| 57 |
0.0009345 |
0.05776 |
b3755 |
yieP |
-11.62 |
0.043293 |
183 -- 203 |
41 -- 61 |
putative transcriptional regulator |
|
_____________182____________________204\n_____________|______________________|\n5'-UUC...AAAAA___________A__________CCUUU...CCG-3'\n______________GAAAAAGGAAG_UAAG_UAAUG\n______________:||||||||||_||||_:|||:\n______________UUUUUUCCUUC_AUUC_GUUAU\n3'-UUU...UUAAG________________U_____ACCUC...ACG-5'\n_____________|______________________|\n_____________62_____________________40\n |
187 -- 193 |
51 -- 57 |
-16.3745 kcal/mol |
2.38082 kcal/mol |
2.36907 kcal/mol |
182 204@LB@ | |@LB@5'-UUC...AAAAA A CCUUU...CCG-3'@LB@ GAAAAAGGAAG UAAG UAAUG@LB@ :|||||||||| |||| :|||:@LB@ UUUUUUCCUUC AUUC GUUAU@LB@3'-UUU...UUAAG U ACCUC...ACG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -16.3745 kcal/mol@LB@Unfolding Energy - mRNA 2.38082 kcal/mol@LB@Unfolding Energy - sRNA 2.36907 kcal/mol@LB@@LB@Position - mRNA 183 -- 203@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 188 |
0.008258 |
0.1545 |
b3803 |
hemX |
-8.31 |
0.258101 |
280 -- 297 |
46 -- 62 |
putative uroporphyrinogen III methyltransferase |
|
_____________279________________298\n_____________|__________________|\n5'-AAA...CGCAA_______AAA________ACA-3'\n______________CAGAAAA___GAGUAAGA\n______________||:||||___:|||||||\n______________GUUUUUU___UUCAUUCU\n3'-UUU...AUUAA_______CC_________GUUAU...ACG-5'\n_____________|__________________|\n_____________63_________________45\n |
291 -- 297 |
46 -- 52 |
-11.8819 kcal/mol |
0.215347 kcal/mol |
3.36135 kcal/mol |
279 298@LB@ | |@LB@5'-AAA...CGCAA AAA ACA-3'@LB@ CAGAAAA GAGUAAGA@LB@ ||:|||| :|||||||@LB@ GUUUUUU UUCAUUCU@LB@3'-UUU...AUUAA CC GUUAU...ACG-5'@LB@ | |@LB@ 63 45@LB@@LB@@LB@Energy -8.31 kcal/mol@LB@Hybridization Energy -11.8819 kcal/mol@LB@Unfolding Energy - mRNA 0.215347 kcal/mol@LB@Unfolding Energy - sRNA 3.36135 kcal/mol@LB@@LB@Position - mRNA 280 -- 297@LB@Position - sRNA 46 -- 62@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 58 |
0.0009751 |
0.05816 |
b3809 |
dapF |
-9.70 |
0.129467 |
46 -- 52 |
1 -- 7 |
diaminopimelate epimerase |
|
_____________45______53\n_____________|_______|\n5'-UCU...UUUCC_______AGAUA...UGG-3'\n______________CGCCUGC\n______________|:|||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
46 -- 52 |
1 -- 7 |
-13.4276 kcal/mol |
1.39772 kcal/mol |
2.34039 kcal/mol |
45 53@LB@ | |@LB@5'-UCU...UUUCC AGAUA...UGG-3'@LB@ CGCCUGC@LB@ |:|||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -13.4276 kcal/mol@LB@Unfolding Energy - mRNA 1.39772 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 46 -- 52@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 22 |
6.552e-05 |
0.01049 |
b3829 |
metE |
-13.68 |
0.011485 |
203 -- 246 |
1 -- 47 |
5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase |
|
_____________202_____________________________________________247\n_____________|_______________________________________________|\n5'-GAG...AAAAU________U__AUC____A_______G__UCCCUC_____G______GUCGC...GUG-3'\n______________GACAAUAU_GA_____AC_CCC_UCG_UU______GCGUU_GCCUGC\n______________||||||||_||_____||_|||_|||_||______||:||_:|||||\n______________CUGUUAUA_CU_____UG_GGG_AGC_AA______CGUAA_UGGACG\n3'-UUU...UCAUU________C__CGCGU__C___U___G__CUGCAA_____G______-5'\n_____________|______________________________________________|\n_____________48_____________________________________________1\n |
204 -- 210 |
40 -- 46 |
-38.0501 kcal/mol |
7.59426 kcal/mol |
16.7767 kcal/mol |
202 247@LB@ | |@LB@5'-GAG...AAAAU U AUC A G UCCCUC G GUCGC...GUG-3'@LB@ GACAAUAU GA AC CCC UCG UU GCGUU GCCUGC@LB@ |||||||| || || ||| ||| || ||:|| :|||||@LB@ CUGUUAUA CU UG GGG AGC AA CGUAA UGGACG@LB@3'-UUU...UCAUU C CGCGU C U G CUGCAA G -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -38.0501 kcal/mol@LB@Unfolding Energy - mRNA 7.59426 kcal/mol@LB@Unfolding Energy - sRNA 16.7767 kcal/mol@LB@@LB@Position - mRNA 203 -- 246@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 42 |
0.0003514 |
0.02948 |
b3847 |
pepQ |
-12.53 |
0.024661 |
145 -- 205 |
37 -- 89 |
proline dipeptidase |
|
_____________144______________________________________________________________206\n_____________|________________________________________________________________|\n5'-UUG...UCUGG_________________AGA_____AGACU___GG________ACA____GGUAA___A_____AUCAC...UUC-3'\n______________AUGAA_CGA_UGUGCUA___UGCGG_____UAA__UCAAAAAA___GAAG______AA_AUGGA\n______________|:|||_|:|_|||||||___|||:|_____|||__||||||||___||||______||_|||||\n______________UGCUU_GUU_ACACGAU___ACGUC_____AUU__AGUUUUUU___CUUC______UU_UACCU\n3'-UUU...CAGCA_____A___A_______________________A_________C______AUUCUG__A_____CGCGU...ACG-5'\n_____________|________________________________________________________________|\n_____________90_______________________________________________________________36\n |
153 -- 159 |
73 -- 79 |
-31.666 kcal/mol |
11.3417 kcal/mol |
7.78939 kcal/mol |
144 206@LB@ | |@LB@5'-UUG...UCUGG AGA AGACU GG ACA GGUAA A AUCAC...UUC-3'@LB@ AUGAA CGA UGUGCUA UGCGG UAA UCAAAAAA GAAG AA AUGGA@LB@ |:||| |:| ||||||| |||:| ||| |||||||| |||| || |||||@LB@ UGCUU GUU ACACGAU ACGUC AUU AGUUUUUU CUUC UU UACCU@LB@3'-UUU...CAGCA A A A C AUUCUG A CGCGU...ACG-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -31.666 kcal/mol@LB@Unfolding Energy - mRNA 11.3417 kcal/mol@LB@Unfolding Energy - sRNA 7.78939 kcal/mol@LB@@LB@Position - mRNA 145 -- 205@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 189 |
0.008291 |
0.1545 |
b3882 |
yihU |
-11.60 |
0.044017 |
173 -- 244 |
4 -- 78 |
3-sulpholactaldehyde (SLA) reductase NADH-dependent; gamma-hydroxybutyrate dehydrogenase NADH-dependent |
b0509 b3125 |
_____________172________________________________________________________________________________245\n_____________|__________________________________________________________________________________|\n5'-CAC...AAAAA___ACAUAACU________________U______________C___AAUC__________G__UAG___AAA__G_______AAUGG...ACG-3'\n______________GUG________GU_AUUCAGGAGAGGG__________UAUGG_AGC____GCGUUUAUCG_UU___GAC___UG_GUUCGCC\n______________|||________||_|||||::|:|||:__________|||||_|||____:||:::||||_||___|||___||_:|||:||\n______________CAC________CA_UAAGUUUUUUCCU__________AUACC_UCG____UGCGGGUAGC_AA___CUG___AC_UAAGUGG\n3'-UUU...GUUAA___GAUACGU___U_____________UCAUUCUGUU_________CGU___________G________CA___G_______ACG-5'\n_____________|__________________________________________________________________________________|\n_____________79_________________________________________________________________________________3\n |
238 -- 244 |
4 -- 10 |
-50.248 kcal/mol |
17.9839 kcal/mol |
20.6724 kcal/mol |
172 245@LB@ | |@LB@5'-CAC...AAAAA ACAUAACU U C AAUC G UAG AAA G AAUGG...ACG-3'@LB@ GUG GU AUUCAGGAGAGGG UAUGG AGC GCGUUUAUCG UU GAC UG GUUCGCC@LB@ ||| || |||||::|:|||: ||||| ||| :||:::|||| || ||| || :|||:||@LB@ CAC CA UAAGUUUUUUCCU AUACC UCG UGCGGGUAGC AA CUG AC UAAGUGG@LB@3'-UUU...GUUAA GAUACGU U UCAUUCUGUU CGU G CA G ACG-5'@LB@ | |@LB@ 79 3@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -50.248 kcal/mol@LB@Unfolding Energy - mRNA 17.9839 kcal/mol@LB@Unfolding Energy - sRNA 20.6724 kcal/mol@LB@@LB@Position - mRNA 173 -- 244@LB@Position - sRNA 4 -- 78@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 153 |
0.00596 |
0.1368 |
b3892 |
fdoI |
-11.89 |
0.036676 |
181 -- 200 |
31 -- 53 |
formate dehydrogenase-O cytochrome b556 subunit |
|
_____________180_____________________201\n_____________|_______________________|\n5'-CCA...ACGAA___A___________________AUGAA...UGG-3'\n______________GAG_AAGACGA___GGAGCGCAA\n______________:||_|||||:|___|||||||||\n______________UUC_UUCUGUU___CCUCGCGUU\n3'-UUU...UUUCC___A_______AUA_________GCGGG...ACG-5'\n_____________|_______________________|\n_____________54______________________30\n |
194 -- 200 |
31 -- 37 |
-24.6235 kcal/mol |
2.95491 kcal/mol |
9.77014 kcal/mol |
180 201@LB@ | |@LB@5'-CCA...ACGAA A AUGAA...UGG-3'@LB@ GAG AAGACGA GGAGCGCAA@LB@ :|| |||||:| |||||||||@LB@ UUC UUCUGUU CCUCGCGUU@LB@3'-UUU...UUUCC A AUA GCGGG...ACG-5'@LB@ | |@LB@ 54 30@LB@@LB@@LB@Energy -11.89 kcal/mol@LB@Hybridization Energy -24.6235 kcal/mol@LB@Unfolding Energy - mRNA 2.95491 kcal/mol@LB@Unfolding Energy - sRNA 9.77014 kcal/mol@LB@@LB@Position - mRNA 181 -- 200@LB@Position - sRNA 31 -- 53@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 36 |
0.0002859 |
0.02798 |
b3927 |
glpF |
-13.42 |
0.013702 |
41 -- 78 |
5 -- 41 |
glycerol facilitator |
|
_____________40_____________________________________79\n_____________|______________________________________|\n5'-GAU...AAUAA____C___A___________UUA_____AG___CA___AUUUU...AAG-3'\n______________AUGG_GCG_UAACGCUCAUU___UGACG__GCA__CAC\n______________||||_|||_:|||||:|||:___|||||__|||__|||\n______________UACC_CGC_GUUGCGGGUAG___ACUGC__CGU__GUG\n3'-UUU...UGUUA____U_______________CGA_____AA___AA___GACG-5'\n_____________|______________________________________|\n_____________42_____________________________________4\n |
52 -- 58 |
25 -- 31 |
-39.917 kcal/mol |
11.2361 kcal/mol |
15.2629 kcal/mol |
40 79@LB@ | |@LB@5'-GAU...AAUAA C A UUA AG CA AUUUU...AAG-3'@LB@ AUGG GCG UAACGCUCAUU UGACG GCA CAC@LB@ |||| ||| :|||||:|||: ||||| ||| |||@LB@ UACC CGC GUUGCGGGUAG ACUGC CGU GUG@LB@3'-UUU...UGUUA U CGA AA AA GACG-5'@LB@ | |@LB@ 42 4@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -39.917 kcal/mol@LB@Unfolding Energy - mRNA 11.2361 kcal/mol@LB@Unfolding Energy - sRNA 15.2629 kcal/mol@LB@@LB@Position - mRNA 41 -- 78@LB@Position - sRNA 5 -- 41@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 12 |
2.043e-05 |
0.005627 |
b3935 |
priA |
-14.36 |
0.007166 |
198 -- 229 |
1 -- 34 |
Primosome factor n' (replication factor Y) |
|
_____________197________________________________230\n_____________|__________________________________|\n5'-GAA...AUGAU__U___________CC________C______C__UCCGC...GCG-3'\n______________GC_AUGCCCGUUGC___ACGUUGC__UUGCC_GU\n______________||_|:||||:|:||___|||||||__|::||_|:\n______________CG_UGCGGGUAGCG___UGCAACG__AGUGG_CG\n3'-UUU...CCUCG__U___________AAC_______UA_____A__-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
214 -- 220 |
11 -- 17 |
-36.548 kcal/mol |
6.92453 kcal/mol |
15.2664 kcal/mol |
197 230@LB@ | |@LB@5'-GAA...AUGAU U CC C C UCCGC...GCG-3'@LB@ GC AUGCCCGUUGC ACGUUGC UUGCC GU@LB@ || |:||||:|:|| ||||||| |::|| |:@LB@ CG UGCGGGUAGCG UGCAACG AGUGG CG@LB@3'-UUU...CCUCG U AAC UA A -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -36.548 kcal/mol@LB@Unfolding Energy - mRNA 6.92453 kcal/mol@LB@Unfolding Energy - sRNA 15.2664 kcal/mol@LB@@LB@Position - mRNA 198 -- 229@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 53 |
0.0006788 |
0.04512 |
b3949 |
frwC |
-10.17 |
0.100438 |
200 -- 218 |
68 -- 90 |
putative enzyme IIC component of PTS |
|
_____________199_____________________219\n_____________|_______________________|\n5'-UUG...CAGCU_______G_______________AUCCU...UGG-3'\n______________UAUGAAU_AGUUG____GUGCAG\n______________||:||||_|:|||____:|||||\n______________AUGCUUA_UUAAC____UACGUC\n3'-UUU...GCAGC_______G_____ACGA______AUUAA...ACG-5'\n_____________|_______________________|\n_____________91______________________67\n |
200 -- 206 |
84 -- 90 |
-18.2816 kcal/mol |
3.60123 kcal/mol |
4.51505 kcal/mol |
199 219@LB@ | |@LB@5'-UUG...CAGCU G AUCCU...UGG-3'@LB@ UAUGAAU AGUUG GUGCAG@LB@ ||:|||| |:||| :|||||@LB@ AUGCUUA UUAAC UACGUC@LB@3'-UUU...GCAGC G ACGA AUUAA...ACG-5'@LB@ | |@LB@ 91 67@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -18.2816 kcal/mol@LB@Unfolding Energy - mRNA 3.60123 kcal/mol@LB@Unfolding Energy - sRNA 4.51505 kcal/mol@LB@@LB@Position - mRNA 200 -- 218@LB@Position - sRNA 68 -- 90@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 84 -- 90@LB@ |
