| 95 |
0.01894 |
0.6177 |
b0407 |
yajC |
-8.94 |
0.067585 |
73 -- 105 |
45 -- 79 |
SecYEG protein translocase auxillary subunit |
|
_____________72___________________________________106\n_____________|____________________________________|\n5'-UCU...CGUUU______G___U_A___AA______A___________UAAAU...UUU-3'\n______________GAUGGC_GGU_U_CGC____GGCU__UUGAAGAGGG\n______________:|||||_::|_|_|||____|||:__|::||||||:\n______________UUACCG_UUA_A_GCG____CCGG__AGUUUCUCCU\n______3'-UUUUU______G___U_____AUAA____GC__________UAAAG...ACA-5'\n_____________|____________________________________|\n_____________80___________________________________44\n |
99 -- 105 |
45 -- 51 |
-30.8043 kcal/mol |
8.31146 kcal/mol |
13.5551 kcal/mol |
72 106@LB@ | |@LB@5'-UCU...CGUUU G U A AA A UAAAU...UUU-3'@LB@ GAUGGC GGU U CGC GGCU UUGAAGAGGG@LB@ :||||| ::| | ||| |||: |::||||||:@LB@ UUACCG UUA A GCG CCGG AGUUUCUCCU@LB@ 3'-UUUUU G U AUAA GC UAAAG...ACA-5'@LB@ | |@LB@ 80 44@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -30.8043 kcal/mol@LB@Unfolding Energy - mRNA 8.31146 kcal/mol@LB@Unfolding Energy - sRNA 13.5551 kcal/mol@LB@@LB@Position - mRNA 73 -- 105@LB@Position - sRNA 45 -- 79@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 1 |
0 |
0 |
b0481 |
ybaK |
-91.37 |
0.000000 |
1 -- 79 |
1 -- 79 |
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase |
|
______________1______________________________________________________________________________80\n______________|______________________________________________________________________________|\n___________5'-_______________________________________________________________________________AACUC...UCG-3'\n______________AAUGGCCAAUAUCGCUAUUGGCCCGUCAAAGAGGAAUUUCAUUUUUUUAUUAUUAUGCCGUCACUUUAAGCGACGGUGU\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UUACCGGUUAUAGCGAUAACCGGGCAGUUUCUCCUUAAAGUAAAAAAAUAAUAAUACGGCAGUGAAAUUCGCUGCCACA\n______3'-UUUUU_______________________________________________________________________________-5'\n_____________|______________________________________________________________________________|\n_____________80_____________________________________________________________________________1\n |
51 -- 57 |
23 -- 29 |
-143.199 kcal/mol |
26.5504 kcal/mol |
25.2758 kcal/mol |
1 80@LB@ | |@LB@ 5'- AACUC...UCG-3'@LB@ AAUGGCCAAUAUCGCUAUUGGCCCGUCAAAGAGGAAUUUCAUUUUUUUAUUAUUAUGCCGUCACUUUAAGCGACGGUGU@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UUACCGGUUAUAGCGAUAACCGGGCAGUUUCUCCUUAAAGUAAAAAAAUAAUAAUACGGCAGUGAAAUUCGCUGCCACA@LB@ 3'-UUUUU -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -91.37 kcal/mol@LB@Hybridization Energy -143.199 kcal/mol@LB@Unfolding Energy - mRNA 26.5504 kcal/mol@LB@Unfolding Energy - sRNA 25.2758 kcal/mol@LB@@LB@Position - mRNA 1 -- 79@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 156 |
0.03128 |
0.6177 |
b4512 |
ybdD |
-7.87 |
0.110479 |
26 -- 38 |
43 -- 55 |
DUF466 family protein |
|
_____________25____________39\n_____________|_____________|\n5'-GCA...UCAGA__G__________GUUGG...GGG-3'\n______________GU_AGGGGGGGAU\n______________||_|::|:||:||\n______________CA_UUUCUCCUUA\n3'-UUU...CCGGG__G__________AAGUA...ACA-5'\n_____________|_____________|\n_____________56____________42\n |
32 -- 38 |
43 -- 49 |
-14.3671 kcal/mol |
5.55181 kcal/mol |
0.946481 kcal/mol |
25 39@LB@ | |@LB@5'-GCA...UCAGA G GUUGG...GGG-3'@LB@ GU AGGGGGGGAU@LB@ || |::|:||:||@LB@ CA UUUCUCCUUA@LB@3'-UUU...CCGGG G AAGUA...ACA-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -7.87 kcal/mol@LB@Hybridization Energy -14.3671 kcal/mol@LB@Unfolding Energy - mRNA 5.55181 kcal/mol@LB@Unfolding Energy - sRNA 0.946481 kcal/mol@LB@@LB@Position - mRNA 26 -- 38@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 90 |
0.01863 |
0.6177 |
b0659 |
ybeY |
-9.29 |
0.057244 |
42 -- 51 |
47 -- 56 |
ssRNA-specific endoribonuclease; 16S rRNA 3' end maturation and quality control co-endoribonuclease working with RNase R; rRNA transcription antitermination factor |
|
_____________41_________52\n_____________|__________|\n5'-ACU...GCCGA__________AUCAG...CGC-3'\n______________UGUCGAAGAG\n______________:|||:|||||\n______________GCAGUUUCUC\n3'-UUU...ACCGG__________CUUAA...ACA-5'\n_____________|__________|\n_____________57_________46\n |
45 -- 51 |
47 -- 53 |
-13.0692 kcal/mol |
2.86289 kcal/mol |
0.911734 kcal/mol |
41 52@LB@ | |@LB@5'-ACU...GCCGA AUCAG...CGC-3'@LB@ UGUCGAAGAG@LB@ :|||:|||||@LB@ GCAGUUUCUC@LB@3'-UUU...ACCGG CUUAA...ACA-5'@LB@ | |@LB@ 57 46@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -13.0692 kcal/mol@LB@Unfolding Energy - mRNA 2.86289 kcal/mol@LB@Unfolding Energy - sRNA 0.911734 kcal/mol@LB@@LB@Position - mRNA 42 -- 51@LB@Position - sRNA 47 -- 56@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 170 |
0.03452 |
0.6177 |
b0792 |
ybhR |
-7.08 |
0.157577 |
208 -- 236 |
47 -- 69 |
putative ABC transporter permease |
|
_____________207____________________________237\n_____________|______________________________|\n5'-CAG...GUUUC______UA___ACGUUAA____________UUGCA...AGG-3'\n______________AUCGCU__UGG_______UCCG_CAAAGAG\n______________||||||__|||_______:|||_|||||||\n______________UAGCGA__ACC_______GGGC_GUUUCUC\n3'-UUU...GGUUA______UA______________A_______CUUAA...ACA-5'\n_____________|______________________________|\n_____________70_____________________________46\n |
230 -- 236 |
47 -- 53 |
-23.2437 kcal/mol |
4.95079 kcal/mol |
11.2154 kcal/mol |
207 237@LB@ | |@LB@5'-CAG...GUUUC UA ACGUUAA UUGCA...AGG-3'@LB@ AUCGCU UGG UCCG CAAAGAG@LB@ |||||| ||| :||| |||||||@LB@ UAGCGA ACC GGGC GUUUCUC@LB@3'-UUU...GGUUA UA A CUUAA...ACA-5'@LB@ | |@LB@ 70 46@LB@@LB@@LB@Energy -7.08 kcal/mol@LB@Hybridization Energy -23.2437 kcal/mol@LB@Unfolding Energy - mRNA 4.95079 kcal/mol@LB@Unfolding Energy - sRNA 11.2154 kcal/mol@LB@@LB@Position - mRNA 208 -- 236@LB@Position - sRNA 47 -- 69@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 133 |
0.02604 |
0.6177 |
b0876 |
ybjD |
-5.23 |
0.342712 |
179 -- 199 |
45 -- 55 |
putative OLD family ATP-dependent endonuclease; DUF2813 family protein |
|
_____________178___________________200\n_____________|_____________________|\n5'-CGU...GAUAA____CAUAUUUCUG_______UAUGA...GGG-3'\n______________GUCA__________GAGGGGA\n______________||||__________:||:|||\n______________CAGU__________UUCUCCU\n3'-UUU...CCGGG_____________________UAAAG...ACA-5'\n_____________|_____________________|\n_____________56____________________44\n |
193 -- 199 |
45 -- 51 |
-10.7419 kcal/mol |
4.58374 kcal/mol |
0.930875 kcal/mol |
178 200@LB@ | |@LB@5'-CGU...GAUAA CAUAUUUCUG UAUGA...GGG-3'@LB@ GUCA GAGGGGA@LB@ |||| :||:|||@LB@ CAGU UUCUCCU@LB@3'-UUU...CCGGG UAAAG...ACA-5'@LB@ | |@LB@ 56 44@LB@@LB@@LB@Energy -5.23 kcal/mol@LB@Hybridization Energy -10.7419 kcal/mol@LB@Unfolding Energy - mRNA 4.58374 kcal/mol@LB@Unfolding Energy - sRNA 0.930875 kcal/mol@LB@@LB@Position - mRNA 179 -- 199@LB@Position - sRNA 45 -- 55@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 5 |
0.0004437 |
0.2856 |
b0847 |
ybjL |
-12.50 |
0.012601 |
224 -- 253 |
26 -- 55 |
putative transporter |
|
_____________223____________________________254\n_____________|______________________________|\n5'-CUU...GAAUU______U_______A____CUG________UGUGG...GUU-3'\n______________GUUAAA_GGGAAUU_CAUU___UUAUUAUU\n______________||:|||_:||||||_||||___||||||||\n______________CAGUUU_UCCUUAA_GUAA___AAUAAUAA\n3'-UUU...CCGGG______C_______A____AAA________UACGG...ACA-5'\n_____________|______________________________|\n_____________56_____________________________25\n |
247 -- 253 |
26 -- 32 |
-19.6848 kcal/mol |
5.99374 kcal/mol |
1.18815 kcal/mol |
223 254@LB@ | |@LB@5'-CUU...GAAUU U A CUG UGUGG...GUU-3'@LB@ GUUAAA GGGAAUU CAUU UUAUUAUU@LB@ ||:||| :|||||| |||| ||||||||@LB@ CAGUUU UCCUUAA GUAA AAUAAUAA@LB@3'-UUU...CCGGG C A AAA UACGG...ACA-5'@LB@ | |@LB@ 56 25@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -19.6848 kcal/mol@LB@Unfolding Energy - mRNA 5.99374 kcal/mol@LB@Unfolding Energy - sRNA 1.18815 kcal/mol@LB@@LB@Position - mRNA 224 -- 253@LB@Position - sRNA 26 -- 55@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 131 |
0.02569 |
0.6177 |
b0848 |
ybjM |
-8.44 |
0.085177 |
187 -- 197 |
44 -- 55 |
inner membrane protein |
|
_____________186__________198\n_____________|____________|\n5'-GAA...GCAGU____________CGAGU...GGG-3'\n______________GUC_AGGAGGAA\n______________|||_|:||||||\n______________CAG_UUCUCCUU\n3'-UUU...CCGGG___U________AAAGU...ACA-5'\n_____________|____________|\n_____________56___________43\n |
191 -- 197 |
44 -- 50 |
-13.6185 kcal/mol |
4.23971 kcal/mol |
0.941432 kcal/mol |
186 198@LB@ | |@LB@5'-GAA...GCAGU CGAGU...GGG-3'@LB@ GUC AGGAGGAA@LB@ ||| |:||||||@LB@ CAG UUCUCCUU@LB@3'-UUU...CCGGG U AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -8.44 kcal/mol@LB@Hybridization Energy -13.6185 kcal/mol@LB@Unfolding Energy - mRNA 4.23971 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 187 -- 197@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 155 |
0.03087 |
0.6177 |
b1003 |
yccJ |
-9.03 |
0.064630 |
130 -- 145 |
43 -- 56 |
uncharacterized protein |
|
_____________129______________146\n_____________|________________|\n5'-CCU...UUGCU_____UC_________AUGUC...GGU-3'\n______________CGUUA__AAGGGGAAU\n______________|||:|__|||:|||||\n______________GCAGU__UUCUCCUUA\n3'-UUU...ACCGG________________AAGUA...ACA-5'\n_____________|________________|\n_____________57_______________42\n |
139 -- 145 |
43 -- 49 |
-13.8314 kcal/mol |
3.84343 kcal/mol |
0.953958 kcal/mol |
129 146@LB@ | |@LB@5'-CCU...UUGCU UC AUGUC...GGU-3'@LB@ CGUUA AAGGGGAAU@LB@ |||:| |||:|||||@LB@ GCAGU UUCUCCUUA@LB@3'-UUU...ACCGG AAGUA...ACA-5'@LB@ | |@LB@ 57 42@LB@@LB@@LB@Energy -9.03 kcal/mol@LB@Hybridization Energy -13.8314 kcal/mol@LB@Unfolding Energy - mRNA 3.84343 kcal/mol@LB@Unfolding Energy - sRNA 0.953958 kcal/mol@LB@@LB@Position - mRNA 130 -- 145@LB@Position - sRNA 43 -- 56@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 198 |
0.04148 |
0.6177 |
b1067 |
yceH |
-6.24 |
0.226874 |
185 -- 202 |
38 -- 56 |
UPF0502 family protein |
|
_____________184_________________203\n_____________|___________________|\n5'-GCA...CCGGC__C___________C____GAAAU...GUG-3'\n______________CG_UAAGGAG_AAU_UCAU\n______________||_:||:|||_|||_||||\n______________GC_GUUUCUC_UUA_AGUA\n3'-UUU...ACCGG__A_______C___A____AAAAA...ACA-5'\n_____________|___________________|\n_____________57__________________37\n |
188 -- 194 |
47 -- 53 |
-10.8881 kcal/mol |
3.47135 kcal/mol |
1.17918 kcal/mol |
184 203@LB@ | |@LB@5'-GCA...CCGGC C C GAAAU...GUG-3'@LB@ CG UAAGGAG AAU UCAU@LB@ || :||:||| ||| ||||@LB@ GC GUUUCUC UUA AGUA@LB@3'-UUU...ACCGG A C A AAAAA...ACA-5'@LB@ | |@LB@ 57 37@LB@@LB@@LB@Energy -6.24 kcal/mol@LB@Hybridization Energy -10.8881 kcal/mol@LB@Unfolding Energy - mRNA 3.47135 kcal/mol@LB@Unfolding Energy - sRNA 1.17918 kcal/mol@LB@@LB@Position - mRNA 185 -- 202@LB@Position - sRNA 38 -- 56@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 47 -- 53@LB@ |
