17 |
0.0004446 |
0.08107 |
b1976 |
mtfA |
-9.25 |
0.026966 |
241 -- 268 |
36 -- 59 |
anti-repressor for DgsA(Mlc) |
|
_____________240___________________________269\n_____________|_____________________________|\n5'-AUA...ACAUC________CCUUCCCU_____________AUCGA...AAC-3'\n______________AAAC_UGC________GGCAGGAAGCACU\n______________||||_|||________:|||:||||||||\n______________UUUG_ACG________UCGUUCUUCGUGA\n3'-UUU...CCUAC____A___AAU__________________AUUUU...CAA-5'\n_____________|_____________________________|\n_____________60____________________________35\n |
262 -- 268 |
36 -- 42 |
-23.9855 kcal/mol |
8.48573 kcal/mol |
6.24948 kcal/mol |
240 269@LB@ | |@LB@5'-AUA...ACAUC CCUUCCCU AUCGA...AAC-3'@LB@ AAAC UGC GGCAGGAAGCACU@LB@ |||| ||| :|||:||||||||@LB@ UUUG ACG UCGUUCUUCGUGA@LB@3'-UUU...CCUAC A AAU AUUUU...CAA-5'@LB@ | |@LB@ 60 35@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -23.9855 kcal/mol@LB@Unfolding Energy - mRNA 8.48573 kcal/mol@LB@Unfolding Energy - sRNA 6.24948 kcal/mol@LB@@LB@Position - mRNA 241 -- 268@LB@Position - sRNA 36 -- 59@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 36 -- 42@LB@ |
89 |
0.006302 |
0.2266 |
b3208 |
mtgA |
-4.90 |
0.336213 |
28 -- 47 |
28 -- 47 |
biosynthetic peptidoglycan transglycosylase |
|
_____________27____________________48\n_____________|_____________________|\n5'-UUG...AUACC____________GG_______GGGCG...UGU-3'\n______________GC_AGAAGUGCU__AAGAGAU\n______________||_|||||::||__||:|:||\n______________CG_UCUUCGUGA__UUUUUUA\n3'-UUU...GAAUU__U_________A________AGCAA...CAA-5'\n_____________|_____________________|\n_____________48____________________27\n |
32 -- 38 |
36 -- 42 |
-15.6239 kcal/mol |
4.50128 kcal/mol |
6.22212 kcal/mol |
27 48@LB@ | |@LB@5'-UUG...AUACC GG GGGCG...UGU-3'@LB@ GC AGAAGUGCU AAGAGAU@LB@ || |||||::|| ||:|:||@LB@ CG UCUUCGUGA UUUUUUA@LB@3'-UUU...GAAUU U A AGCAA...CAA-5'@LB@ | |@LB@ 48 27@LB@@LB@@LB@Energy -4.90 kcal/mol@LB@Hybridization Energy -15.6239 kcal/mol@LB@Unfolding Energy - mRNA 4.50128 kcal/mol@LB@Unfolding Energy - sRNA 6.22212 kcal/mol@LB@@LB@Position - mRNA 28 -- 47@LB@Position - sRNA 28 -- 47@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 36 -- 42@LB@ |
42 |
0.001686 |
0.1293 |
b2733 |
mutS |
-6.21 |
0.172669 |
203 -- 222 |
25 -- 42 |
methyl-directed mismatch repair protein |
|
_____________202__________________223\n_____________|____________________|\n5'-GAU...CCCAU______AA_________U__ACGCC...UGG-3'\n______________GAGUGC__UAGAAAAUU_CG\n______________:||::|__||:||||||_||\n______________UUCGUG__AUUUUUUAA_GC\n3'-UUU...CGUUC______A_____________AAUGU...CAA-5'\n_____________|____________________|\n_____________43___________________24\n |
213 -- 219 |
27 -- 33 |
-10.4027 kcal/mol |
2.54535 kcal/mol |
1.64855 kcal/mol |
202 223@LB@ | |@LB@5'-GAU...CCCAU AA U ACGCC...UGG-3'@LB@ GAGUGC UAGAAAAUU CG@LB@ :||::| ||:|||||| ||@LB@ UUCGUG AUUUUUUAA GC@LB@3'-UUU...CGUUC A AAUGU...CAA-5'@LB@ | |@LB@ 43 24@LB@@LB@@LB@Energy -6.21 kcal/mol@LB@Hybridization Energy -10.4027 kcal/mol@LB@Unfolding Energy - mRNA 2.54535 kcal/mol@LB@Unfolding Energy - sRNA 1.64855 kcal/mol@LB@@LB@Position - mRNA 203 -- 222@LB@Position - sRNA 25 -- 42@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 27 -- 33@LB@ |
108 |
0.009338 |
0.2693 |
b0639 |
nadD |
-9.48 |
0.023112 |
42 -- 61 |
34 -- 53 |
nicotinic acid mononucleotide adenylyltransferase NAD(P)-dependent |
|
_____________41___________________62\n_____________|____________________|\n5'-AUG...AAAUC________C___C___G___CGUCA...CGC-3'\n______________GCUUAAGU_AGA_GCA_UUA\n______________|||||||:_|||_|||_|||\n______________CGAAUUCG_UCU_CGU_AAU\n3'-UUU...UUGAA________U___U___G___UUUUU...CAA-5'\n_____________|____________________|\n_____________54___________________33\n |
42 -- 48 |
47 -- 53 |
-20.1483 kcal/mol |
4.55179 kcal/mol |
6.11529 kcal/mol |
41 62@LB@ | |@LB@5'-AUG...AAAUC C C G CGUCA...CGC-3'@LB@ GCUUAAGU AGA GCA UUA@LB@ |||||||: ||| ||| |||@LB@ CGAAUUCG UCU CGU AAU@LB@3'-UUU...UUGAA U U G UUUUU...CAA-5'@LB@ | |@LB@ 54 33@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -20.1483 kcal/mol@LB@Unfolding Energy - mRNA 4.55179 kcal/mol@LB@Unfolding Energy - sRNA 6.11529 kcal/mol@LB@@LB@Position - mRNA 42 -- 61@LB@Position - sRNA 34 -- 53@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 47 -- 53@LB@ |
179 |
0.02107 |
0.3768 |
b3226 |
nanR |
-7.22 |
0.096643 |
281 -- 296 |
26 -- 41 |
sialic acid-inducible nan operon repressor |
|
_____________280______________297\n_____________|________________|\n5'-AUU...CCGCU_____G_______C__UCCG-3'\n______________GGCGC_UAAAAAA_UC\n______________:||:|_|||||||_||\n______________UCGUG_AUUUUUU_AG\n3'-UUU...GUUCU_____A_______A__CAAUG...CAA-5'\n_____________|________________|\n_____________42_______________25\n |
287 -- 293 |
29 -- 35 |
-11.6683 kcal/mol |
2.7952 kcal/mol |
1.64829 kcal/mol |
280 297@LB@ | |@LB@5'-AUU...CCGCU G C UCCG-3'@LB@ GGCGC UAAAAAA UC@LB@ :||:| ||||||| ||@LB@ UCGUG AUUUUUU AG@LB@3'-UUU...GUUCU A A CAAUG...CAA-5'@LB@ | |@LB@ 42 25@LB@@LB@@LB@Energy -7.22 kcal/mol@LB@Hybridization Energy -11.6683 kcal/mol@LB@Unfolding Energy - mRNA 2.7952 kcal/mol@LB@Unfolding Energy - sRNA 1.64829 kcal/mol@LB@@LB@Position - mRNA 281 -- 296@LB@Position - sRNA 26 -- 41@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 29 -- 35@LB@ |
148 |
0.01496 |
0.3255 |
b2202 |
napC |
-5.47 |
0.254772 |
189 -- 211 |
26 -- 46 |
quinol dehydrogenase electron source for NapAB |
|
_____________188_____________________212\n_____________|_______________________|\n5'-ACG...GGAAA_______U____A__________UGACC...GUU-3'\n______________UAAGAGG_UAUU_UGGGAAAUUC\n______________:||||:|_:|:|_|:::||||||\n______________GUUCUUC_GUGA_AUUUUUUAAG\n3'-UUU...AAUUC_______________________CAAUG...CAA-5'\n_____________|_______________________|\n_____________47______________________25\n |
205 -- 211 |
26 -- 32 |
-14.2639 kcal/mol |
2.66276 kcal/mol |
6.13041 kcal/mol |
188 212@LB@ | |@LB@5'-ACG...GGAAA U A UGACC...GUU-3'@LB@ UAAGAGG UAUU UGGGAAAUUC@LB@ :||||:| :|:| |:::||||||@LB@ GUUCUUC GUGA AUUUUUUAAG@LB@3'-UUU...AAUUC CAAUG...CAA-5'@LB@ | |@LB@ 47 25@LB@@LB@@LB@Energy -5.47 kcal/mol@LB@Hybridization Energy -14.2639 kcal/mol@LB@Unfolding Energy - mRNA 2.66276 kcal/mol@LB@Unfolding Energy - sRNA 6.13041 kcal/mol@LB@@LB@Position - mRNA 189 -- 211@LB@Position - sRNA 26 -- 46@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 26 -- 32@LB@ |
27 |
0.0008083 |
0.09021 |
b2711 |
norW |
-10.17 |
0.014477 |
99 -- 112 |
13 -- 26 |
NADH:flavorubredoxin oxidoreductase |
|
_____________98_____________113\n_____________|______________|\n5'-GAA...CAGGA______________CGCCG...UUG-3'\n______________CGUUGCGCCAGGAA\n______________||||:|:|||||||\n______________GCAAUGUGGUCCUU\n3'-UUU...UUUAA______________UAGAC...CAA-5'\n_____________|______________|\n_____________27_____________12\n |
106 -- 112 |
13 -- 19 |
-23.5838 kcal/mol |
5.14562 kcal/mol |
8.27144 kcal/mol |
98 113@LB@ | |@LB@5'-GAA...CAGGA CGCCG...UUG-3'@LB@ CGUUGCGCCAGGAA@LB@ ||||:|:|||||||@LB@ GCAAUGUGGUCCUU@LB@3'-UUU...UUUAA UAGAC...CAA-5'@LB@ | |@LB@ 27 12@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -23.5838 kcal/mol@LB@Unfolding Energy - mRNA 5.14562 kcal/mol@LB@Unfolding Energy - sRNA 8.27144 kcal/mol@LB@@LB@Position - mRNA 99 -- 112@LB@Position - sRNA 13 -- 26@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 13 -- 19@LB@ |
107 |
0.009263 |
0.2693 |
b3034 |
nudF |
-7.86 |
0.065629 |
202 -- 214 |
42 -- 54 |
ADP-ribose pyrophosphatase |
|
_____________201___________215\n_____________|_____________|\n5'-AUU...AACAA_________C___CAACC...UUU-3'\n______________UGCUUAAGC_AGA\n______________|||||||||_|||\n______________ACGAAUUCG_UCU\n3'-UUU...UUUGA_________U___UCGUG...CAA-5'\n_____________|_____________|\n_____________55____________41\n |
204 -- 210 |
46 -- 52 |
-15.7149 kcal/mol |
1.83586 kcal/mol |
6.01534 kcal/mol |
201 215@LB@ | |@LB@5'-AUU...AACAA C CAACC...UUU-3'@LB@ UGCUUAAGC AGA@LB@ ||||||||| |||@LB@ ACGAAUUCG UCU@LB@3'-UUU...UUUGA U UCGUG...CAA-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -7.86 kcal/mol@LB@Hybridization Energy -15.7149 kcal/mol@LB@Unfolding Energy - mRNA 1.83586 kcal/mol@LB@Unfolding Energy - sRNA 6.01534 kcal/mol@LB@@LB@Position - mRNA 202 -- 214@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 46 -- 52@LB@ |
8 |
5.642e-05 |
0.02272 |
b2282 |
nuoH |
-5.33 |
0.272754 |
189 -- 221 |
13 -- 44 |
NADH:ubiquinone oxidoreductase membrane subunit H |
|
_____________188________________________________222\n_____________|__________________________________|\n5'-CUC...CUCAA________AACAAU_____G_A__U_________CUGAU...GCU-3'\n______________GGAGGCAC______GAGUU_G_UA_CACC_GGAA\n______________:||:||||______:|:||_|_||_||||_||||\n______________UCUUCGUG______UUUAA_C_AU_GUGG_CCUU\n3'-UUU...UUCGU________AAUUU______G_A_______U____UAGAC...CAA-5'\n_____________|__________________________________|\n_____________45_________________________________12\n |
190 -- 196 |
37 -- 43 |
-24.1154 kcal/mol |
6.60325 kcal/mol |
12.1776 kcal/mol |
188 222@LB@ | |@LB@5'-CUC...CUCAA AACAAU G A U CUGAU...GCU-3'@LB@ GGAGGCAC GAGUU G UA CACC GGAA@LB@ :||:|||| :|:|| | || |||| ||||@LB@ UCUUCGUG UUUAA C AU GUGG CCUU@LB@3'-UUU...UUCGU AAUUU G A U UAGAC...CAA-5'@LB@ | |@LB@ 45 12@LB@@LB@@LB@Energy -5.33 kcal/mol@LB@Hybridization Energy -24.1154 kcal/mol@LB@Unfolding Energy - mRNA 6.60325 kcal/mol@LB@Unfolding Energy - sRNA 12.1776 kcal/mol@LB@@LB@Position - mRNA 189 -- 221@LB@Position - sRNA 13 -- 44@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 37 -- 43@LB@ |
67 |
0.003475 |
0.1645 |
b0416 |
nusB |
-6.41 |
0.154688 |
140 -- 154 |
27 -- 40 |
transcription antitermination protein |
|
_____________139_____________155\n_____________|_______________|\n5'-AAG...UGACC__________U____AAUGU...AGU-3'\n______________GCGCUUGAAA_GAUU\n______________||:|||:|||_:|||\n______________CGUGAAUUUU_UUAA\n3'-UUU...UUCUU_______________GCAAU...CAA-5'\n_____________|_______________|\n_____________41______________26\n |
142 -- 148 |
32 -- 38 |
-12.213 kcal/mol |
4.16264 kcal/mol |
1.6425 kcal/mol |
139 155@LB@ | |@LB@5'-AAG...UGACC U AAUGU...AGU-3'@LB@ GCGCUUGAAA GAUU@LB@ ||:|||:||| :|||@LB@ CGUGAAUUUU UUAA@LB@3'-UUU...UUCUU GCAAU...CAA-5'@LB@ | |@LB@ 41 26@LB@@LB@@LB@Energy -6.41 kcal/mol@LB@Hybridization Energy -12.213 kcal/mol@LB@Unfolding Energy - mRNA 4.16264 kcal/mol@LB@Unfolding Energy - sRNA 1.6425 kcal/mol@LB@@LB@Position - mRNA 140 -- 154@LB@Position - sRNA 27 -- 40@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 32 -- 38@LB@ |