1 |
4.307e-10 |
1.387e-06 |
b2741 |
rpoS |
-17.23 |
0.000044 |
75 -- 104 |
10 -- 40 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________74______________________________105\n_____________|_______________________________|\n5'-CGG...CGCUU______U______________AG________CGUAA...AGG-3'\n______________GCAUUU__GAAAUUCGUUACA__GGGAAAUC\n______________|||:||__:||||||||||||__:|||||||\n______________CGUGAA__UUUUAAGCAAUGU__UCCUUUAG\n3'-UUU...UUCUU______UU_____________GG________ACUAC...CAA-5'\n_____________|_______________________________|\n_____________41______________________________9\n |
98 -- 104 |
10 -- 16 |
-32.4258 kcal/mol |
5.97429 kcal/mol |
9.22048 kcal/mol |
74 105@LB@ | |@LB@5'-CGG...CGCUU U AG CGUAA...AGG-3'@LB@ GCAUUU GAAAUUCGUUACA GGGAAAUC@LB@ |||:|| :|||||||||||| :|||||||@LB@ CGUGAA UUUUAAGCAAUGU UCCUUUAG@LB@3'-UUU...UUCUU UU GG ACUAC...CAA-5'@LB@ | |@LB@ 41 9@LB@@LB@@LB@Energy -17.23 kcal/mol@LB@Hybridization Energy -32.4258 kcal/mol@LB@Unfolding Energy - mRNA 5.97429 kcal/mol@LB@Unfolding Energy - sRNA 9.22048 kcal/mol@LB@@LB@Position - mRNA 75 -- 104@LB@Position - sRNA 10 -- 40@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 10 -- 16@LB@ |
134 |
0.01281 |
0.308 |
b3316 |
rpsS |
-8.71 |
0.038435 |
274 -- 288 |
39 -- 53 |
30S ribosomal subunit protein S19 |
|
_____________273______________289\n_____________|________________|\n5'-GCG...GGAAA__G____A________CCCUG...CUU-3'\n______________GC__GAG_CAAGAAGC\n______________||__:||_||||||||\n______________CG__UUC_GUUCUUCG\n3'-UUU...UUGAA__AA____________UGAAU...CAA-5'\n_____________|________________|\n_____________54_______________38\n |
282 -- 288 |
39 -- 45 |
-16.1876 kcal/mol |
1.46049 kcal/mol |
6.01745 kcal/mol |
273 289@LB@ | |@LB@5'-GCG...GGAAA G A CCCUG...CUU-3'@LB@ GC GAG CAAGAAGC@LB@ || :|| ||||||||@LB@ CG UUC GUUCUUCG@LB@3'-UUU...UUGAA AA UGAAU...CAA-5'@LB@ | |@LB@ 54 38@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -16.1876 kcal/mol@LB@Unfolding Energy - mRNA 1.46049 kcal/mol@LB@Unfolding Energy - sRNA 6.01745 kcal/mol@LB@@LB@Position - mRNA 274 -- 288@LB@Position - sRNA 39 -- 53@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 39 -- 45@LB@ |
187 |
0.02188 |
0.3768 |
b3065 |
rpsU |
-8.54 |
0.042773 |
188 -- 200 |
37 -- 49 |
30S ribosomal subunit protein S21 |
|
_____________187___________201\n_____________|_____________|\n5'-GAC...AUCAA_____________AUGCC...GUC-3'\n______________AGGUGAGAGGCAC\n______________|:|::|||:||||\n______________UUCGUUCUUCGUG\n3'-UUU...ACGAA_____________AAUUU...CAA-5'\n_____________|_____________|\n_____________50____________36\n |
194 -- 200 |
37 -- 43 |
-18.635 kcal/mol |
4.05763 kcal/mol |
6.03369 kcal/mol |
187 201@LB@ | |@LB@5'-GAC...AUCAA AUGCC...GUC-3'@LB@ AGGUGAGAGGCAC@LB@ |:|::|||:||||@LB@ UUCGUUCUUCGUG@LB@3'-UUU...ACGAA AAUUU...CAA-5'@LB@ | |@LB@ 50 36@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -18.635 kcal/mol@LB@Unfolding Energy - mRNA 4.05763 kcal/mol@LB@Unfolding Energy - sRNA 6.03369 kcal/mol@LB@@LB@Position - mRNA 188 -- 200@LB@Position - sRNA 37 -- 49@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 37 -- 43@LB@ |
32 |
0.0009536 |
0.09599 |
b0637 |
rsfS |
-12.32 |
0.003012 |
197 -- 230 |
23 -- 59 |
ribosomal silencing factor |
|
_____________196___________________________________231\n_____________|_____________________________________|\n5'-AUU...GGGGA________A_______________CC____U______AUCGA...UCA-3'\n______________AAACUUGC__GGGUA__AAGCACU__AGGA_UUUGUU\n______________||||||||__::|:|__|||||||__|::|_||:|||\n______________UUUGAACG__UUCGU__UUCGUGA__UUUU_AAGCAA\n3'-UUU...CCUAC________AA_____UC_______AU____U______UGUGG...CAA-5'\n_____________|_____________________________________|\n_____________60____________________________________22\n |
211 -- 217 |
36 -- 42 |
-25.7611 kcal/mol |
7.16036 kcal/mol |
6.27609 kcal/mol |
196 231@LB@ | |@LB@5'-AUU...GGGGA A CC U AUCGA...UCA-3'@LB@ AAACUUGC GGGUA AAGCACU AGGA UUUGUU@LB@ |||||||| ::|:| ||||||| |::| ||:|||@LB@ UUUGAACG UUCGU UUCGUGA UUUU AAGCAA@LB@3'-UUU...CCUAC AA UC AU U UGUGG...CAA-5'@LB@ | |@LB@ 60 22@LB@@LB@@LB@Energy -12.32 kcal/mol@LB@Hybridization Energy -25.7611 kcal/mol@LB@Unfolding Energy - mRNA 7.16036 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 197 -- 230@LB@Position - sRNA 23 -- 59@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 36 -- 42@LB@ |
72 |
0.003773 |
0.1688 |
b1860 |
ruvB |
-7.81 |
0.067658 |
103 -- 111 |
38 -- 46 |
ATP-dependent DNA helicase component of RuvABC resolvasome |
|
_____________102_______112\n_____________|_________|\n5'-ACG...AACCA_________AGCCG...GUC-3'\n______________CAAGAAGCA\n______________|||||||||\n______________GUUCUUCGU\n3'-UUU...AAUUC_________GAAUU...CAA-5'\n_____________|_________|\n_____________47________37\n |
105 -- 111 |
38 -- 44 |
-11.4188 kcal/mol |
0.978333 kcal/mol |
2.62609 kcal/mol |
102 112@LB@ | |@LB@5'-ACG...AACCA AGCCG...GUC-3'@LB@ CAAGAAGCA@LB@ |||||||||@LB@ GUUCUUCGU@LB@3'-UUU...AAUUC GAAUU...CAA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -11.4188 kcal/mol@LB@Unfolding Energy - mRNA 0.978333 kcal/mol@LB@Unfolding Energy - sRNA 2.62609 kcal/mol@LB@@LB@Position - mRNA 103 -- 111@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 38 -- 44@LB@ |
163 |
0.0182 |
0.3566 |
b0397 |
sbcC |
-8.10 |
0.056577 |
196 -- 210 |
26 -- 43 |
exonuclease dsDNA ATP-dependent |
|
_____________195________________211\n_____________|__________________|\n5'-GAA...AACAC__________________UCAGC...UUG-3'\n______________GAAGCAU___GAAAAUUC\n______________||||||:___:|||||||\n______________CUUCGUG___UUUUUAAG\n3'-UUU...UCGUU_______AAU________CAAUG...CAA-5'\n_____________|__________________|\n_____________44_________________25\n |
204 -- 210 |
26 -- 32 |
-13.6528 kcal/mol |
1.79109 kcal/mol |
3.75931 kcal/mol |
195 211@LB@ | |@LB@5'-GAA...AACAC UCAGC...UUG-3'@LB@ GAAGCAU GAAAAUUC@LB@ ||||||: :|||||||@LB@ CUUCGUG UUUUUAAG@LB@3'-UUU...UCGUU AAU CAAUG...CAA-5'@LB@ | |@LB@ 44 25@LB@@LB@@LB@Energy -8.10 kcal/mol@LB@Hybridization Energy -13.6528 kcal/mol@LB@Unfolding Energy - mRNA 1.79109 kcal/mol@LB@Unfolding Energy - sRNA 3.75931 kcal/mol@LB@@LB@Position - mRNA 196 -- 210@LB@Position - sRNA 26 -- 43@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 26 -- 32@LB@ |
190 |
0.02239 |
0.3796 |
b0724 |
sdhB |
-6.89 |
0.117799 |
143 -- 176 |
24 -- 60 |
succinate dehydrogenase FeS subunit |
|
_____________142____________________________________177\n_____________|______________________________________|\n5'-UUU...GAACC_________GCCC____UUCC____C____________ACUUA...UGA-3'\n______________GAAAC_UGC____GGCA_____CGC___GAAGAUUCGU\n______________|||||_|||____:|||_____|:|___:||:||||||\n______________CUUUG_ACG____UCGU_____GUG___UUUUUAAGCA\n3'-UUU...CCCUA_____A___AAU_____UCUUC___AAU__________AUGUG...CAA-5'\n_____________|______________________________________|\n_____________61_____________________________________23\n |
170 -- 176 |
24 -- 30 |
-22.9017 kcal/mol |
9.73835 kcal/mol |
6.27609 kcal/mol |
142 177@LB@ | |@LB@5'-UUU...GAACC GCCC UUCC C ACUUA...UGA-3'@LB@ GAAAC UGC GGCA CGC GAAGAUUCGU@LB@ ||||| ||| :||| |:| :||:||||||@LB@ CUUUG ACG UCGU GUG UUUUUAAGCA@LB@3'-UUU...CCCUA A AAU UCUUC AAU AUGUG...CAA-5'@LB@ | |@LB@ 61 23@LB@@LB@@LB@Energy -6.89 kcal/mol@LB@Hybridization Energy -22.9017 kcal/mol@LB@Unfolding Energy - mRNA 9.73835 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 143 -- 176@LB@Position - sRNA 24 -- 60@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 24 -- 30@LB@ |
13 |
0.0002543 |
0.06302 |
b3583 |
sgbE |
-8.82 |
0.035786 |
171 -- 191 |
39 -- 61 |
L-ribulose-5-phosphate 4-epimerase |
|
_____________170_____________________192\n_____________|_______________________|\n5'-CAA...UGGAU__________GUAU_________UGGAU...ACG-3'\n______________UGAAGC__GC____GCAGGAGGC\n______________||||:|__||____|||:||:||\n______________ACUUUG__CG____CGUUCUUCG\n3'-UUU...GCCCU______AA__AAUU_________UGAAU...CAA-5'\n_____________|_______________________|\n_____________62______________________38\n |
185 -- 191 |
39 -- 45 |
-21.2799 kcal/mol |
5.20492 kcal/mol |
7.25518 kcal/mol |
170 192@LB@ | |@LB@5'-CAA...UGGAU GUAU UGGAU...ACG-3'@LB@ UGAAGC GC GCAGGAGGC@LB@ ||||:| || |||:||:||@LB@ ACUUUG CG CGUUCUUCG@LB@3'-UUU...GCCCU AA AAUU UGAAU...CAA-5'@LB@ | |@LB@ 62 38@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -21.2799 kcal/mol@LB@Unfolding Energy - mRNA 5.20492 kcal/mol@LB@Unfolding Energy - sRNA 7.25518 kcal/mol@LB@@LB@Position - mRNA 171 -- 191@LB@Position - sRNA 39 -- 61@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 39 -- 45@LB@ |
165 |
0.01827 |
0.3566 |
b2937 |
speB |
-7.30 |
0.092452 |
5 -- 22 |
25 -- 41 |
agmatinase |
|
_____________4__________________23\n_____________|__________________|\n_______5'-CAAC___UC_____________AGGCA...CAG-3'\n______________AGU__CUUGAAGAGUUCG\n______________||:__|||:||:|:||||\n______________UCG__GAAUUUUUUAAGC\n3'-UUU...GUUCU___U______________AAUGU...CAA-5'\n_____________|__________________|\n_____________42_________________24\n |
16 -- 22 |
25 -- 31 |
-14.9284 kcal/mol |
5.98061 kcal/mol |
1.64839 kcal/mol |
4 23@LB@ | |@LB@ 5'-CAAC UC AGGCA...CAG-3'@LB@ AGU CUUGAAGAGUUCG@LB@ ||: |||:||:|:||||@LB@ UCG GAAUUUUUUAAGC@LB@3'-UUU...GUUCU U AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -7.30 kcal/mol@LB@Hybridization Energy -14.9284 kcal/mol@LB@Unfolding Energy - mRNA 5.98061 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 5 -- 22@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 25 -- 31@LB@ |
68 |
0.003533 |
0.1645 |
b3650 |
spoT |
-9.27 |
0.026581 |
116 -- 140 |
36 -- 60 |
bifunctional (p)ppGpp synthetase II/ guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase |
|
_____________115________________________141\n_____________|__________________________|\n5'-UAG...CGCCA_____A___AA___________C___GAAUU...CUC-3'\n______________GGAAC__GC__GAGCAGGAAGC_GCU\n______________|:|||__||__:||||:|||||_:||\n______________CUUUG__CG__UUCGUUCUUCG_UGA\n3'-UUU...CCCUA_____AA__AA_______________AUUUU...CAA-5'\n_____________|__________________________|\n_____________61_________________________35\n |
130 -- 136 |
39 -- 45 |
-24.6059 kcal/mol |
9.08429 kcal/mol |
6.24973 kcal/mol |
115 141@LB@ | |@LB@5'-UAG...CGCCA A AA C GAAUU...CUC-3'@LB@ GGAAC GC GAGCAGGAAGC GCU@LB@ |:||| || :||||:||||| :||@LB@ CUUUG CG UUCGUUCUUCG UGA@LB@3'-UUU...CCCUA AA AA AUUUU...CAA-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -24.6059 kcal/mol@LB@Unfolding Energy - mRNA 9.08429 kcal/mol@LB@Unfolding Energy - sRNA 6.24973 kcal/mol@LB@@LB@Position - mRNA 116 -- 140@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 39 -- 45@LB@ |