| 108 |
0.004185 |
0.1296 |
b2158 |
yeiH |
-13.47 |
0.029300 |
232 -- 260 |
12 -- 35 |
UPF0324 family inner membrane protein |
|
_____________231___________________________261\n_____________|_____________________________|\n5'-CAC...ACAUC_____CUG___________UCCG______GCCCU...GUG-3'\n______________GUACA___UGGCAUUUUAU____GGGUUA\n______________|||||___|:|||||||||____||||||\n______________CAUGU___AUCGUAAAAUA____CCCAAU\n3'-UUU...AGGAC_____CG______________________ACAAA...UCG-5'\n_____________|_____________________________|\n_____________36____________________________11\n |
244 -- 250 |
18 -- 24 |
-22.9966 kcal/mol |
8.07046 kcal/mol |
1.45491 kcal/mol |
231 261@LB@ | |@LB@5'-CAC...ACAUC CUG UCCG GCCCU...GUG-3'@LB@ GUACA UGGCAUUUUAU GGGUUA@LB@ ||||| |:||||||||| ||||||@LB@ CAUGU AUCGUAAAAUA CCCAAU@LB@3'-UUU...AGGAC CG ACAAA...UCG-5'@LB@ | |@LB@ 36 11@LB@@LB@@LB@Energy -13.47 kcal/mol@LB@Hybridization Energy -22.9966 kcal/mol@LB@Unfolding Energy - mRNA 8.07046 kcal/mol@LB@Unfolding Energy - sRNA 1.45491 kcal/mol@LB@@LB@Position - mRNA 232 -- 260@LB@Position - sRNA 12 -- 35@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 109 |
0.004204 |
0.1296 |
b1384 |
feaR |
-11.47 |
0.085662 |
210 -- 231 |
1 -- 26 |
transcriptional activator for tynA and feaB |
|
_____________209________________________232\n_____________|__________________________|\n5'-UGU...ACCCC___________AUA___AG_______AAUGG...CGG-3'\n______________GCA____GUGG___AUG__UUUCAGC\n______________|||____:|||___|||__|||||||\n______________CGU____UACC___UAC__AAAGUCG\n3'-UUU...UCGAU___AAAA____CAA___AA_______-5'\n_____________|_________________________|\n_____________27________________________1\n |
225 -- 231 |
1 -- 7 |
-17.3605 kcal/mol |
4.42522 kcal/mol |
1.46544 kcal/mol |
209 232@LB@ | |@LB@5'-UGU...ACCCC AUA AG AAUGG...CGG-3'@LB@ GCA GUGG AUG UUUCAGC@LB@ ||| :||| ||| |||||||@LB@ CGU UACC UAC AAAGUCG@LB@3'-UUU...UCGAU AAAA CAA AA -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -11.47 kcal/mol@LB@Hybridization Energy -17.3605 kcal/mol@LB@Unfolding Energy - mRNA 4.42522 kcal/mol@LB@Unfolding Energy - sRNA 1.46544 kcal/mol@LB@@LB@Position - mRNA 210 -- 231@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 110 |
0.004262 |
0.1302 |
b1871 |
cmoB |
-11.44 |
0.086999 |
165 -- 182 |
22 -- 44 |
tRNA (cmo5U34)-carboxymethyltransferase carboxy-SAM-dependent |
|
_____________164______________________183\n_____________|________________________|\n5'-CAC...AACUU______A_________________AAAAG...AGC-3'\n______________UGGUUC_CUGG______UGGCAUU\n______________||||||_||||______|:|||||\n______________ACCAAG_GACC______AUCGUAA\n3'-UUU...CCUCC___________AUGUCG_______AAUAC...UCG-5'\n_____________|________________________|\n_____________45_______________________21\n |
176 -- 182 |
22 -- 28 |
-20.1895 kcal/mol |
4.19283 kcal/mol |
4.55859 kcal/mol |
164 183@LB@ | |@LB@5'-CAC...AACUU A AAAAG...AGC-3'@LB@ UGGUUC CUGG UGGCAUU@LB@ |||||| |||| |:|||||@LB@ ACCAAG GACC AUCGUAA@LB@3'-UUU...CCUCC AUGUCG AAUAC...UCG-5'@LB@ | |@LB@ 45 21@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -20.1895 kcal/mol@LB@Unfolding Energy - mRNA 4.19283 kcal/mol@LB@Unfolding Energy - sRNA 4.55859 kcal/mol@LB@@LB@Position - mRNA 165 -- 182@LB@Position - sRNA 22 -- 44@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 111 |
0.004429 |
0.1334 |
b0141 |
yadN |
-9.15 |
0.234499 |
216 -- 249 |
16 -- 43 |
putative fimbrial-like adhesin protein |
|
_____________215____________________________________250\n_____________|______________________________________|\n5'-UUA...AAUUA_____UGCCCUGU_____CUUAU_______________UUGCA...GUG-3'\n______________GGUUU________CUGGU_____GCUGGCG____AUGG\n______________||||:________|||||_____|||:||:____||||\n______________CCAAG________GACCA_____CGAUCGU____UACC\n3'-UUU...CUCCA__________________UGU_________AAAA____CAAUA...UCG-5'\n_____________|______________________________________|\n_____________44_____________________________________15\n |
239 -- 245 |
24 -- 30 |
-21.9877 kcal/mol |
8.2619 kcal/mol |
4.57091 kcal/mol |
215 250@LB@ | |@LB@5'-UUA...AAUUA UGCCCUGU CUUAU UUGCA...GUG-3'@LB@ GGUUU CUGGU GCUGGCG AUGG@LB@ ||||: ||||| |||:||: ||||@LB@ CCAAG GACCA CGAUCGU UACC@LB@3'-UUU...CUCCA UGU AAAA CAAUA...UCG-5'@LB@ | |@LB@ 44 15@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -21.9877 kcal/mol@LB@Unfolding Energy - mRNA 8.2619 kcal/mol@LB@Unfolding Energy - sRNA 4.57091 kcal/mol@LB@@LB@Position - mRNA 216 -- 249@LB@Position - sRNA 16 -- 43@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 113 |
0.004738 |
0.1404 |
b3197 |
kdsD |
-14.34 |
0.017174 |
210 -- 240 |
1 -- 35 |
D-arabinose 5-phosphate isomerase |
|
_____________209_________________________________241\n_____________|___________________________________|\n5'-AGG...CGCAC___G________ACC________U__AC_______AAGCA...ACA-3'\n______________GUA_AGUUA_CA______GGGUU_UG__UUUCAGC\n______________|||_||:||_||______|||||_||__|||||||\n______________CAU_UCGAU_GU______CCCAA_AC__AAAGUCG\n3'-UUU...AGGAC___G_____C__AAAAUA_____U__AA_______-5'\n_____________|__________________________________|\n_____________36_________________________________1\n |
234 -- 240 |
1 -- 7 |
-24.924 kcal/mol |
9.08416 kcal/mol |
1.49508 kcal/mol |
209 241@LB@ | |@LB@5'-AGG...CGCAC G ACC U AC AAGCA...ACA-3'@LB@ GUA AGUUA CA GGGUU UG UUUCAGC@LB@ ||| ||:|| || ||||| || |||||||@LB@ CAU UCGAU GU CCCAA AC AAAGUCG@LB@3'-UUU...AGGAC G C AAAAUA U AA -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -24.924 kcal/mol@LB@Unfolding Energy - mRNA 9.08416 kcal/mol@LB@Unfolding Energy - sRNA 1.49508 kcal/mol@LB@@LB@Position - mRNA 210 -- 240@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 114 |
0.004808 |
0.1404 |
b2372 |
yfdV |
-9.14 |
0.236047 |
240 -- 266 |
1 -- 35 |
putative transporter |
|
_____________239____________________________________267\n_____________|______________________________________|\n5'-UUC...UUAUC___AU__U______________________________GGCAG...CUC-3'\n______________GUA__CA_GCU_GU______UGGGUUAU____UUUAGC\n______________|||__||_|||_|:______||||||||____||:|||\n______________CAU__GU_CGA_CG______ACCCAAUA____AAGUCG\n3'-UUU...AGGAC___________U__UAAAAU________CAAA______-5'\n_____________|_____________________________________|\n_____________36____________________________________1\n |
254 -- 260 |
11 -- 17 |
-17.7969 kcal/mol |
7.16419 kcal/mol |
1.49508 kcal/mol |
239 267@LB@ | |@LB@5'-UUC...UUAUC AU U GGCAG...CUC-3'@LB@ GUA CA GCU GU UGGGUUAU UUUAGC@LB@ ||| || ||| |: |||||||| ||:|||@LB@ CAU GU CGA CG ACCCAAUA AAGUCG@LB@3'-UUU...AGGAC U UAAAAU CAAA -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -17.7969 kcal/mol@LB@Unfolding Energy - mRNA 7.16419 kcal/mol@LB@Unfolding Energy - sRNA 1.49508 kcal/mol@LB@@LB@Position - mRNA 240 -- 266@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 115 |
0.004814 |
0.1404 |
b2743 |
pcm |
-10.63 |
0.126788 |
157 -- 183 |
29 -- 48 |
L-isoaspartate protein carboxylmethyltransferase type II |
|
_____________156_________________________184\n_____________|___________________________|\n5'-AUC...CGCAA__U_______CAGA_____UAA_____GUGGG...AAA-3'\n______________GA_GUGGUUU____CUGGU___ACAGC\n______________||_||||||:____|||||___|||||\n______________CU_CACCAAG____GACCA___UGUCG\n3'-UUU...GAUUC__C________________________AUCGU...UCG-5'\n_____________|___________________________|\n_____________49__________________________28\n |
160 -- 166 |
39 -- 45 |
-22.1612 kcal/mol |
7.2267 kcal/mol |
4.30129 kcal/mol |
156 184@LB@ | |@LB@5'-AUC...CGCAA U CAGA UAA GUGGG...AAA-3'@LB@ GA GUGGUUU CUGGU ACAGC@LB@ || ||||||: ||||| |||||@LB@ CU CACCAAG GACCA UGUCG@LB@3'-UUU...GAUUC C AUCGU...UCG-5'@LB@ | |@LB@ 49 28@LB@@LB@@LB@Energy -10.63 kcal/mol@LB@Hybridization Energy -22.1612 kcal/mol@LB@Unfolding Energy - mRNA 7.2267 kcal/mol@LB@Unfolding Energy - sRNA 4.30129 kcal/mol@LB@@LB@Position - mRNA 157 -- 183@LB@Position - sRNA 29 -- 48@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 116 |
0.004845 |
0.1404 |
b2277 |
nuoM |
-9.49 |
0.205960 |
1 -- 40 |
8 -- 43 |
NADH:ubiquinone oxidoreductase membrane subunit M |
|
______________1___________________________________________41\n______________|___________________________________________|\n___________5'-_____G______________CUGUUG____UACUGC____A___AAGGA...UGA-3'\n______________GG_UC_UGGU___GCUGGCA______AUGG______GUUG_GUU\n______________||_||_||||___|||:|||______||||______|||:_|||\n______________CC_AG_ACCA___CGAUCGU______UACC______CAAU_CAA\n3'-UUU...CUCCA__A__G____UGU_______AAAA________________A___AAAGUCG-5'\n_____________|____________________________________________|\n_____________44___________________________________________7\n |
10 -- 16 |
24 -- 30 |
-25.9982 kcal/mol |
11.9029 kcal/mol |
4.60748 kcal/mol |
1 41@LB@ | |@LB@ 5'- G CUGUUG UACUGC A AAGGA...UGA-3'@LB@ GG UC UGGU GCUGGCA AUGG GUUG GUU@LB@ || || |||| |||:||| |||| |||: |||@LB@ CC AG ACCA CGAUCGU UACC CAAU CAA@LB@3'-UUU...CUCCA A G UGU AAAA A AAAGUCG-5'@LB@ | |@LB@ 44 7@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -25.9982 kcal/mol@LB@Unfolding Energy - mRNA 11.9029 kcal/mol@LB@Unfolding Energy - sRNA 4.60748 kcal/mol@LB@@LB@Position - mRNA 1 -- 40@LB@Position - sRNA 8 -- 43@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 117 |
0.004938 |
0.1407 |
b2560 |
pgpC |
-11.09 |
0.102961 |
189 -- 233 |
4 -- 51 |
phosphatidylglycerophosphatase C membrane bound |
|
_____________188_________________________________________________234\n_____________|___________________________________________________|\n5'-UCG...GUCCA______UA__________CA__UCACG_____CG_________________GACUU...GCC-3'\n______________GAGGAG__UGGUU__UGG__AC_____AGCGU__UGUGG____UGUUUUUU\n______________:|||||__|||||__|||__||_____|||:|__|:|||____|||||||:\n______________UUCCUC__ACCAA__ACC__UG_____UCGUA__AUACC____ACAAAAAG\n3'-UUU...UCCGA______C______GG___A___UCGA______AA_____CAAU________UCG-5'\n_____________|___________________________________________________|\n_____________52__________________________________________________3\n |
227 -- 233 |
4 -- 10 |
-30.0966 kcal/mol |
14.318 kcal/mol |
4.69283 kcal/mol |
188 234@LB@ | |@LB@5'-UCG...GUCCA UA CA UCACG CG GACUU...GCC-3'@LB@ GAGGAG UGGUU UGG AC AGCGU UGUGG UGUUUUUU@LB@ :||||| ||||| ||| || |||:| |:||| |||||||:@LB@ UUCCUC ACCAA ACC UG UCGUA AUACC ACAAAAAG@LB@3'-UUU...UCCGA C GG A UCGA AA CAAU UCG-5'@LB@ | |@LB@ 52 3@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -30.0966 kcal/mol@LB@Unfolding Energy - mRNA 14.318 kcal/mol@LB@Unfolding Energy - sRNA 4.69283 kcal/mol@LB@@LB@Position - mRNA 189 -- 233@LB@Position - sRNA 4 -- 51@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 118 |
0.00496 |
0.1407 |
b1128 |
roxA |
-15.27 |
0.009267 |
80 -- 105 |
22 -- 49 |
50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase |
|
_____________79___________________________106\n_____________|____________________________|\n5'-UGG...CGGAU_______A_____________C______CUGCG...ACC-3'\n______________GGAGGUG_UUUUUGGU_C_GC_AGCAUU\n______________|||||||_||::||||_|_||_||||||\n______________CCUCCAC_AAGGACCA_G_CG_UCGUAA\n3'-UUU...CGAUU_______C________U_U__A______AAUAC...UCG-5'\n_____________|____________________________|\n_____________50___________________________21\n |
80 -- 86 |
43 -- 49 |
-30.554 kcal/mol |
10.7239 kcal/mol |
4.55979 kcal/mol |
79 106@LB@ | |@LB@5'-UGG...CGGAU A C CUGCG...ACC-3'@LB@ GGAGGUG UUUUUGGU C GC AGCAUU@LB@ ||||||| ||::|||| | || ||||||@LB@ CCUCCAC AAGGACCA G CG UCGUAA@LB@3'-UUU...CGAUU C U U A AAUAC...UCG-5'@LB@ | |@LB@ 50 21@LB@@LB@@LB@Energy -15.27 kcal/mol@LB@Hybridization Energy -30.554 kcal/mol@LB@Unfolding Energy - mRNA 10.7239 kcal/mol@LB@Unfolding Energy - sRNA 4.55979 kcal/mol@LB@@LB@Position - mRNA 80 -- 105@LB@Position - sRNA 22 -- 49@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 43 -- 49@LB@ |
