| 78 |
0.01669 |
0.6177 |
b2764 |
cysJ |
-9.29 |
0.057302 |
85 -- 99 |
53 -- 70 |
sulfite reductase alpha subunit flavoprotein |
|
_____________84_________________100\n_____________|__________________|\n5'-UUC...UUAGU__________________UUUAA...UUG-3'\n______________UAUCGCUAU___CCCGUC\n______________|||||||||___||||||\n______________AUAGCGAUA___GGGCAG\n3'-UUU...CGGUU_________ACC______UUUCU...ACA-5'\n_____________|__________________|\n_____________71_________________52\n |
87 -- 93 |
62 -- 68 |
-22.2411 kcal/mol |
2.01357 kcal/mol |
10.9351 kcal/mol |
84 100@LB@ | |@LB@5'-UUC...UUAGU UUUAA...UUG-3'@LB@ UAUCGCUAU CCCGUC@LB@ ||||||||| ||||||@LB@ AUAGCGAUA GGGCAG@LB@3'-UUU...CGGUU ACC UUUCU...ACA-5'@LB@ | |@LB@ 71 52@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -22.2411 kcal/mol@LB@Unfolding Energy - mRNA 2.01357 kcal/mol@LB@Unfolding Energy - sRNA 10.9351 kcal/mol@LB@@LB@Position - mRNA 85 -- 99@LB@Position - sRNA 53 -- 70@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 24 |
0.004602 |
0.5992 |
b0526 |
cysS |
-10.20 |
0.037463 |
234 -- 245 |
41 -- 52 |
cysteinyl-tRNA synthetase |
|
_____________233__________246\n_____________|____________|\n5'-GCC...GCCAA____________AAGCC...ACG-3'\n______________AAAGAGGAAUUU\n______________||||||||||||\n______________UUUCUCCUUAAA\n3'-UUU...GGCAG____________GUAAA...ACA-5'\n_____________|____________|\n_____________53___________40\n |
239 -- 245 |
41 -- 47 |
-14.6017 kcal/mol |
3.53507 kcal/mol |
0.867487 kcal/mol |
233 246@LB@ | |@LB@5'-GCC...GCCAA AAGCC...ACG-3'@LB@ AAAGAGGAAUUU@LB@ ||||||||||||@LB@ UUUCUCCUUAAA@LB@3'-UUU...GGCAG GUAAA...ACA-5'@LB@ | |@LB@ 53 40@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -14.6017 kcal/mol@LB@Unfolding Energy - mRNA 3.53507 kcal/mol@LB@Unfolding Energy - sRNA 0.867487 kcal/mol@LB@@LB@Position - mRNA 234 -- 245@LB@Position - sRNA 41 -- 52@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 185 |
0.03847 |
0.6177 |
b0621 |
dcuC |
-6.69 |
0.186516 |
155 -- 171 |
26 -- 48 |
anaerobic C4-dicarboxylate transport |
|
_____________154_____________________172\n_____________|_______________________|\n5'-UGC...GCUUU_______________________UACUU...UCG-3'\n______________AGGAAUUUU______UUAUUAUU\n______________||||||||:______||||||||\n______________UCCUUAAAG______AAUAAUAA\n3'-UUU...GUUUC_________UAAAAA________UACGG...ACA-5'\n_____________|_______________________|\n_____________49______________________25\n |
165 -- 171 |
26 -- 32 |
-10.8714 kcal/mol |
3.1068 kcal/mol |
1.07117 kcal/mol |
154 172@LB@ | |@LB@5'-UGC...GCUUU UACUU...UCG-3'@LB@ AGGAAUUUU UUAUUAUU@LB@ ||||||||: ||||||||@LB@ UCCUUAAAG AAUAAUAA@LB@3'-UUU...GUUUC UAAAAA UACGG...ACA-5'@LB@ | |@LB@ 49 25@LB@@LB@@LB@Energy -6.69 kcal/mol@LB@Hybridization Energy -10.8714 kcal/mol@LB@Unfolding Energy - mRNA 3.1068 kcal/mol@LB@Unfolding Energy - sRNA 1.07117 kcal/mol@LB@@LB@Position - mRNA 155 -- 171@LB@Position - sRNA 26 -- 48@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 55 |
0.01149 |
0.6177 |
b3287 |
def |
-9.61 |
0.049470 |
133 -- 146 |
41 -- 54 |
peptide deformylase |
|
_____________132____________147\n_____________|______________|\n5'-AUA...GUCAA______________GUCUA...AUG-3'\n______________UCAGAGGGGGAUUU\n______________|||:||:||:||||\n______________AGUUUCUCCUUAAA\n3'-UUU...CGGGC______________GUAAA...ACA-5'\n_____________|______________|\n_____________55_____________40\n |
140 -- 146 |
41 -- 47 |
-17.2173 kcal/mol |
6.66439 kcal/mol |
0.946064 kcal/mol |
132 147@LB@ | |@LB@5'-AUA...GUCAA GUCUA...AUG-3'@LB@ UCAGAGGGGGAUUU@LB@ |||:||:||:||||@LB@ AGUUUCUCCUUAAA@LB@3'-UUU...CGGGC GUAAA...ACA-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -17.2173 kcal/mol@LB@Unfolding Energy - mRNA 6.66439 kcal/mol@LB@Unfolding Energy - sRNA 0.946064 kcal/mol@LB@@LB@Position - mRNA 133 -- 146@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 74 |
0.01569 |
0.6177 |
b3012 |
dkgA |
-8.72 |
0.074604 |
189 -- 197 |
44 -- 52 |
2 5-diketo-D-gluconate reductase A |
|
_____________188_______198\n_____________|_________|\n5'-CUG...AUAUA_________CGUAU...CCA-3'\n______________AAGGAGGAA\n______________||:||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
191 -- 197 |
44 -- 50 |
-11.1725 kcal/mol |
1.58724 kcal/mol |
0.860683 kcal/mol |
188 198@LB@ | |@LB@5'-CUG...AUAUA CGUAU...CCA-3'@LB@ AAGGAGGAA@LB@ ||:||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -11.1725 kcal/mol@LB@Unfolding Energy - mRNA 1.58724 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 86 |
0.01794 |
0.6177 |
b3260 |
dusB |
-7.53 |
0.128932 |
119 -- 138 |
38 -- 55 |
tRNA-dihydrouridine synthase B |
|
_____________118__________________139\n_____________|____________________|\n5'-ACU...GAUUG_______UUU__CC______CUCGU...GAG-3'\n______________GUCAAAG___GG__UUUCAU\n______________|||||||___||__||||||\n______________CAGUUUC___CC__AAAGUA\n3'-UUU...CCGGG_______U____UU______AAAAA...ACA-5'\n_____________|____________________|\n_____________56___________________37\n |
119 -- 125 |
49 -- 55 |
-13.3869 kcal/mol |
4.6894 kcal/mol |
1.17036 kcal/mol |
118 139@LB@ | |@LB@5'-ACU...GAUUG UUU CC CUCGU...GAG-3'@LB@ GUCAAAG GG UUUCAU@LB@ ||||||| || ||||||@LB@ CAGUUUC CC AAAGUA@LB@3'-UUU...CCGGG U UU AAAAA...ACA-5'@LB@ | |@LB@ 56 37@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -13.3869 kcal/mol@LB@Unfolding Energy - mRNA 4.6894 kcal/mol@LB@Unfolding Energy - sRNA 1.17036 kcal/mol@LB@@LB@Position - mRNA 119 -- 138@LB@Position - sRNA 38 -- 55@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 83 |
0.0176 |
0.6177 |
b2457 |
eutM |
-9.48 |
0.052376 |
185 -- 194 |
44 -- 53 |
ethanolamine utilization protein putative carboxysome structural protein |
|
_____________184________195\n_____________|__________|\n5'-UAU...CCUGA__________AGCAC...UUA-3'\n______________UAAAGAGGAA\n______________:|||||||||\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
188 -- 194 |
44 -- 50 |
-11.8586 kcal/mol |
1.44575 kcal/mol |
0.927997 kcal/mol |
184 195@LB@ | |@LB@5'-UAU...CCUGA AGCAC...UUA-3'@LB@ UAAAGAGGAA@LB@ :|||||||||@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -11.8586 kcal/mol@LB@Unfolding Energy - mRNA 1.44575 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 185 -- 194@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 189 |
0.03933 |
0.6177 |
b2461 |
eutP |
-9.78 |
0.045635 |
227 -- 240 |
44 -- 56 |
putative P-loop NTPase ethanolamine utilization protein |
|
_____________226____________241\n_____________|______________|\n5'-AAA...GGUAG________C_____AAACA...CCG-3'\n______________CGUCGGGG_AGGAA\n______________||||:::|_|||||\n______________GCAGUUUC_UCCUU\n3'-UUU...ACCGG______________AAAGU...ACA-5'\n_____________|______________|\n_____________57_____________43\n |
228 -- 234 |
49 -- 55 |
-15.0697 kcal/mol |
4.34178 kcal/mol |
0.948902 kcal/mol |
226 241@LB@ | |@LB@5'-AAA...GGUAG C AAACA...CCG-3'@LB@ CGUCGGGG AGGAA@LB@ ||||:::| |||||@LB@ GCAGUUUC UCCUU@LB@3'-UUU...ACCGG AAAGU...ACA-5'@LB@ | |@LB@ 57 43@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -15.0697 kcal/mol@LB@Unfolding Energy - mRNA 4.34178 kcal/mol@LB@Unfolding Energy - sRNA 0.948902 kcal/mol@LB@@LB@Position - mRNA 227 -- 240@LB@Position - sRNA 44 -- 56@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 174 |
0.03548 |
0.6177 |
b2437 |
eutR |
-7.66 |
0.121193 |
279 -- 299 |
38 -- 55 |
eut operon transcriptional activator AraC family |
|
_____________278___________________300\n_____________|_____________________|\n5'-CGC...CGAAG_______U___UAAUG_____C-3'\n______________GUCGAAG_GGA_____UUCAU\n______________|||:|||_|||_____|||||\n______________CAGUUUC_CCU_____AAGUA\n3'-UUU...CCGGG_______U___UA________AAAAA...ACA-5'\n_____________|_____________________|\n_____________56____________________37\n |
279 -- 285 |
49 -- 55 |
-15.2982 kcal/mol |
6.46344 kcal/mol |
1.17036 kcal/mol |
278 300@LB@ | |@LB@5'-CGC...CGAAG U UAAUG C-3'@LB@ GUCGAAG GGA UUCAU@LB@ |||:||| ||| |||||@LB@ CAGUUUC CCU AAGUA@LB@3'-UUU...CCGGG U UA AAAAA...ACA-5'@LB@ | |@LB@ 56 37@LB@@LB@@LB@Energy -7.66 kcal/mol@LB@Hybridization Energy -15.2982 kcal/mol@LB@Unfolding Energy - mRNA 6.46344 kcal/mol@LB@Unfolding Energy - sRNA 1.17036 kcal/mol@LB@@LB@Position - mRNA 279 -- 299@LB@Position - sRNA 38 -- 55@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 25 |
0.004737 |
0.5992 |
b1093 |
fabG |
-11.25 |
0.022809 |
188 -- 202 |
38 -- 52 |
3-oxoacyl-[acyl-carrier-protein] reductase |
|
_____________187_____________203\n_____________|_______________|\n5'-UAC...CUUUA_________AA____GAAUU...UUG-3'\n______________AAAGAGGAA__UCAU\n______________|||||||||__||||\n______________UUUCUCCUU__AGUA\n3'-UUU...GGCAG_________AA____AAAAA...ACA-5'\n_____________|_______________|\n_____________53______________37\n |
190 -- 196 |
44 -- 50 |
-14.2885 kcal/mol |
1.96871 kcal/mol |
1.0693 kcal/mol |
187 203@LB@ | |@LB@5'-UAC...CUUUA AA GAAUU...UUG-3'@LB@ AAAGAGGAA UCAU@LB@ ||||||||| ||||@LB@ UUUCUCCUU AGUA@LB@3'-UUU...GGCAG AA AAAAA...ACA-5'@LB@ | |@LB@ 53 37@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -14.2885 kcal/mol@LB@Unfolding Energy - mRNA 1.96871 kcal/mol@LB@Unfolding Energy - sRNA 1.0693 kcal/mol@LB@@LB@Position - mRNA 188 -- 202@LB@Position - sRNA 38 -- 52@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 44 -- 50@LB@ |
