| 28 |
0.005242 |
0.6024 |
b0785 |
moaE |
-11.01 |
0.025514 |
211 -- 232 |
52 -- 74 |
molybdopterin synthase large subunit |
|
_____________210_____________________233\n_____________|_______________________|\n5'-AGA...AGAAA____A__________________GCCGU...CCU-3'\n______________CCAA_AUUGUUGUUGGUCCG_CA\n______________||||_||:|:|:||||:|||_||\n______________GGUU_UAGCGAUAACCGGGC_GU\n3'-UUU...UUACC____A_______________A__UUCUC...ACA-5'\n_____________|_______________________|\n_____________75______________________51\n |
216 -- 222 |
63 -- 69 |
-28.4518 kcal/mol |
6.10798 kcal/mol |
11.3304 kcal/mol |
210 233@LB@ | |@LB@5'-AGA...AGAAA A GCCGU...CCU-3'@LB@ CCAA AUUGUUGUUGGUCCG CA@LB@ |||| ||:|:|:||||:||| ||@LB@ GGUU UAGCGAUAACCGGGC GU@LB@3'-UUU...UUACC A A UUCUC...ACA-5'@LB@ | |@LB@ 75 51@LB@@LB@@LB@Energy -11.01 kcal/mol@LB@Hybridization Energy -28.4518 kcal/mol@LB@Unfolding Energy - mRNA 6.10798 kcal/mol@LB@Unfolding Energy - sRNA 11.3304 kcal/mol@LB@@LB@Position - mRNA 211 -- 232@LB@Position - sRNA 52 -- 74@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 64 |
0.01382 |
0.6177 |
b3250 |
mreC |
-10.24 |
0.036759 |
206 -- 229 |
53 -- 75 |
cell wall structural complex MreBCD transmembrane component MreC |
|
_____________205_______________________230\n_____________|_________________________|\n5'-GAC...AUGAA______UUUUA__CG__________GCUAC...GGA-3'\n______________GCCAAU_____GC___UGGCCCGUC\n______________||||||_____||___|||||||||\n______________CGGUUA_____CG___ACCGGGCAG\n3'-UUU...UUUAC______UAG____AUA_________UUUCU...ACA-5'\n_____________|_________________________|\n_____________76________________________52\n |
223 -- 229 |
53 -- 59 |
-27.5071 kcal/mol |
5.94491 kcal/mol |
11.3228 kcal/mol |
205 230@LB@ | |@LB@5'-GAC...AUGAA UUUUA CG GCUAC...GGA-3'@LB@ GCCAAU GC UGGCCCGUC@LB@ |||||| || |||||||||@LB@ CGGUUA CG ACCGGGCAG@LB@3'-UUU...UUUAC UAG AUA UUUCU...ACA-5'@LB@ | |@LB@ 76 52@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -27.5071 kcal/mol@LB@Unfolding Energy - mRNA 5.94491 kcal/mol@LB@Unfolding Energy - sRNA 11.3228 kcal/mol@LB@@LB@Position - mRNA 206 -- 229@LB@Position - sRNA 53 -- 75@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 178 |
0.03627 |
0.6177 |
b0924 |
mukB |
-9.59 |
0.049840 |
186 -- 195 |
44 -- 53 |
chromosome condensin MukBEF ATPase and DNA-binding subunit |
|
_____________185________196\n_____________|__________|\n5'-UGG...GAUAG__________GAAUA...CUG-3'\n______________CGGAGAGGAA\n______________|::|||||||\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
189 -- 195 |
44 -- 50 |
-13.8471 kcal/mol |
3.32824 kcal/mol |
0.927997 kcal/mol |
185 196@LB@ | |@LB@5'-UGG...GAUAG GAAUA...CUG-3'@LB@ CGGAGAGGAA@LB@ |::|||||||@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -13.8471 kcal/mol@LB@Unfolding Energy - mRNA 3.32824 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 50 |
0.009706 |
0.6129 |
b0109 |
nadC |
-3.48 |
0.624399 |
8 -- 15 |
22 -- 29 |
quinolinate phosphoribosyltransferase |
|
_____________7________16\n_____________|________|\n____5'-AGGCUAA________ACCAC...AAG-3'\n______________UAUUGUGC\n______________||||:|||\n______________AUAAUACG\n3'-UUU...AAAUA________GCAGU...ACA-5'\n_____________|________|\n_____________30_______21\n |
9 -- 15 |
22 -- 28 |
-7.42611 kcal/mol |
1.02369 kcal/mol |
2.92038 kcal/mol |
7 16@LB@ | |@LB@ 5'-AGGCUAA ACCAC...AAG-3'@LB@ UAUUGUGC@LB@ ||||:|||@LB@ AUAAUACG@LB@3'-UUU...AAAUA GCAGU...ACA-5'@LB@ | |@LB@ 30 21@LB@@LB@@LB@Energy -3.48 kcal/mol@LB@Hybridization Energy -7.42611 kcal/mol@LB@Unfolding Energy - mRNA 1.02369 kcal/mol@LB@Unfolding Energy - sRNA 2.92038 kcal/mol@LB@@LB@Position - mRNA 8 -- 15@LB@Position - sRNA 22 -- 29@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 41 |
0.008018 |
0.6129 |
b1740 |
nadE |
-11.27 |
0.022577 |
258 -- 272 |
38 -- 52 |
NAD synthetase NH3/glutamine-dependent |
|
_____________257_____________273\n_____________|_______________|\n5'-UUC...AUGCU_________A_____CGUAG...ACC-3'\n______________GAAGAGGAA_UUCGU\n______________:||||||||_|||:|\n______________UUUCUCCUU_AAGUA\n3'-UUU...GGCAG_________A_____AAAAA...ACA-5'\n_____________|_______________|\n_____________53______________37\n |
260 -- 266 |
44 -- 50 |
-15.8385 kcal/mol |
3.49717 kcal/mol |
1.0693 kcal/mol |
257 273@LB@ | |@LB@5'-UUC...AUGCU A CGUAG...ACC-3'@LB@ GAAGAGGAA UUCGU@LB@ :|||||||| |||:|@LB@ UUUCUCCUU AAGUA@LB@3'-UUU...GGCAG A AAAAA...ACA-5'@LB@ | |@LB@ 53 37@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -15.8385 kcal/mol@LB@Unfolding Energy - mRNA 3.49717 kcal/mol@LB@Unfolding Energy - sRNA 1.0693 kcal/mol@LB@@LB@Position - mRNA 258 -- 272@LB@Position - sRNA 38 -- 52@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 82 |
0.01753 |
0.6177 |
b2204 |
napH |
-9.88 |
0.043521 |
152 -- 162 |
42 -- 52 |
ferredoxin-type protein |
|
_____________151_________163\n_____________|___________|\n5'-CAC...UGGCG___________AGGUC...UCU-3'\n______________AAAGGGGAGUU\n______________||||:|||:||\n______________UUUCUCCUUAA\n3'-UUU...GGCAG___________AGUAA...ACA-5'\n_____________|___________|\n_____________53__________41\n |
156 -- 162 |
42 -- 48 |
-12.4472 kcal/mol |
1.70007 kcal/mol |
0.866923 kcal/mol |
151 163@LB@ | |@LB@5'-CAC...UGGCG AGGUC...UCU-3'@LB@ AAAGGGGAGUU@LB@ ||||:|||:||@LB@ UUUCUCCUUAA@LB@3'-UUU...GGCAG AGUAA...ACA-5'@LB@ | |@LB@ 53 41@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -12.4472 kcal/mol@LB@Unfolding Energy - mRNA 1.70007 kcal/mol@LB@Unfolding Energy - sRNA 0.866923 kcal/mol@LB@@LB@Position - mRNA 152 -- 162@LB@Position - sRNA 42 -- 52@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 40 |
0.007925 |
0.6129 |
b1109 |
ndh |
-7.04 |
0.160101 |
187 -- 195 |
46 -- 54 |
respiratory NADH dehydrogenase 2/cupric reductase |
|
_____________186_______196\n_____________|_________|\n5'-UGU...UAAAU_________UCACG...AAG-3'\n______________UUAAGGGGG\n______________|:||:|:||\n______________AGUUUCUCC\n3'-UUU...CGGGC_________UUAAA...ACA-5'\n_____________|_________|\n_____________55________45\n |
189 -- 195 |
46 -- 52 |
-9.48398 kcal/mol |
1.51964 kcal/mol |
0.922697 kcal/mol |
186 196@LB@ | |@LB@5'-UGU...UAAAU UCACG...AAG-3'@LB@ UUAAGGGGG@LB@ |:||:|:||@LB@ AGUUUCUCC@LB@3'-UUU...CGGGC UUAAA...ACA-5'@LB@ | |@LB@ 55 45@LB@@LB@@LB@Energy -7.04 kcal/mol@LB@Hybridization Energy -9.48398 kcal/mol@LB@Unfolding Energy - mRNA 1.51964 kcal/mol@LB@Unfolding Energy - sRNA 0.922697 kcal/mol@LB@@LB@Position - mRNA 187 -- 195@LB@Position - sRNA 46 -- 54@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 199 |
0.0417 |
0.6177 |
b4070 |
nrfA |
-7.95 |
0.106497 |
2 -- 16 |
44 -- 55 |
nitrite reductase formate-dependent cytochrome |
|
_____________1_______________17\n_____________|_______________|\n__________5'-U___GAA_________GAUAC...CAA-3'\n______________GUU___AAAGAGGAA\n______________||:___|||||||||\n______________CAG___UUUCUCCUU\n3'-UUU...CCGGG_______________AAAGU...ACA-5'\n_____________|_______________|\n_____________56______________43\n |
10 -- 16 |
44 -- 50 |
-11.2989 kcal/mol |
2.40804 kcal/mol |
0.941432 kcal/mol |
1 17@LB@ | |@LB@ 5'-U GAA GAUAC...CAA-3'@LB@ GUU AAAGAGGAA@LB@ ||: |||||||||@LB@ CAG UUUCUCCUU@LB@3'-UUU...CCGGG AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -7.95 kcal/mol@LB@Hybridization Energy -11.2989 kcal/mol@LB@Unfolding Energy - mRNA 2.40804 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 2 -- 16@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 171 |
0.0346 |
0.6177 |
b1865 |
nudB |
-7.50 |
0.130652 |
189 -- 196 |
46 -- 53 |
dihydroneopterin triphosphate pyrophosphatase |
|
_____________188______197\n_____________|________|\n5'-UGA...GUCAA________CAGCG...CCG-3'\n______________CGAAGAGG\n______________|:||||||\n______________GUUUCUCC\n3'-UUU...GGGCA________UUAAA...ACA-5'\n_____________|________|\n_____________54_______45\n |
190 -- 196 |
46 -- 52 |
-10.7995 kcal/mol |
2.39118 kcal/mol |
0.910679 kcal/mol |
188 197@LB@ | |@LB@5'-UGA...GUCAA CAGCG...CCG-3'@LB@ CGAAGAGG@LB@ |:||||||@LB@ GUUUCUCC@LB@3'-UUU...GGGCA UUAAA...ACA-5'@LB@ | |@LB@ 54 45@LB@@LB@@LB@Energy -7.50 kcal/mol@LB@Hybridization Energy -10.7995 kcal/mol@LB@Unfolding Energy - mRNA 2.39118 kcal/mol@LB@Unfolding Energy - sRNA 0.910679 kcal/mol@LB@@LB@Position - mRNA 189 -- 196@LB@Position - sRNA 46 -- 53@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 194 |
0.04051 |
0.6177 |
b0814 |
ompX |
-6.96 |
0.165642 |
107 -- 118 |
50 -- 61 |
outer membrane protein X |
|
_____________106__________119\n_____________|____________|\n5'-CUG...UGAAA____________CAUCA...CAC-3'\n______________UGGCCCGUUAGA\n______________||||||||:|:|\n______________ACCGGGCAGUUU\n3'-UUU...CGAUA____________CUCCU...ACA-5'\n_____________|____________|\n_____________62___________49\n |
111 -- 117 |
51 -- 57 |
-20.1081 kcal/mol |
2.98628 kcal/mol |
10.1573 kcal/mol |
106 119@LB@ | |@LB@5'-CUG...UGAAA CAUCA...CAC-3'@LB@ UGGCCCGUUAGA@LB@ ||||||||:|:|@LB@ ACCGGGCAGUUU@LB@3'-UUU...CGAUA CUCCU...ACA-5'@LB@ | |@LB@ 62 49@LB@@LB@@LB@Energy -6.96 kcal/mol@LB@Hybridization Energy -20.1081 kcal/mol@LB@Unfolding Energy - mRNA 2.98628 kcal/mol@LB@Unfolding Energy - sRNA 10.1573 kcal/mol@LB@@LB@Position - mRNA 107 -- 118@LB@Position - sRNA 50 -- 61@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 51 -- 57@LB@ |
