132 |
0.004965 |
0.1313 |
b0876 |
ybjD |
-10.35 |
0.091015 |
20 -- 74 |
49 -- 93 |
putative OLD family ATP-dependent endonuclease; DUF2813 family protein |
|
_____________19______________________________________________________75\n_____________|_______________________________________________________|\n5'-CGU...AUUUA__A___U_____U___AUUU_____UUUU_____ACUUA____C___________UAACG...GGG-3'\n______________UC_UGC_AAUUA_UUG____UGUUG____UGCAG_____UCAG_AAGAGGGAGUA\n______________||_|:|_|||:|_|||____||:|:____|||||_____|||:_||:|||:||||\n______________AG_AUG_UUAGU_AAC____ACGAU____ACGUC_____AGUU_UUUUCCUUCAU\n3'-UUU...GCCGC__C___C_____U_____________________AUUA_________________UCUGU...ACG-5'\n_____________|_______________________________________________________|\n_____________94______________________________________________________48\n |
68 -- 74 |
49 -- 55 |
-28.5607 kcal/mol |
13.348 kcal/mol |
4.86987 kcal/mol |
19 75@LB@ | |@LB@5'-CGU...AUUUA A U U AUUU UUUU ACUUA C UAACG...GGG-3'@LB@ UC UGC AAUUA UUG UGUUG UGCAG UCAG AAGAGGGAGUA@LB@ || |:| |||:| ||| ||:|: ||||| |||: ||:|||:||||@LB@ AG AUG UUAGU AAC ACGAU ACGUC AGUU UUUUCCUUCAU@LB@3'-UUU...GCCGC C C U AUUA UCUGU...ACG-5'@LB@ | |@LB@ 94 48@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -28.5607 kcal/mol@LB@Unfolding Energy - mRNA 13.348 kcal/mol@LB@Unfolding Energy - sRNA 4.86987 kcal/mol@LB@@LB@Position - mRNA 20 -- 74@LB@Position - sRNA 49 -- 93@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 49 -- 55@LB@ |
71 |
0.001416 |
0.07026 |
b0880 |
cspD |
-7.58 |
0.355655 |
51 -- 57 |
1 -- 7 |
inhibitor of DNA replication cold shock protein homolog |
|
_____________50______58\n_____________|_______|\n5'-AUC...AUUCA_______CCCUU...CCA-3'\n______________UACCUGC\n______________:||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
51 -- 57 |
1 -- 7 |
-10.3464 kcal/mol |
0.429757 kcal/mol |
2.34039 kcal/mol |
50 58@LB@ | |@LB@5'-AUC...AUUCA CCCUU...CCA-3'@LB@ UACCUGC@LB@ :||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -7.58 kcal/mol@LB@Hybridization Energy -10.3464 kcal/mol@LB@Unfolding Energy - mRNA 0.429757 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 51 -- 57@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 1 -- 7@LB@ |
4 |
1.28e-06 |
0.001128 |
b0884 |
infA |
-17.67 |
0.000535 |
178 -- 264 |
1 -- 71 |
translation initiation factor IF-1 |
|
_____________177_______________________________________________________________________________________265\n_____________|_________________________________________________________________________________________|\n5'-UUU...UUACG________ACCCC______UUAGAUGGCCAA_____________U__AA_____G__A___________AA______CUAA____A___UCCGC...CUG-3'\n______________GUAGUGAU_____AGAGGA____________AG_AAGACAAUAU_GA__UGCAA_GU_CCGUU_CUUGA__CGUUGC____UACC_UGU\n______________|:|||:||_____|:||||____________||_||||||||||_||__:||||_|:_||:|:_|||||__||||||____:|||_||:\n______________CGUCAUUA_____UUUCCU____________UC_UUCUGUUAUA_CU__GCGUU_CG_GGUAG_GAACU__GCAACG____GUGG_ACG\n3'-UUU...CGAUA________AGUUU____________________A__________C__C______G________C_____________UAA_________-5'\n_____________|________________________________________________________________________________________|\n_____________72_______________________________________________________________________________________1\n |
214 -- 220 |
40 -- 46 |
-55.7119 kcal/mol |
17.4656 kcal/mol |
20.5786 kcal/mol |
177 265@LB@ | |@LB@5'-UUU...UUACG ACCCC UUAGAUGGCCAA U AA G A AA CUAA A UCCGC...CUG-3'@LB@ GUAGUGAU AGAGGA AG AAGACAAUAU GA UGCAA GU CCGUU CUUGA CGUUGC UACC UGU@LB@ |:|||:|| |:|||| || |||||||||| || :|||| |: ||:|: ||||| |||||| :||| ||:@LB@ CGUCAUUA UUUCCU UC UUCUGUUAUA CU GCGUU CG GGUAG GAACU GCAACG GUGG ACG@LB@3'-UUU...CGAUA AGUUU A C C G C UAA -5'@LB@ | |@LB@ 72 1@LB@@LB@@LB@Energy -17.67 kcal/mol@LB@Hybridization Energy -55.7119 kcal/mol@LB@Unfolding Energy - mRNA 17.4656 kcal/mol@LB@Unfolding Energy - sRNA 20.5786 kcal/mol@LB@@LB@Position - mRNA 178 -- 264@LB@Position - sRNA 1 -- 71@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 40 -- 46@LB@ |
150 |
0.005897 |
0.1368 |
b0887 |
cydD |
-10.72 |
0.073556 |
183 -- 190 |
1 -- 8 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________182______191\n_____________|________|\n5'-AUU...AUAAC________UAAGC...UGA-3'\n______________UCACCUGC\n______________||||||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
184 -- 190 |
1 -- 7 |
-15.001 kcal/mol |
1.91816 kcal/mol |
2.36381 kcal/mol |
182 191@LB@ | |@LB@5'-AUU...AUAAC UAAGC...UGA-3'@LB@ UCACCUGC@LB@ ||||||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -15.001 kcal/mol@LB@Unfolding Energy - mRNA 1.91816 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 183 -- 190@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
1 |
1.057e-08 |
3.724e-05 |
b0889 |
lrp |
-13.58 |
0.012310 |
166 -- 227 |
21 -- 70 |
leucine-responsive global transcriptional regulator |
|
_____________165_______________________________________________________________228\n_____________|_________________________________________________________________|\n5'-GUG...UCAGA___GAG____________AUAC__A_________AUAA___U__AUA___AGAA________G__AAAGA...AGC-3'\n______________CAG_____UAGGGAAGGA____AG_GAGACAAUA____UGG_AG___GCA____GCGCCC_U_GC\n______________|||_____:|:::|||||____||_:||||||||____|||_||___|||____:|||||_|_||\n______________GUC_____GUUUUUUCCU____UC_UUCUGUUAU____ACC_UC___CGU____UGCGGG_A_CG\n3'-UUU...GAUAC___AUUAA________________A___________________G_______________U_G__AACUG...ACG-5'\n_____________|_________________________________________________________________|\n_____________71________________________________________________________________20\n |
191 -- 197 |
41 -- 47 |
-39.3483 kcal/mol |
8.89245 kcal/mol |
16.878 kcal/mol |
165 228@LB@ | |@LB@5'-GUG...UCAGA GAG AUAC A AUAA U AUA AGAA G AAAGA...AGC-3'@LB@ CAG UAGGGAAGGA AG GAGACAAUA UGG AG GCA GCGCCC U GC@LB@ ||| :|:::||||| || :|||||||| ||| || ||| :||||| | ||@LB@ GUC GUUUUUUCCU UC UUCUGUUAU ACC UC CGU UGCGGG A CG@LB@3'-UUU...GAUAC AUUAA A G U G AACUG...ACG-5'@LB@ | |@LB@ 71 20@LB@@LB@@LB@Energy -13.58 kcal/mol@LB@Hybridization Energy -39.3483 kcal/mol@LB@Unfolding Energy - mRNA 8.89245 kcal/mol@LB@Unfolding Energy - sRNA 16.878 kcal/mol@LB@@LB@Position - mRNA 166 -- 227@LB@Position - sRNA 21 -- 70@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 41 -- 47@LB@ |
85 |
0.002164 |
0.08969 |
b0910 |
cmk |
-11.54 |
0.045559 |
249 -- 300 |
1 -- 56 |
cytidylate kinase |
|
_____________248________________________________________________________300\n_____________|__________________________________________________________|\n5'-CCG...GUGCA_____________CCUU_________G______G__GGAA________AUGG_______-3'\n______________GGGA___AAGGCA_______GUGUAA_G_CUAU_GC____GCGUUGCA____CAUCUGC\n______________:|||___|||:||_______|:|:||_|_|:||_||____:|||||||____||:||||\n______________UCCU___UUCUGU_______CGCGUU_C_GGUA_CG____UGCAACGU____GUGGACG\n3'-UUU...UUUUU____UCA______UAUACCU______G_G____G__AAC_________AA_________-5'\n_____________|__________________________________________________________|\n_____________57_________________________________________________________1\n |
294 -- 300 |
1 -- 7 |
-44.7718 kcal/mol |
16.3932 kcal/mol |
16.8439 kcal/mol |
248 300@LB@ | |@LB@5'-CCG...GUGCA CCUU G G GGAA AUGG -3'@LB@ GGGA AAGGCA GUGUAA G CUAU GC GCGUUGCA CAUCUGC@LB@ :||| |||:|| |:|:|| | |:|| || :||||||| ||:||||@LB@ UCCU UUCUGU CGCGUU C GGUA CG UGCAACGU GUGGACG@LB@3'-UUU...UUUUU UCA UAUACCU G G G AAC AA -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -11.54 kcal/mol@LB@Hybridization Energy -44.7718 kcal/mol@LB@Unfolding Energy - mRNA 16.3932 kcal/mol@LB@Unfolding Energy - sRNA 16.8439 kcal/mol@LB@@LB@Position - mRNA 249 -- 300@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 1 -- 7@LB@ |
135 |
0.00505 |
0.1318 |
b0918 |
kdsB |
-10.75 |
0.072320 |
21 -- 54 |
1 -- 42 |
3-deoxy-manno-octulosonate cytidylyltransferase |
|
_____________20_________________________________________55\n_____________|__________________________________________|\n5'-CCC...GGAAC______U____U______________AAU_____________CCGGU...UUC-3'\n______________UAUGGA___CA_CGUC___UGCUUGA_____CAUU_GCCUGC\n______________||||||___||_||:|___:||||||_____||||_:|||||\n______________AUACCU___GU_GCGG___GCGAACU_____GUAA_UGGACG\n3'-UUU...CUGUU______CGC__U____GUA_______GCAAC____G______-5'\n_____________|_________________________________________|\n_____________43________________________________________1\n |
35 -- 41 |
17 -- 23 |
-30.6746 kcal/mol |
4.6323 kcal/mol |
15.293 kcal/mol |
20 55@LB@ | |@LB@5'-CCC...GGAAC U U AAU CCGGU...UUC-3'@LB@ UAUGGA CA CGUC UGCUUGA CAUU GCCUGC@LB@ |||||| || ||:| :|||||| |||| :|||||@LB@ AUACCU GU GCGG GCGAACU GUAA UGGACG@LB@3'-UUU...CUGUU CGC U GUA GCAAC G -5'@LB@ | |@LB@ 43 1@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -30.6746 kcal/mol@LB@Unfolding Energy - mRNA 4.6323 kcal/mol@LB@Unfolding Energy - sRNA 15.293 kcal/mol@LB@@LB@Position - mRNA 21 -- 54@LB@Position - sRNA 1 -- 42@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 17 -- 23@LB@ |
88 |
0.002437 |
0.09689 |
b0940 |
elfC |
-8.14 |
0.278491 |
92 -- 131 |
23 -- 58 |
putative outer membrane fimbrial subunit export usher protein |
b3144 b0532 b4317 |
_____________91_________________________________________132\n_____________|__________________________________________|\n5'-AUU...CUGCC________CCAAA_____GC___________AUCGAA_____AAUGA...CAC-3'\n______________AAAGGGGG______AAUA___AGCGUAACGU______CCAUC\n______________|||||::|______||||___||||:||||:______|||||\n______________UUUCCUUC______UUAU___UCGCGUUGCG______GGUAG\n3'-UUU...AGUUU________AUUCUG____ACC_____________________CGAAC...ACG-5'\n_____________|__________________________________________|\n_____________59_________________________________________22\n |
112 -- 118 |
30 -- 36 |
-29.3003 kcal/mol |
7.72593 kcal/mol |
13.4354 kcal/mol |
91 132@LB@ | |@LB@5'-AUU...CUGCC CCAAA GC AUCGAA AAUGA...CAC-3'@LB@ AAAGGGGG AAUA AGCGUAACGU CCAUC@LB@ |||||::| |||| ||||:||||: |||||@LB@ UUUCCUUC UUAU UCGCGUUGCG GGUAG@LB@3'-UUU...AGUUU AUUCUG ACC CGAAC...ACG-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -8.14 kcal/mol@LB@Hybridization Energy -29.3003 kcal/mol@LB@Unfolding Energy - mRNA 7.72593 kcal/mol@LB@Unfolding Energy - sRNA 13.4354 kcal/mol@LB@@LB@Position - mRNA 92 -- 131@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 30 -- 36@LB@ |
125 |
0.004538 |
0.1258 |
b0951 |
pqiB |
-12.90 |
0.019327 |
185 -- 205 |
37 -- 57 |
paraquat-inducible SoxRS-regulated MCE domain protein |
|
_____________184___________________206\n_____________|_____________________|\n5'-CUG...AGCAU______UCCU___________AUCUA...UUC-3'\n______________GAGGAG____GACAGUAUGGA\n______________:||||:____||||:||||||\n______________UUCCUU____CUGUUAUACCU\n3'-UUU...GUUUU______CAUU___________CGCGU...ACG-5'\n_____________|_____________________|\n_____________58____________________36\n |
199 -- 205 |
37 -- 43 |
-21.8788 kcal/mol |
5.24969 kcal/mol |
3.68958 kcal/mol |
184 206@LB@ | |@LB@5'-CUG...AGCAU UCCU AUCUA...UUC-3'@LB@ GAGGAG GACAGUAUGGA@LB@ :||||: ||||:||||||@LB@ UUCCUU CUGUUAUACCU@LB@3'-UUU...GUUUU CAUU CGCGU...ACG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -21.8788 kcal/mol@LB@Unfolding Energy - mRNA 5.24969 kcal/mol@LB@Unfolding Energy - sRNA 3.68958 kcal/mol@LB@@LB@Position - mRNA 185 -- 205@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 37 -- 43@LB@ |
84 |
0.001972 |
0.08273 |
b0968 |
yccX |
-8.34 |
0.253881 |
183 -- 226 |
2 -- 49 |
weak acylphosphatase |
|
_____________182_________________________________________________227\n_____________|___________________________________________________|\n5'-GGC...CAUUA_______GGA_____A________G_AA__C___________AA_______GGUUU...CCG-3'\n______________AGGAUAA____GAGC_GCAAUGUC_A__GU_______UGCAU__UUGCCUG\n______________|:||:||____||||_||||:|:|_|__|:_______|||||__|::||||\n______________UUCUGUU____CUCG_CGUUGCGG_U__CG_______ACGUA__AGUGGAC\n3'-UUU...CUUCA_______AUAC_____________G_AG__AACUGCA______________G-5'\n_____________|___________________________________________________|\n_____________50__________________________________________________1\n |
220 -- 226 |
2 -- 8 |
-35.2137 kcal/mol |
10.0937 kcal/mol |
16.7804 kcal/mol |
182 227@LB@ | |@LB@5'-GGC...CAUUA GGA A G AA C AA GGUUU...CCG-3'@LB@ AGGAUAA GAGC GCAAUGUC A GU UGCAU UUGCCUG@LB@ |:||:|| |||| ||||:|:| | |: ||||| |::||||@LB@ UUCUGUU CUCG CGUUGCGG U CG ACGUA AGUGGAC@LB@3'-UUU...CUUCA AUAC G AG AACUGCA G-5'@LB@ | |@LB@ 50 1@LB@@LB@@LB@Energy -8.34 kcal/mol@LB@Hybridization Energy -35.2137 kcal/mol@LB@Unfolding Energy - mRNA 10.0937 kcal/mol@LB@Unfolding Energy - sRNA 16.7804 kcal/mol@LB@@LB@Position - mRNA 183 -- 226@LB@Position - sRNA 2 -- 49@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 2 -- 8@LB@ |