| 72 |
0.001945 |
0.09081 |
b3024 |
ygiW |
-9.51 |
0.204072 |
108 -- 126 |
18 -- 35 |
hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein |
|
_____________107_________________127\n_____________|___________________|\n5'-UGA...GCUCU_______ACUAA_______UUUUU...AAA-3'\n______________GUACAGC_____AUUUUAU\n______________|||||||_____|||||||\n______________CAUGUCG_____UAAAAUA\n3'-UUU...AGGAC_______AUCG________CCCAA...UCG-5'\n_____________|___________________|\n_____________36__________________17\n |
120 -- 126 |
18 -- 24 |
-13.5355 kcal/mol |
2.57979 kcal/mol |
1.44471 kcal/mol |
107 127@LB@ | |@LB@5'-UGA...GCUCU ACUAA UUUUU...AAA-3'@LB@ GUACAGC AUUUUAU@LB@ ||||||| |||||||@LB@ CAUGUCG UAAAAUA@LB@3'-UUU...AGGAC AUCG CCCAA...UCG-5'@LB@ | |@LB@ 36 17@LB@@LB@@LB@Energy -9.51 kcal/mol@LB@Hybridization Energy -13.5355 kcal/mol@LB@Unfolding Energy - mRNA 2.57979 kcal/mol@LB@Unfolding Energy - sRNA 1.44471 kcal/mol@LB@@LB@Position - mRNA 108 -- 126@LB@Position - sRNA 18 -- 35@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 73 |
0.002141 |
0.09621 |
b0740 |
tolB |
-11.17 |
0.098836 |
117 -- 150 |
8 -- 46 |
periplasmic protein |
|
_____________116______________________________________151\n_____________|________________________________________|\n5'-UCC...GCCAC______________GUUUUGU___________________AACAU...CCG-3'\n______________GG_GGUU_CUGGUA_______GUAUUUUA___GUU_UGUU\n______________||_||||_||||||_______|:||||||___|||_||||\n______________CC_CCAA_GACCAU_______CGUAAAAU___CAA_ACAA\n3'-UUU...UUCCU__A____G______GUCGAU_________ACC___U____AAAGUCG-5'\n_____________|________________________________________|\n_____________47_______________________________________7\n |
137 -- 143 |
19 -- 25 |
-23.6895 kcal/mol |
7.90884 kcal/mol |
4.60831 kcal/mol |
116 151@LB@ | |@LB@5'-UCC...GCCAC GUUUUGU AACAU...CCG-3'@LB@ GG GGUU CUGGUA GUAUUUUA GUU UGUU@LB@ || |||| |||||| |:|||||| ||| ||||@LB@ CC CCAA GACCAU CGUAAAAU CAA ACAA@LB@3'-UUU...UUCCU A G GUCGAU ACC U AAAGUCG-5'@LB@ | |@LB@ 47 7@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -23.6895 kcal/mol@LB@Unfolding Energy - mRNA 7.90884 kcal/mol@LB@Unfolding Energy - sRNA 4.60831 kcal/mol@LB@@LB@Position - mRNA 117 -- 150@LB@Position - sRNA 8 -- 46@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 74 |
0.00218 |
0.09621 |
b2722 |
hycD |
-16.42 |
0.003958 |
87 -- 124 |
10 -- 46 |
hydrogenase 3 membrane subunit |
|
_____________86_______________________________________125\n_____________|________________________________________|\n5'-UCA...AAUCC________U_______CG________GUGCGA___GA___CGUUG...ACC-3'\n______________GGUG__UC_CUGGUGC__GGCUGGCA______GGG__GUG\n______________||||__||_|||||:|__:|||:|||______|||__:||\n______________CCAC__AG_GACCAUG__UCGAUCGU______CCC__UAC\n3'-UUU...UUCCU____CA____________________AAAAUA___AA___AAAAA...UCG-5'\n_____________|________________________________________|\n_____________47_______________________________________9\n |
104 -- 110 |
24 -- 30 |
-37.0223 kcal/mol |
15.9993 kcal/mol |
4.60552 kcal/mol |
86 125@LB@ | |@LB@5'-UCA...AAUCC U CG GUGCGA GA CGUUG...ACC-3'@LB@ GGUG UC CUGGUGC GGCUGGCA GGG GUG@LB@ |||| || |||||:| :|||:||| ||| :||@LB@ CCAC AG GACCAUG UCGAUCGU CCC UAC@LB@3'-UUU...UUCCU CA AAAAUA AA AAAAA...UCG-5'@LB@ | |@LB@ 47 9@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -37.0223 kcal/mol@LB@Unfolding Energy - mRNA 15.9993 kcal/mol@LB@Unfolding Energy - sRNA 4.60552 kcal/mol@LB@@LB@Position - mRNA 87 -- 124@LB@Position - sRNA 10 -- 46@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 76 |
0.002251 |
0.09621 |
b0020 |
nhaR |
-13.73 |
0.025158 |
90 -- 112 |
25 -- 46 |
transcriptional activator of nhaA |
|
_____________89______________________113\n_____________|_______________________|\n5'-AUC...UCUUC__C___AA____A__________UACGC...CUC-3'\n______________GG_GGU__UUGG_UACAGCUGGU\n______________||_|||__:|||_|||||||:|:\n______________CC_CCA__GACC_AUGUCGAUCG\n3'-UUU...UUCCU__A___AG_______________UAAAA...UCG-5'\n_____________|_______________________|\n_____________47______________________24\n |
106 -- 112 |
25 -- 31 |
-27.2836 kcal/mol |
8.99906 kcal/mol |
4.55673 kcal/mol |
89 113@LB@ | |@LB@5'-AUC...UCUUC C AA A UACGC...CUC-3'@LB@ GG GGU UUGG UACAGCUGGU@LB@ || ||| :||| |||||||:|:@LB@ CC CCA GACC AUGUCGAUCG@LB@3'-UUU...UUCCU A AG UAAAA...UCG-5'@LB@ | |@LB@ 47 24@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -27.2836 kcal/mol@LB@Unfolding Energy - mRNA 8.99906 kcal/mol@LB@Unfolding Energy - sRNA 4.55673 kcal/mol@LB@@LB@Position - mRNA 90 -- 112@LB@Position - sRNA 25 -- 46@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 77 |
0.002255 |
0.09621 |
b3052 |
hldE |
-16.16 |
0.004835 |
103 -- 144 |
10 -- 48 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________102___________________________________________145\n_____________|_____________________________________________|\n5'-GCG...CCGCA___C___AA_________GGGCA________GAA_____CUG___GAAGA...CGC-3'\n______________GAG_GUG____CUGGUGC_____AGCUGGCA____GUGG___GUG\n______________|||_|||____|||||:|_____||||:|||____:|||___:||\n______________CUC_CAC____GACCAUG_____UCGAUCGU____UACC___UAC\n3'-UUU...GAUUC_______CAAG____________________AAAA____CAA___AAAAA...UCG-5'\n_____________|_____________________________________________|\n_____________49____________________________________________9\n |
125 -- 131 |
24 -- 30 |
-34.5885 kcal/mol |
13.822 kcal/mol |
4.60637 kcal/mol |
102 145@LB@ | |@LB@5'-GCG...CCGCA C AA GGGCA GAA CUG GAAGA...CGC-3'@LB@ GAG GUG CUGGUGC AGCUGGCA GUGG GUG@LB@ ||| ||| |||||:| ||||:||| :||| :||@LB@ CUC CAC GACCAUG UCGAUCGU UACC UAC@LB@3'-UUU...GAUUC CAAG AAAA CAA AAAAA...UCG-5'@LB@ | |@LB@ 49 9@LB@@LB@@LB@Energy -16.16 kcal/mol@LB@Hybridization Energy -34.5885 kcal/mol@LB@Unfolding Energy - mRNA 13.822 kcal/mol@LB@Unfolding Energy - sRNA 4.60637 kcal/mol@LB@@LB@Position - mRNA 103 -- 144@LB@Position - sRNA 10 -- 48@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 79 |
0.002261 |
0.09621 |
b2556 |
glrK |
-15.72 |
0.006745 |
240 -- 258 |
20 -- 38 |
sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR |
|
_____________239_________________259\n_____________|___________________|\n5'-CUA...GACAA______AU___________UGCUG...CCU-3'\n______________CUGGUA__GCUGGCAUUUU\n______________||||||__|||:|||||||\n______________GACCAU__CGAUCGUAAAA\n3'-UUU...CCAAG______GU___________UACCC...UCG-5'\n_____________|___________________|\n_____________39__________________19\n |
252 -- 258 |
20 -- 26 |
-25.6316 kcal/mol |
5.4283 kcal/mol |
4.48821 kcal/mol |
239 259@LB@ | |@LB@5'-CUA...GACAA AU UGCUG...CCU-3'@LB@ CUGGUA GCUGGCAUUUU@LB@ |||||| |||:|||||||@LB@ GACCAU CGAUCGUAAAA@LB@3'-UUU...CCAAG GU UACCC...UCG-5'@LB@ | |@LB@ 39 19@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -25.6316 kcal/mol@LB@Unfolding Energy - mRNA 5.4283 kcal/mol@LB@Unfolding Energy - sRNA 4.48821 kcal/mol@LB@@LB@Position - mRNA 240 -- 258@LB@Position - sRNA 20 -- 38@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 80 |
0.002475 |
0.104 |
b2468 |
aegA |
-11.19 |
0.098238 |
223 -- 245 |
11 -- 33 |
putative oxidoreductase FeS binding subunit/NAD/FAD-binding subunit |
|
_____________222_____________________246\n_____________|_______________________|\n5'-UCU...GGCCA_____C____AUGUC________CAUGC...UGA-3'\n______________ACAGU_AGCA_____UGGGUUGU\n______________||||:_||||_____||||||:|\n______________UGUCG_UCGU_____ACCCAAUA\n3'-UUU...GACCA_____A____AAAAU________CAAAA...UCG-5'\n_____________|_______________________|\n_____________34______________________10\n |
239 -- 245 |
11 -- 17 |
-21.0997 kcal/mol |
8.44489 kcal/mol |
1.46958 kcal/mol |
222 246@LB@ | |@LB@5'-UCU...GGCCA C AUGUC CAUGC...UGA-3'@LB@ ACAGU AGCA UGGGUUGU@LB@ ||||: |||| ||||||:|@LB@ UGUCG UCGU ACCCAAUA@LB@3'-UUU...GACCA A AAAAU CAAAA...UCG-5'@LB@ | |@LB@ 34 10@LB@@LB@@LB@Energy -11.19 kcal/mol@LB@Hybridization Energy -21.0997 kcal/mol@LB@Unfolding Energy - mRNA 8.44489 kcal/mol@LB@Unfolding Energy - sRNA 1.46958 kcal/mol@LB@@LB@Position - mRNA 223 -- 245@LB@Position - sRNA 11 -- 33@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 82 |
0.002694 |
0.1082 |
b2474 |
tmcA |
-11.34 |
0.091143 |
115 -- 147 |
1 -- 34 |
elongator methionine tRNA (ac4C34) acetyltransferase |
|
_____________114________________________________148\n_____________|__________________________________|\n5'-GAU...AACGC__________UUAAACGU____UCGACAG_____GAUCC...UUG-3'\n______________UACAGCUGGU________GGUU________CGGC\n______________|||||||:|:________||||________|:||\n______________AUGUCGAUCG________CCAA________GUCG\n3'-UUU...GGACC__________UAAAAUAC____UACAAAAA____-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
118 -- 124 |
25 -- 31 |
-23.7384 kcal/mol |
10.9014 kcal/mol |
1.49507 kcal/mol |
114 148@LB@ | |@LB@5'-GAU...AACGC UUAAACGU UCGACAG GAUCC...UUG-3'@LB@ UACAGCUGGU GGUU CGGC@LB@ |||||||:|: |||| |:||@LB@ AUGUCGAUCG CCAA GUCG@LB@3'-UUU...GGACC UAAAAUAC UACAAAAA -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -11.34 kcal/mol@LB@Hybridization Energy -23.7384 kcal/mol@LB@Unfolding Energy - mRNA 10.9014 kcal/mol@LB@Unfolding Energy - sRNA 1.49507 kcal/mol@LB@@LB@Position - mRNA 115 -- 147@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 83 |
0.002775 |
0.1082 |
b2049 |
cpsB |
-6.85 |
0.497101 |
286 -- 298 |
17 -- 31 |
mannose-1-phosphate guanyltransferase |
|
_____________285_____________299\n_____________|_______________|\n5'-ACA...UCCCA_______________CC-3'\n______________AGC_AGU_UUUUAUG\n______________|||_||:_|||||||\n______________UCG_UCG_AAAAUAC\n3'-UUU...CCAUG___A___U_______CCAAU...UCG-5'\n_____________|_______________|\n_____________32______________16\n |
292 -- 298 |
17 -- 23 |
-8.99018 kcal/mol |
0.716641 kcal/mol |
1.4259 kcal/mol |
285 299@LB@ | |@LB@5'-ACA...UCCCA CC-3'@LB@ AGC AGU UUUUAUG@LB@ ||| ||: |||||||@LB@ UCG UCG AAAAUAC@LB@3'-UUU...CCAUG A U CCAAU...UCG-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -6.85 kcal/mol@LB@Hybridization Energy -8.99018 kcal/mol@LB@Unfolding Energy - mRNA 0.716641 kcal/mol@LB@Unfolding Energy - sRNA 1.4259 kcal/mol@LB@@LB@Position - mRNA 286 -- 298@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 84 |
0.00278 |
0.1082 |
b1418 |
cybB |
-11.15 |
0.099871 |
281 -- 297 |
37 -- 49 |
cytochrome b561 |
|
_____________280_______________298\n_____________|_________________|\n5'-AAC...GCAAU____UUUC_________UCC-3'\n______________GGAG____GUGGUUUCU\n______________||||____||||||:||\n______________CCUC____CACCAAGGA\n3'-UUU...CGAUU_________________CCAUG...UCG-5'\n_____________|_________________|\n_____________50________________36\n |
291 -- 297 |
37 -- 43 |
-16.7846 kcal/mol |
2.49998 kcal/mol |
3.13428 kcal/mol |
280 298@LB@ | |@LB@5'-AAC...GCAAU UUUC UCC-3'@LB@ GGAG GUGGUUUCU@LB@ |||| ||||||:||@LB@ CCUC CACCAAGGA@LB@3'-UUU...CGAUU CCAUG...UCG-5'@LB@ | |@LB@ 50 36@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -16.7846 kcal/mol@LB@Unfolding Energy - mRNA 2.49998 kcal/mol@LB@Unfolding Energy - sRNA 3.13428 kcal/mol@LB@@LB@Position - mRNA 281 -- 297@LB@Position - sRNA 37 -- 49@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 37 -- 43@LB@ |
