118 |
0.0238 |
0.6177 |
b3321 |
rpsJ |
-9.75 |
0.046314 |
151 -- 177 |
30 -- 55 |
30S ribosomal subunit protein S10 |
|
_____________150___________________________178\n_____________|_____________________________|\n5'-UUC...AAUGG___U_________AA_______CG_____AAAAU...GUG-3'\n______________GUC___GAGGAGU__UCAUUUU__UUUAU\n______________|||___|||||:|__|||||||__|||||\n______________CAG___CUCCUUA__AGUAAAA__AAAUA\n3'-UUU...CCGGG___UUU_______A_______________AUAAU...ACA-5'\n_____________|_____________________________|\n_____________56____________________________29\n |
164 -- 170 |
35 -- 41 |
-16.2369 kcal/mol |
5.30163 kcal/mol |
1.18773 kcal/mol |
150 178@LB@ | |@LB@5'-UUC...AAUGG U AA CG AAAAU...GUG-3'@LB@ GUC GAGGAGU UCAUUUU UUUAU@LB@ ||| |||||:| ||||||| |||||@LB@ CAG CUCCUUA AGUAAAA AAAUA@LB@3'-UUU...CCGGG UUU A AUAAU...ACA-5'@LB@ | |@LB@ 56 29@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -16.2369 kcal/mol@LB@Unfolding Energy - mRNA 5.30163 kcal/mol@LB@Unfolding Energy - sRNA 1.18773 kcal/mol@LB@@LB@Position - mRNA 151 -- 177@LB@Position - sRNA 30 -- 55@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 35 -- 41@LB@ |
152 |
0.03059 |
0.6177 |
b2609 |
rpsP |
-6.70 |
0.186060 |
187 -- 203 |
23 -- 53 |
30S ribosomal subunit protein S16 |
|
_____________186______________________________204\n_____________|________________________________|\n5'-UCA...AUUCA__C_____________________________GUAAC...UCG-3'\n______________CA_AAGAGGA_______________UGUUAUG\n______________||_|||||||_______________|:|||||\n______________GU_UUCUCCU_______________AUAAUAC\n3'-UUU...GGGCA__________UAAAGUAAAAAAAUA_______GGCAG...ACA-5'\n_____________|________________________________|\n_____________54_______________________________22\n |
197 -- 203 |
23 -- 29 |
-10.7305 kcal/mol |
2.84664 kcal/mol |
1.18482 kcal/mol |
186 204@LB@ | |@LB@5'-UCA...AUUCA C GUAAC...UCG-3'@LB@ CA AAGAGGA UGUUAUG@LB@ || ||||||| |:|||||@LB@ GU UUCUCCU AUAAUAC@LB@3'-UUU...GGGCA UAAAGUAAAAAAAUA GGCAG...ACA-5'@LB@ | |@LB@ 54 22@LB@@LB@@LB@Energy -6.70 kcal/mol@LB@Hybridization Energy -10.7305 kcal/mol@LB@Unfolding Energy - mRNA 2.84664 kcal/mol@LB@Unfolding Energy - sRNA 1.18482 kcal/mol@LB@@LB@Position - mRNA 187 -- 203@LB@Position - sRNA 23 -- 53@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 23 -- 29@LB@ |
173 |
0.03478 |
0.6177 |
b1234 |
rssA |
-4.70 |
0.418234 |
181 -- 188 |
43 -- 50 |
putative patatin-like family phospholipase |
|
_____________180______189\n_____________|________|\n5'-GAU...AUUCC________CUUGC...AAA-3'\n______________AGGGGAAU\n______________||:|||||\n______________UCUCCUUA\n3'-UUU...CAGUU________AAGUA...ACA-5'\n_____________|________|\n_____________51_______42\n |
182 -- 188 |
43 -- 49 |
-9.05148 kcal/mol |
3.5051 kcal/mol |
0.845564 kcal/mol |
180 189@LB@ | |@LB@5'-GAU...AUUCC CUUGC...AAA-3'@LB@ AGGGGAAU@LB@ ||:|||||@LB@ UCUCCUUA@LB@3'-UUU...CAGUU AAGUA...ACA-5'@LB@ | |@LB@ 51 42@LB@@LB@@LB@Energy -4.70 kcal/mol@LB@Hybridization Energy -9.05148 kcal/mol@LB@Unfolding Energy - mRNA 3.5051 kcal/mol@LB@Unfolding Energy - sRNA 0.845564 kcal/mol@LB@@LB@Position - mRNA 181 -- 188@LB@Position - sRNA 43 -- 50@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 43 -- 49@LB@ |
163 |
0.03345 |
0.6177 |
b1235 |
rssB |
-5.20 |
0.346272 |
186 -- 195 |
44 -- 55 |
PcnB-degradosome interaction factor; response regulator |
|
_____________185__________196\n_____________|____________|\n5'-AAU...AGCCA____________AGAAC...CAA-3'\n______________GUC__AGGGGAG\n______________|||__||:|||:\n______________CAG__UCUCCUU\n3'-UUU...CCGGG___UU_______AAAGU...ACA-5'\n_____________|____________|\n_____________56___________43\n |
189 -- 195 |
44 -- 50 |
-10.1709 kcal/mol |
4.02871 kcal/mol |
0.941432 kcal/mol |
185 196@LB@ | |@LB@5'-AAU...AGCCA AGAAC...CAA-3'@LB@ GUC AGGGGAG@LB@ ||| ||:|||:@LB@ CAG UCUCCUU@LB@3'-UUU...CCGGG UU AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -5.20 kcal/mol@LB@Hybridization Energy -10.1709 kcal/mol@LB@Unfolding Energy - mRNA 4.02871 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 44 -- 50@LB@ |
161 |
0.03295 |
0.6177 |
b1630 |
rsxD |
-5.86 |
0.265655 |
34 -- 42 |
49 -- 57 |
SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex |
|
_____________33________43\n_____________|_________|\n5'-AGC...AGCUG_________CGGCU...CAG-3'\n______________CCGUCGAAG\n______________|||||:|||\n______________GGCAGUUUC\n3'-UUU...AACCG_________UCCUU...ACA-5'\n_____________|_________|\n_____________58________48\n |
36 -- 42 |
49 -- 55 |
-12.0908 kcal/mol |
3.50131 kcal/mol |
2.72876 kcal/mol |
33 43@LB@ | |@LB@5'-AGC...AGCUG CGGCU...CAG-3'@LB@ CCGUCGAAG@LB@ |||||:|||@LB@ GGCAGUUUC@LB@3'-UUU...AACCG UCCUU...ACA-5'@LB@ | |@LB@ 58 48@LB@@LB@@LB@Energy -5.86 kcal/mol@LB@Hybridization Energy -12.0908 kcal/mol@LB@Unfolding Energy - mRNA 3.50131 kcal/mol@LB@Unfolding Energy - sRNA 2.72876 kcal/mol@LB@@LB@Position - mRNA 34 -- 42@LB@Position - sRNA 49 -- 57@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 49 -- 55@LB@ |
182 |
0.03771 |
0.6177 |
b0397 |
sbcC |
-11.00 |
0.025718 |
84 -- 100 |
39 -- 56 |
exonuclease dsDNA ATP-dependent |
|
_____________83_________________101\n_____________|__________________|\n5'-GAA...CUCAG___________UG_____AUCGC...UUG-3'\n______________CGUCGAAGAGG___UUCA\n______________||||:||||||___||||\n______________GCAGUUUCUCC___AAGU\n3'-UUU...ACCGG___________UUA____AAAAA...ACA-5'\n_____________|__________________|\n_____________57_________________38\n |
88 -- 94 |
46 -- 52 |
-19.0672 kcal/mol |
6.9127 kcal/mol |
1.15786 kcal/mol |
83 101@LB@ | |@LB@5'-GAA...CUCAG UG AUCGC...UUG-3'@LB@ CGUCGAAGAGG UUCA@LB@ ||||:|||||| ||||@LB@ GCAGUUUCUCC AAGU@LB@3'-UUU...ACCGG UUA AAAAA...ACA-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -19.0672 kcal/mol@LB@Unfolding Energy - mRNA 6.9127 kcal/mol@LB@Unfolding Energy - sRNA 1.15786 kcal/mol@LB@@LB@Position - mRNA 84 -- 100@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 46 -- 52@LB@ |
112 |
0.02248 |
0.6177 |
b2796 |
sdaC |
-8.62 |
0.078257 |
115 -- 131 |
34 -- 50 |
putative serine transporter |
|
_____________114_______________132\n_____________|_________________|\n5'-AUC...CCGAU___CA____________ACGGU...CAA-3'\n______________AGA__GAUUUCAUUUUU\n______________|||__:|||||||||||\n______________UCU__UUAAAGUAAAAA\n3'-UUU...CAGUU___CC____________AAUAA...ACA-5'\n_____________|_________________|\n_____________51________________33\n |
125 -- 131 |
34 -- 40 |
-11.667 kcal/mol |
1.97198 kcal/mol |
1.0739 kcal/mol |
114 132@LB@ | |@LB@5'-AUC...CCGAU CA ACGGU...CAA-3'@LB@ AGA GAUUUCAUUUUU@LB@ ||| :|||||||||||@LB@ UCU UUAAAGUAAAAA@LB@3'-UUU...CAGUU CC AAUAA...ACA-5'@LB@ | |@LB@ 51 33@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -11.667 kcal/mol@LB@Unfolding Energy - mRNA 1.97198 kcal/mol@LB@Unfolding Energy - sRNA 1.0739 kcal/mol@LB@@LB@Position - mRNA 115 -- 131@LB@Position - sRNA 34 -- 50@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 34 -- 40@LB@ |
143 |
0.02773 |
0.6177 |
b0409 |
secF |
-7.84 |
0.111773 |
181 -- 195 |
43 -- 55 |
SecYEG protein translocase auxillary subunit |
|
_____________180_____________196\n_____________|_______________|\n5'-CUU...AAGCU_____UCU_______GCGAU...UGU-3'\n______________GUCAA___GAGGAGU\n______________|||||___|||||:|\n______________CAGUU___CUCCUUA\n3'-UUU...CCGGG_____U_________AAGUA...ACA-5'\n_____________|_______________|\n_____________56______________42\n |
189 -- 195 |
43 -- 49 |
-13.7308 kcal/mol |
4.94116 kcal/mol |
0.946481 kcal/mol |
180 196@LB@ | |@LB@5'-CUU...AAGCU UCU GCGAU...UGU-3'@LB@ GUCAA GAGGAGU@LB@ ||||| |||||:|@LB@ CAGUU CUCCUUA@LB@3'-UUU...CCGGG U AAGUA...ACA-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -13.7308 kcal/mol@LB@Unfolding Energy - mRNA 4.94116 kcal/mol@LB@Unfolding Energy - sRNA 0.946481 kcal/mol@LB@@LB@Position - mRNA 181 -- 195@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 43 -- 49@LB@ |
138 |
0.02658 |
0.6177 |
b2331 |
smrB |
-9.17 |
0.060779 |
224 -- 232 |
45 -- 53 |
putative DNA endonuclease |
|
_____________223_______233\n_____________|_________|\n5'-UCA...CUUAG_________CCAGG...GAC-3'\n______________CGAGGAGGA\n______________|:|:|||||\n______________GUUUCUCCU\n3'-UUU...GGGCA_________UAAAG...ACA-5'\n_____________|_________|\n_____________54________44\n |
226 -- 232 |
45 -- 51 |
-12.8038 kcal/mol |
2.72026 kcal/mol |
0.917553 kcal/mol |
223 233@LB@ | |@LB@5'-UCA...CUUAG CCAGG...GAC-3'@LB@ CGAGGAGGA@LB@ |:|:|||||@LB@ GUUUCUCCU@LB@3'-UUU...GGGCA UAAAG...ACA-5'@LB@ | |@LB@ 54 44@LB@@LB@@LB@Energy -9.17 kcal/mol@LB@Hybridization Energy -12.8038 kcal/mol@LB@Unfolding Energy - mRNA 2.72026 kcal/mol@LB@Unfolding Energy - sRNA 0.917553 kcal/mol@LB@@LB@Position - mRNA 224 -- 232@LB@Position - sRNA 45 -- 53@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 45 -- 51@LB@ |
98 |
0.0193 |
0.6177 |
b2705 |
srlD |
-10.75 |
0.028892 |
101 -- 114 |
40 -- 53 |
sorbitol-6-phosphate dehydrogenase |
|
_____________100____________115\n_____________|______________|\n5'-CAC...UUAAA_____C________CGGGC...AUA-3'\n______________CGAAG_GGAAUUUC\n______________|:|||_||||||||\n______________GUUUC_CCUUAAAG\n3'-UUU...GGGCA_____U________UAAAA...ACA-5'\n_____________|______________|\n_____________54_____________39\n |
108 -- 114 |
40 -- 46 |
-15.1517 kcal/mol |
3.39572 kcal/mol |
1.00568 kcal/mol |
100 115@LB@ | |@LB@5'-CAC...UUAAA C CGGGC...AUA-3'@LB@ CGAAG GGAAUUUC@LB@ |:||| ||||||||@LB@ GUUUC CCUUAAAG@LB@3'-UUU...GGGCA U UAAAA...ACA-5'@LB@ | |@LB@ 54 39@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -15.1517 kcal/mol@LB@Unfolding Energy - mRNA 3.39572 kcal/mol@LB@Unfolding Energy - sRNA 1.00568 kcal/mol@LB@@LB@Position - mRNA 101 -- 114@LB@Position - sRNA 40 -- 53@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 40 -- 46@LB@ |