128 |
0.02532 |
0.6177 |
b3642 |
pyrE |
-8.06 |
0.101423 |
72 -- 92 |
43 -- 68 |
orotate phosphoribosyltransferase |
|
_____________71_________________________93\n_____________|__________________________|\n5'-CGG...CUUGU_G___C____________________CGAAU...AUU-3'\n______________U_GCU__UGGCCCG____AGGGGAAU\n______________|_|||__|||||||____||:|||||\n______________A_CGA__ACCGGGC____UCUCCUUA\n3'-UUU...GUUAU_G___UA_______AGUU________AAGUA...ACA-5'\n_____________|__________________________|\n_____________69_________________________42\n |
86 -- 92 |
43 -- 49 |
-26.5136 kcal/mol |
7.12642 kcal/mol |
11.3306 kcal/mol |
71 93@LB@ | |@LB@5'-CGG...CUUGU G C CGAAU...AUU-3'@LB@ U GCU UGGCCCG AGGGGAAU@LB@ | ||| ||||||| ||:|||||@LB@ A CGA ACCGGGC UCUCCUUA@LB@3'-UUU...GUUAU G UA AGUU AAGUA...ACA-5'@LB@ | |@LB@ 69 42@LB@@LB@@LB@Energy -8.06 kcal/mol@LB@Hybridization Energy -26.5136 kcal/mol@LB@Unfolding Energy - mRNA 7.12642 kcal/mol@LB@Unfolding Energy - sRNA 11.3306 kcal/mol@LB@@LB@Position - mRNA 72 -- 92@LB@Position - sRNA 43 -- 68@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 43 -- 49@LB@ |
69 |
0.01434 |
0.6177 |
b0551 |
quuD |
-6.03 |
0.248082 |
117 -- 124 |
48 -- 55 |
DLP12 prophage; putative antitermination protein |
|
_____________116______125\n_____________|________|\n5'-ACU...AUGAA________UAACA...GAU-3'\n______________GUCAGAGA\n______________||||:|||\n______________CAGUUUCU\n3'-UUU...CCGGG________CCUUA...ACA-5'\n_____________|________|\n_____________56_______47\n |
118 -- 124 |
48 -- 54 |
-9.27195 kcal/mol |
2.92769 kcal/mol |
0.318869 kcal/mol |
116 125@LB@ | |@LB@5'-ACU...AUGAA UAACA...GAU-3'@LB@ GUCAGAGA@LB@ ||||:|||@LB@ CAGUUUCU@LB@3'-UUU...CCGGG CCUUA...ACA-5'@LB@ | |@LB@ 56 47@LB@@LB@@LB@Energy -6.03 kcal/mol@LB@Hybridization Energy -9.27195 kcal/mol@LB@Unfolding Energy - mRNA 2.92769 kcal/mol@LB@Unfolding Energy - sRNA 0.318869 kcal/mol@LB@@LB@Position - mRNA 117 -- 124@LB@Position - sRNA 48 -- 55@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 48 -- 54@LB@ |
71 |
0.01472 |
0.6177 |
b0846 |
rcdA |
-10.28 |
0.035999 |
187 -- 195 |
44 -- 52 |
transcriptional regulator of csgD and ybiJI; autoregulator |
|
_____________186_______196\n_____________|_________|\n5'-GCG...UGCAG_________AUGAC...AAA-3'\n______________AGAGAGGAA\n______________|:|||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
189 -- 195 |
44 -- 50 |
-11.6116 kcal/mol |
0.46711 kcal/mol |
0.860683 kcal/mol |
186 196@LB@ | |@LB@5'-GCG...UGCAG AUGAC...AAA-3'@LB@ AGAGAGGAA@LB@ |:|||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -10.28 kcal/mol@LB@Hybridization Energy -11.6116 kcal/mol@LB@Unfolding Energy - mRNA 0.46711 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 187 -- 195@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 44 -- 50@LB@ |
31 |
0.005902 |
0.6127 |
b1951 |
rcsA |
-8.09 |
0.100100 |
163 -- 178 |
37 -- 51 |
transcriptional regulator of colanic acid capsular biosynthesis |
|
_____________162______________179\n_____________|________________|\n5'-GUU...CAGGU__________A_____ACGCA...UUG-3'\n______________AAGGGGAAUU_UCGUU\n______________|||:||||||_||:||\n______________UUCUCCUUAA_AGUAA\n3'-UUU...GCAGU________________AAAAA...ACA-5'\n_____________|________________|\n_____________52_______________36\n |
166 -- 172 |
42 -- 48 |
-14.3412 kcal/mol |
5.18535 kcal/mol |
1.07049 kcal/mol |
162 179@LB@ | |@LB@5'-GUU...CAGGU A ACGCA...UUG-3'@LB@ AAGGGGAAUU UCGUU@LB@ |||:|||||| ||:||@LB@ UUCUCCUUAA AGUAA@LB@3'-UUU...GCAGU AAAAA...ACA-5'@LB@ | |@LB@ 52 36@LB@@LB@@LB@Energy -8.09 kcal/mol@LB@Hybridization Energy -14.3412 kcal/mol@LB@Unfolding Energy - mRNA 5.18535 kcal/mol@LB@Unfolding Energy - sRNA 1.07049 kcal/mol@LB@@LB@Position - mRNA 163 -- 178@LB@Position - sRNA 37 -- 51@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 42 -- 48@LB@ |
192 |
0.04008 |
0.6177 |
b2822 |
recC |
-5.02 |
0.370915 |
179 -- 195 |
44 -- 57 |
exonuclease V (RecBCD complex) gamma chain |
|
_____________178_______________196\n_____________|_________________|\n5'-AGU...CCGAA_______U__UC_____CCGCU...AGA-3'\n______________UCGUCAG_AG__AGGAG\n______________:|||||:_||__||||:\n______________GGCAGUU_UC__UCCUU\n3'-UUU...AACCG_________________AAAGU...ACA-5'\n_____________|_________________|\n_____________58________________43\n |
179 -- 185 |
51 -- 57 |
-11.1502 kcal/mol |
3.39036 kcal/mol |
2.73756 kcal/mol |
178 196@LB@ | |@LB@5'-AGU...CCGAA U UC CCGCU...AGA-3'@LB@ UCGUCAG AG AGGAG@LB@ :|||||: || ||||:@LB@ GGCAGUU UC UCCUU@LB@3'-UUU...AACCG AAAGU...ACA-5'@LB@ | |@LB@ 58 43@LB@@LB@@LB@Energy -5.02 kcal/mol@LB@Hybridization Energy -11.1502 kcal/mol@LB@Unfolding Energy - mRNA 3.39036 kcal/mol@LB@Unfolding Energy - sRNA 2.73756 kcal/mol@LB@@LB@Position - mRNA 179 -- 195@LB@Position - sRNA 44 -- 57@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 51 -- 57@LB@ |
58 |
0.01235 |
0.6177 |
b3903 |
rhaA |
-9.27 |
0.057813 |
267 -- 276 |
46 -- 55 |
L-rhamnose isomerase |
|
_____________266________277\n_____________|__________|\n5'-GCC...UUGAU__________CGCUG...UAC-3'\n______________GUCGAGGAGG\n______________|||:|:||||\n______________CAGUUUCUCC\n3'-UUU...CCGGG__________UUAAA...ACA-5'\n_____________|__________|\n_____________56_________45\n |
270 -- 276 |
46 -- 52 |
-15.3197 kcal/mol |
5.12197 kcal/mol |
0.924411 kcal/mol |
266 277@LB@ | |@LB@5'-GCC...UUGAU CGCUG...UAC-3'@LB@ GUCGAGGAGG@LB@ |||:|:||||@LB@ CAGUUUCUCC@LB@3'-UUU...CCGGG UUAAA...ACA-5'@LB@ | |@LB@ 56 45@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -15.3197 kcal/mol@LB@Unfolding Energy - mRNA 5.12197 kcal/mol@LB@Unfolding Energy - sRNA 0.924411 kcal/mol@LB@@LB@Position - mRNA 267 -- 276@LB@Position - sRNA 46 -- 55@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 46 -- 52@LB@ |
88 |
0.01799 |
0.6177 |
b0415 |
ribE |
-8.66 |
0.076826 |
57 -- 64 |
47 -- 54 |
riboflavin synthase beta chain |
|
_____________56_______65\n_____________|________|\n5'-CGG...UAAAU________AUACG...GUG-3'\n______________UCAAAGAG\n______________||||||||\n______________AGUUUCUC\n3'-UUU...CGGGC________CUUAA...ACA-5'\n_____________|________|\n_____________55_______46\n |
58 -- 64 |
47 -- 53 |
-10.4141 kcal/mol |
0.855178 kcal/mol |
0.897871 kcal/mol |
56 65@LB@ | |@LB@5'-CGG...UAAAU AUACG...GUG-3'@LB@ UCAAAGAG@LB@ ||||||||@LB@ AGUUUCUC@LB@3'-UUU...CGGGC CUUAA...ACA-5'@LB@ | |@LB@ 55 46@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -10.4141 kcal/mol@LB@Unfolding Energy - mRNA 0.855178 kcal/mol@LB@Unfolding Energy - sRNA 0.897871 kcal/mol@LB@@LB@Position - mRNA 57 -- 64@LB@Position - sRNA 47 -- 54@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 47 -- 53@LB@ |
85 |
0.01786 |
0.6177 |
b1427 |
rimL |
-14.01 |
0.006161 |
123 -- 133 |
46 -- 56 |
ribosomal-protein-L7/L12-serine acetyltransferase |
|
_____________122_________134\n_____________|___________|\n5'-GAU...GAGAG___________UGUAA...CCU-3'\n______________CGUCAAAGAGG\n______________|||||||||||\n______________GCAGUUUCUCC\n3'-UUU...ACCGG___________UUAAA...ACA-5'\n_____________|___________|\n_____________57__________45\n |
127 -- 133 |
46 -- 52 |
-17.3934 kcal/mol |
2.45026 kcal/mol |
0.93204 kcal/mol |
122 134@LB@ | |@LB@5'-GAU...GAGAG UGUAA...CCU-3'@LB@ CGUCAAAGAGG@LB@ |||||||||||@LB@ GCAGUUUCUCC@LB@3'-UUU...ACCGG UUAAA...ACA-5'@LB@ | |@LB@ 57 45@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -17.3934 kcal/mol@LB@Unfolding Energy - mRNA 2.45026 kcal/mol@LB@Unfolding Energy - sRNA 0.93204 kcal/mol@LB@@LB@Position - mRNA 123 -- 133@LB@Position - sRNA 46 -- 56@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 46 -- 52@LB@ |
87 |
0.01794 |
0.6177 |
b3499 |
rlmJ |
-10.99 |
0.025859 |
12 -- 21 |
46 -- 55 |
23S rRNA m(6)A2030 methyltransferase SAM-dependent |
|
_____________11_________22\n_____________|__________|\n5'-GCG...UCCUG__________UUAAG...AUA-3'\n______________GUUAAAGAGG\n______________||:|||||||\n______________CAGUUUCUCC\n3'-UUU...CCGGG__________UUAAA...ACA-5'\n_____________|__________|\n_____________56_________45\n |
15 -- 21 |
46 -- 52 |
-14.3615 kcal/mol |
2.45195 kcal/mol |
0.924411 kcal/mol |
11 22@LB@ | |@LB@5'-GCG...UCCUG UUAAG...AUA-3'@LB@ GUUAAAGAGG@LB@ ||:|||||||@LB@ CAGUUUCUCC@LB@3'-UUU...CCGGG UUAAA...ACA-5'@LB@ | |@LB@ 56 45@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -14.3615 kcal/mol@LB@Unfolding Energy - mRNA 2.45195 kcal/mol@LB@Unfolding Energy - sRNA 0.924411 kcal/mol@LB@@LB@Position - mRNA 12 -- 21@LB@Position - sRNA 46 -- 55@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 46 -- 52@LB@ |
46 |
0.009202 |
0.6129 |
b0183 |
rnhB |
-8.44 |
0.085048 |
25 -- 32 |
48 -- 55 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
_____________24_______33\n_____________|________|\n5'-AAU...AGUUA________AUUAU...UCC-3'\n______________GUCAAAGA\n______________||||||||\n______________CAGUUUCU\n3'-UUU...CCGGG________CCUUA...ACA-5'\n_____________|________|\n_____________56_______47\n |
26 -- 32 |
48 -- 54 |
-9.30452 kcal/mol |
0.544993 kcal/mol |
0.318869 kcal/mol |
24 33@LB@ | |@LB@5'-AAU...AGUUA AUUAU...UCC-3'@LB@ GUCAAAGA@LB@ ||||||||@LB@ CAGUUUCU@LB@3'-UUU...CCGGG CCUUA...ACA-5'@LB@ | |@LB@ 56 47@LB@@LB@@LB@Energy -8.44 kcal/mol@LB@Hybridization Energy -9.30452 kcal/mol@LB@Unfolding Energy - mRNA 0.544993 kcal/mol@LB@Unfolding Energy - sRNA 0.318869 kcal/mol@LB@@LB@Position - mRNA 25 -- 32@LB@Position - sRNA 48 -- 55@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 48 -- 54@LB@ |