| 92 |
0.006692 |
0.2343 |
b2421 |
cysM |
-10.79 |
0.009324 |
40 -- 63 |
37 -- 60 |
cysteine synthase B (O-acetylserine sulfhydrolase B) |
|
_____________39_______________________64\n_____________|________________________|\n5'-GCU...GAUGA__________CUC___CA______CUGAU...GCA-3'\n______________GGAACUUGCU___GCA__AAGCGC\n______________|:||||||||___|||__||||:|\n______________CUUUGAACGA___CGU__UUCGUG\n3'-UUU...CCCUA__________AUU___UC______AAUUU...CAA-5'\n_____________|________________________|\n_____________61_______________________36\n |
43 -- 49 |
51 -- 57 |
-24.0401 kcal/mol |
7.00094 kcal/mol |
6.24651 kcal/mol |
39 64@LB@ | |@LB@5'-GCU...GAUGA CUC CA CUGAU...GCA-3'@LB@ GGAACUUGCU GCA AAGCGC@LB@ |:|||||||| ||| ||||:|@LB@ CUUUGAACGA CGU UUCGUG@LB@3'-UUU...CCCUA AUU UC AAUUU...CAA-5'@LB@ | |@LB@ 61 36@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -24.0401 kcal/mol@LB@Unfolding Energy - mRNA 7.00094 kcal/mol@LB@Unfolding Energy - sRNA 6.24651 kcal/mol@LB@@LB@Position - mRNA 40 -- 63@LB@Position - sRNA 37 -- 60@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 110 |
0.009505 |
0.2693 |
b0632 |
dacA |
-12.82 |
0.002052 |
146 -- 175 |
26 -- 57 |
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) |
|
_____________145______________________________176\n_____________|________________________________|\n5'-CCU...AGUGC_______AU______________UUUU_____CAUCA...AUA-3'\n______________AUUUGCU__AGUAGG__GCACUU____AAUUC\n______________|:|||||__||:|:|__||||||____|||||\n______________UGAACGA__UCGUUC__CGUGAA____UUAAG\n3'-UUU...UACUU_______AU______UU______UUUU_____CAAUG...CAA-5'\n_____________|________________________________|\n_____________58_______________________________25\n |
146 -- 152 |
51 -- 57 |
-23.8315 kcal/mol |
4.73353 kcal/mol |
6.27605 kcal/mol |
145 176@LB@ | |@LB@5'-CCU...AGUGC AU UUUU CAUCA...AUA-3'@LB@ AUUUGCU AGUAGG GCACUU AAUUC@LB@ |:||||| ||:|:| |||||| |||||@LB@ UGAACGA UCGUUC CGUGAA UUAAG@LB@3'-UUU...UACUU AU UU UUUU CAAUG...CAA-5'@LB@ | |@LB@ 58 25@LB@@LB@@LB@Energy -12.82 kcal/mol@LB@Hybridization Energy -23.8315 kcal/mol@LB@Unfolding Energy - mRNA 4.73353 kcal/mol@LB@Unfolding Energy - sRNA 6.27605 kcal/mol@LB@@LB@Position - mRNA 146 -- 175@LB@Position - sRNA 26 -- 57@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 31 |
0.0009469 |
0.09599 |
b0166 |
dapD |
-11.60 |
0.005180 |
96 -- 124 |
11 -- 40 |
2 3 4 5-tetrahydropyridine-2-carboxylate N-succinyltransferase |
|
_____________95_____________________________125\n_____________|______________________________|\n5'-UUG...GGCGU________UAACGA_______G________GCAUC...AGG-3'\n______________GCGCUUAA_______GUUGCA_CAGGAAGU\n______________||:|||||_______|||:||_||||||:|\n______________CGUGAAUU_______CAAUGU_GUCCUUUA\n3'-UUU...UUCUU________UUUUAAG______G________GACUA...CAA-5'\n_____________|______________________________|\n_____________41_____________________________10\n |
97 -- 103 |
33 -- 39 |
-29.7713 kcal/mol |
8.96001 kcal/mol |
9.20882 kcal/mol |
95 125@LB@ | |@LB@5'-UUG...GGCGU UAACGA G GCAUC...AGG-3'@LB@ GCGCUUAA GUUGCA CAGGAAGU@LB@ ||:||||| |||:|| ||||||:|@LB@ CGUGAAUU CAAUGU GUCCUUUA@LB@3'-UUU...UUCUU UUUUAAG G GACUA...CAA-5'@LB@ | |@LB@ 41 10@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -29.7713 kcal/mol@LB@Unfolding Energy - mRNA 8.96001 kcal/mol@LB@Unfolding Energy - sRNA 9.20882 kcal/mol@LB@@LB@Position - mRNA 96 -- 124@LB@Position - sRNA 11 -- 40@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 120 |
0.01039 |
0.2788 |
b2314 |
dedD |
-6.27 |
0.167184 |
42 -- 54 |
45 -- 58 |
membrane-anchored periplasmic protein involved in septation |
|
_____________41_____________55\n_____________|______________|\n5'-UUG...AGAAC______________UUUGG...AUU-3'\n______________AAC_UGCUUGAGCA\n______________|||_|||||:||||\n______________UUG_ACGAAUUCGU\n3'-UUU...CUACU___A__________UCUUC...CAA-5'\n_____________|______________|\n_____________59_____________44\n |
47 -- 53 |
46 -- 52 |
-15.7533 kcal/mol |
3.46622 kcal/mol |
6.01947 kcal/mol |
41 55@LB@ | |@LB@5'-UUG...AGAAC UUUGG...AUU-3'@LB@ AAC UGCUUGAGCA@LB@ ||| |||||:||||@LB@ UUG ACGAAUUCGU@LB@3'-UUU...CUACU A UCUUC...CAA-5'@LB@ | |@LB@ 59 44@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -15.7533 kcal/mol@LB@Unfolding Energy - mRNA 3.46622 kcal/mol@LB@Unfolding Energy - sRNA 6.01947 kcal/mol@LB@@LB@Position - mRNA 42 -- 54@LB@Position - sRNA 45 -- 58@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 167 |
0.01879 |
0.3614 |
b4383 |
deoB |
-8.94 |
0.033088 |
90 -- 118 |
37 -- 59 |
phosphopentomutase |
|
_____________89____________________________119\n_____________|_____________________________|\n5'-AGG...CAAUU________CGAUA_____CC__A______ACCAA...AUA-3'\n______________AAACUUGC_____AAGCA__GG_AAGCAC\n______________||||||||_____|||||__:|_||||||\n______________UUUGAACG_____UUCGU__UC_UUCGUG\n3'-UUU...CCUAC________AA___________________AAUUU...CAA-5'\n_____________|_____________________________|\n_____________60____________________________36\n |
91 -- 97 |
52 -- 58 |
-21.3309 kcal/mol |
6.14475 kcal/mol |
6.24627 kcal/mol |
89 119@LB@ | |@LB@5'-AGG...CAAUU CGAUA CC A ACCAA...AUA-3'@LB@ AAACUUGC AAGCA GG AAGCAC@LB@ |||||||| ||||| :| ||||||@LB@ UUUGAACG UUCGU UC UUCGUG@LB@3'-UUU...CCUAC AA AAUUU...CAA-5'@LB@ | |@LB@ 60 36@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -21.3309 kcal/mol@LB@Unfolding Energy - mRNA 6.14475 kcal/mol@LB@Unfolding Energy - sRNA 6.24627 kcal/mol@LB@@LB@Position - mRNA 90 -- 118@LB@Position - sRNA 37 -- 59@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 71 |
0.00365 |
0.1656 |
b4478 |
dgoD |
-6.42 |
0.153775 |
171 -- 195 |
38 -- 57 |
D-galactonate dehydratase |
|
_____________170_______________________196\n_____________|_________________________|\n5'-AAA...GCAGC_______A____GUAUC________GUGCA...UGA-3'\n______________AUUUGUU_AGGC_____GAGAGGCA\n______________|:|||:|_|:||_____:|||:|||\n______________UGAACGA_UUCG_____UUCUUCGU\n3'-UUU...UACUU_______A_________________GAAUU...CAA-5'\n_____________|_________________________|\n_____________58________________________37\n |
189 -- 195 |
38 -- 44 |
-17.6382 kcal/mol |
5.02573 kcal/mol |
6.19395 kcal/mol |
170 196@LB@ | |@LB@5'-AAA...GCAGC A GUAUC GUGCA...UGA-3'@LB@ AUUUGUU AGGC GAGAGGCA@LB@ |:|||:| |:|| :|||:|||@LB@ UGAACGA UUCG UUCUUCGU@LB@3'-UUU...UACUU A GAAUU...CAA-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -6.42 kcal/mol@LB@Hybridization Energy -17.6382 kcal/mol@LB@Unfolding Energy - mRNA 5.02573 kcal/mol@LB@Unfolding Energy - sRNA 6.19395 kcal/mol@LB@@LB@Position - mRNA 171 -- 195@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 126 |
0.01159 |
0.2964 |
b3693 |
dgoK |
-8.44 |
0.045823 |
138 -- 160 |
34 -- 54 |
2-oxo-3-deoxygalactonate kinase |
|
_____________137_____________________161\n_____________|_______________________|\n5'-CAG...GGCGA___GGCA_______C________CCAUG...CAG-3'\n______________UGC____GAGCAGG_GGCGCUUA\n______________|||____:||||:|_:||:||||\n______________ACG____UUCGUUC_UCGUGAAU\n3'-UUU...UUUGA___AA_________U________UUUUU...CAA-5'\n_____________|_______________________|\n_____________55______________________33\n |
154 -- 160 |
34 -- 40 |
-23.026 kcal/mol |
8.41527 kcal/mol |
6.17478 kcal/mol |
137 161@LB@ | |@LB@5'-CAG...GGCGA GGCA C CCAUG...CAG-3'@LB@ UGC GAGCAGG GGCGCUUA@LB@ ||| :||||:| :||:||||@LB@ ACG UUCGUUC UCGUGAAU@LB@3'-UUU...UUUGA AA U UUUUU...CAA-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -8.44 kcal/mol@LB@Hybridization Energy -23.026 kcal/mol@LB@Unfolding Energy - mRNA 8.41527 kcal/mol@LB@Unfolding Energy - sRNA 6.17478 kcal/mol@LB@@LB@Position - mRNA 138 -- 160@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 70 |
0.003574 |
0.1645 |
b0145 |
dksA |
-6.64 |
0.135564 |
191 -- 197 |
39 -- 45 |
transcriptional regulator of rRNA transcription; DnaK suppressor protein |
|
_____________190_____198\n_____________|_______|\n5'-AAU...UUAAG_______AACAU...AUG-3'\n______________GAGAAGC\n______________:||||||\n______________UUCUUCG\n3'-UUU...AUUCG_______UGAAU...CAA-5'\n_____________|_______|\n_____________46______38\n |
191 -- 197 |
39 -- 45 |
-7.63285 kcal/mol |
0.475666 kcal/mol |
0.514773 kcal/mol |
190 198@LB@ | |@LB@5'-AAU...UUAAG AACAU...AUG-3'@LB@ GAGAAGC@LB@ :||||||@LB@ UUCUUCG@LB@3'-UUU...AUUCG UGAAU...CAA-5'@LB@ | |@LB@ 46 38@LB@@LB@@LB@Energy -6.64 kcal/mol@LB@Hybridization Energy -7.63285 kcal/mol@LB@Unfolding Energy - mRNA 0.475666 kcal/mol@LB@Unfolding Energy - sRNA 0.514773 kcal/mol@LB@@LB@Position - mRNA 191 -- 197@LB@Position - sRNA 39 -- 45@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 85 |
0.005692 |
0.2157 |
b4052 |
dnaB |
-8.38 |
0.047402 |
89 -- 103 |
26 -- 40 |
replicative DNA helicase |
|
_____________88______________104\n_____________|_______________|\n5'-UGC...CCACC_______U_______AAUUC...CGG-3'\n______________GUGCUUG_GAAAUUC\n______________|::|||:_:||||||\n______________CGUGAAU_UUUUAAG\n3'-UUU...UUCUU_______U_______CAAUG...CAA-5'\n_____________|_______________|\n_____________41______________25\n |
97 -- 103 |
26 -- 32 |
-13.045 kcal/mol |
3.01413 kcal/mol |
1.64811 kcal/mol |
88 104@LB@ | |@LB@5'-UGC...CCACC U AAUUC...CGG-3'@LB@ GUGCUUG GAAAUUC@LB@ |::|||: :||||||@LB@ CGUGAAU UUUUAAG@LB@3'-UUU...UUCUU U CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -13.045 kcal/mol@LB@Unfolding Energy - mRNA 3.01413 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 89 -- 103@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 48 |
0.002202 |
0.1465 |
b3209 |
elbB |
-11.61 |
0.005163 |
95 -- 137 |
2 -- 41 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
_____________94__________________________________________138\n_____________|___________________________________________|\n5'-GCG...AAGAU___AAA_______U____________G_AUC____AA______GAUGC...GUG-3'\n______________AGC___ACUUAAA_GAUUUGUUACAU_A___AGUU__AUGUGU\n______________|||___|||||||_:|||:||||||:_|___|:|:__||||||\n______________UCG___UGAAUUU_UUAAGCAAUGUG_U___UUAG__UACACA\n3'-UUU...GUUCU_____________U____________G_CCU____AC______A-5'\n_____________|___________________________________________|\n_____________42__________________________________________1\n |
101 -- 107 |
32 -- 38 |
-29.0989 kcal/mol |
8.27062 kcal/mol |
9.22136 kcal/mol |
94 138@LB@ | |@LB@5'-GCG...AAGAU AAA U G AUC AA GAUGC...GUG-3'@LB@ AGC ACUUAAA GAUUUGUUACAU A AGUU AUGUGU@LB@ ||| ||||||| :|||:||||||: | |:|: ||||||@LB@ UCG UGAAUUU UUAAGCAAUGUG U UUAG UACACA@LB@3'-UUU...GUUCU U G CCU AC A-5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -11.61 kcal/mol@LB@Hybridization Energy -29.0989 kcal/mol@LB@Unfolding Energy - mRNA 8.27062 kcal/mol@LB@Unfolding Energy - sRNA 9.22136 kcal/mol@LB@@LB@Position - mRNA 95 -- 137@LB@Position - sRNA 2 -- 41@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 32 -- 38@LB@ |
