________37___________________________12\n |
162 -- 168 |
13 -- 19 |
-30.8127 kcal/mol |
7.01729 kcal/mol |
12.2493 kcal/mol |
140 169@LB@ | |@LB@5'-AUU...AUCAU U U G CCC UUUUU...UAG-3'@LB@ GCGC ACGC CUAU GCU UGACGUU@LB@ |||| |||| |:|| ||| |||||||@LB@ CGCG UGCG GGUA CGA ACUGCAA@LB@3'-UUU...UACCU U G CGUAA...ACG-5'@LB@ | |@LB@ 37 12@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -30.8127 kcal/mol@LB@Unfolding Energy - mRNA 7.01729 kcal/mol@LB@Unfolding Energy - sRNA 12.2493 kcal/mol@LB@@LB@Position - mRNA 141 -- 168@LB@Position - sRNA 13 -- 36@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 127 |
0.004567 |
0.1258 |
b2320 |
pdxB |
-8.62 |
0.223386 |
291 -- 299 |
20 -- 28 |
erythronate-4-phosphate dehydrogenase |
|
_____________290_______300\n_____________|_________|\n5'-ACG...CAAUC_________C-3'\n______________CCCGUCGCU\n______________|||:|||||\n______________GGGUAGCGA\n3'-UUU...GUUGC_________ACUGC...ACG-5'\n_____________|_________|\n_____________29________19\n |
293 -- 299 |
20 -- 26 |
-15.7186 kcal/mol |
1.54056 kcal/mol |
5.56153 kcal/mol |
290 300@LB@ | |@LB@5'-ACG...CAAUC C-3'@LB@ CCCGUCGCU@LB@ |||:|||||@LB@ GGGUAGCGA@LB@3'-UUU...GUUGC ACUGC...ACG-5'@LB@ | |@LB@ 29 19@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -15.7186 kcal/mol@LB@Unfolding Energy - mRNA 1.54056 kcal/mol@LB@Unfolding Energy - sRNA 5.56153 kcal/mol@LB@@LB@Position - mRNA 291 -- 299@LB@Position - sRNA 20 -- 28@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 77 |
0.00185 |
0.08273 |
b2325 |
yfcL |
-11.04 |
0.061434 |
190 -- 213 |
35 -- 57 |
uncharacterized protein |
|
_____________189______________________214\n_____________|________________________|\n5'-AAC...ACAAU______AG________CGC_____UUGAA...GCC-3'\n______________GAGGAA__AAGAUGAU___GGAGU\n______________:|||||__||||::||___||||:\n______________UUCCUU__UUCUGUUA___CCUCG\n3'-UUU...GUUUU______CA________UA______CGUUG...ACG-5'\n_____________|________________________|\n_____________58_______________________34\n |
199 -- 205 |
42 -- 48 |
-19.5886 kcal/mol |
4.3321 kcal/mol |
4.1846 kcal/mol |
189 214@LB@ | |@LB@5'-AAC...ACAAU AG CGC UUGAA...GCC-3'@LB@ GAGGAA AAGAUGAU GGAGU@LB@ :||||| ||||::|| ||||:@LB@ UUCCUU UUCUGUUA CCUCG@LB@3'-UUU...GUUUU CA UA CGUUG...ACG-5'@LB@ | |@LB@ 58 34@LB@@LB@@LB@Energy -11.04 kcal/mol@LB@Hybridization Energy -19.5886 kcal/mol@LB@Unfolding Energy - mRNA 4.3321 kcal/mol@LB@Unfolding Energy - sRNA 4.1846 kcal/mol@LB@@LB@Position - mRNA 190 -- 213@LB@Position - sRNA 35 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 48 |
0.0005049 |
0.03706 |
b2331 |
smrB |
-12.55 |
0.024312 |
152 -- 200 |
43 -- 92 |
putative DNA endonuclease |
|
_____________151__________________________________________________201\n_____________|____________________________________________________|\n5'-UCA...GAUUG__C__________GUAAAC_______GAAAA_______UA___AC_______AUGAA...GAC-3'\n______________CG_UACGAGUCGG________UGUAG_____UUAGAAA__GAG___AGAUAA\n______________||_|||||:||::________||:||_____|:|:|||__||:___|||:||\n______________GC_AUGCUUAGUU________ACGUC_____AGUUUUU__CUU___UCUGUU\n3'-UUU...CCGCA_____________AACACGAU_____AUUA________UC___CAU______AUACC...ACG-5'\n_____________|____________________________________________________|\n_____________93___________________________________________________42\n |
158 -- 164 |
81 -- 87 |
-25.319 kcal/mol |
6.91043 kcal/mol |
5.86211 kcal/mol |
151 201@LB@ | |@LB@5'-UCA...GAUUG C GUAAAC GAAAA UA AC AUGAA...GAC-3'@LB@ CG UACGAGUCGG UGUAG UUAGAAA GAG AGAUAA@LB@ || |||||:||:: ||:|| |:|:||| ||: |||:||@LB@ GC AUGCUUAGUU ACGUC AGUUUUU CUU UCUGUU@LB@3'-UUU...CCGCA AACACGAU AUUA UC CAU AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -25.319 kcal/mol@LB@Unfolding Energy - mRNA 6.91043 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 152 -- 200@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 157 |
0.006139 |
0.1377 |
b2347 |
yfdC |
-9.29 |
0.160067 |
171 -- 205 |
37 -- 76 |
putative inner membrane protein |
|
_____________170________________________________________206\n_____________|__________________________________________|\n5'-GCA...CUUUA_____AC___C_______________________C_______CAACG...UCC-3'\n______________GCUAU__GUG_UAAUUCAAGA___GAAG__AGAC___AUGGA\n______________|||||__|::_||||||||:|___||||__||||___|||||\n______________CGAUA__CGU_AUUAAGUUUU___CUUC__UCUG___UACCU\n3'-UUU...UAACA__________C__________UUC____AU____UUA_____CGCGU...ACG-5'\n_____________|__________________________________________|\n_____________77_________________________________________36\n |
185 -- 191 |
58 -- 64 |
-24.5838 kcal/mol |
7.63937 kcal/mol |
7.64142 kcal/mol |
170 206@LB@ | |@LB@5'-GCA...CUUUA AC C C CAACG...UCC-3'@LB@ GCUAU GUG UAAUUCAAGA GAAG AGAC AUGGA@LB@ ||||| |:: ||||||||:| |||| |||| |||||@LB@ CGAUA CGU AUUAAGUUUU CUUC UCUG UACCU@LB@3'-UUU...UAACA C UUC AU UUA CGCGU...ACG-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -24.5838 kcal/mol@LB@Unfolding Energy - mRNA 7.63937 kcal/mol@LB@Unfolding Energy - sRNA 7.64142 kcal/mol@LB@@LB@Position - mRNA 171 -- 205@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 192 |
0.008587 |
0.1548 |
b2366 |
dsdA |
-12.64 |
0.022913 |
191 -- 232 |
21 -- 49 |
D-serine dehydratase |
|
_____________190________________________________________233\n_____________|__________________________________________|\n5'-AUU...GCAAA______UAC______AAA___UAAAAUGAACU__________CCAGU...CCU-3'\n______________GAGACG___UAUGGA___CGC___________CGCUCAUCGC\n______________:||||:___||||||___|||___________|||:||||||\n______________UUCUGU___AUACCU___GCG___________GCGGGUAGCG\n3'-UUU...CUUCA______U________C_____UU___________________AACUG...ACG-5'\n_____________|__________________________________________|\n_____________50_________________________________________20\n |
226 -- 232 |
21 -- 27 |
-32.1247 kcal/mol |
5.89431 kcal/mol |
13.5917 kcal/mol |
190 233@LB@ | |@LB@5'-AUU...GCAAA UAC AAA UAAAAUGAACU CCAGU...CCU-3'@LB@ GAGACG UAUGGA CGC CGCUCAUCGC@LB@ :||||: |||||| ||| |||:||||||@LB@ UUCUGU AUACCU GCG GCGGGUAGCG@LB@3'-UUU...CUUCA U C UU AACUG...ACG-5'@LB@ | |@LB@ 50 20@LB@@LB@@LB@Energy -12.64 kcal/mol@LB@Hybridization Energy -32.1247 kcal/mol@LB@Unfolding Energy - mRNA 5.89431 kcal/mol@LB@Unfolding Energy - sRNA 13.5917 kcal/mol@LB@@LB@Position - mRNA 191 -- 232@LB@Position - sRNA 21 -- 49@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 49 |
0.0005476 |
0.03937 |
b2432 |
yfeY |
-8.84 |
0.200409 |
189 -- 199 |
48 -- 58 |
RpoE-regulated lipoprotein |
|
_____________188_________200\n_____________|___________|\n5'-GCU...UAACC___________CAUGA...ACU-3'\n______________AAAGGAAGUGA\n______________|||||||||:|\n______________UUUCCUUCAUU\n3'-UUU...AGUUU___________CUGUU...ACG-5'\n_____________|___________|\n_____________59__________47\n |
193 -- 199 |
48 -- 54 |
-12.8959 kcal/mol |
3.31176 kcal/mol |
0.745549 kcal/mol |
188 200@LB@ | |@LB@5'-GCU...UAACC CAUGA...ACU-3'@LB@ AAAGGAAGUGA@LB@ |||||||||:|@LB@ UUUCCUUCAUU@LB@3'-UUU...AGUUU CUGUU...ACG-5'@LB@ | |@LB@ 59 47@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -12.8959 kcal/mol@LB@Unfolding Energy - mRNA 3.31176 kcal/mol@LB@Unfolding Energy - sRNA 0.745549 kcal/mol@LB@@LB@Position - mRNA 189 -- 199@LB@Position - sRNA 48 -- 58@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 48 -- 54@LB@ |
