149 |
0.00724 |
0.1633 |
b3494 |
uspB |
-9.24 |
0.227320 |
190 -- 228 |
15 -- 51 |
universal stress (ethanol tolerance) protein B |
|
_____________189_____________________________________229\n_____________|_______________________________________|\n5'-AAU...UCGCC_______A___AUGAUAA___C_GUC_____AUUU____CUUUA...UGC-3'\n______________GGGGAGG_GGU_______GCA_C___GCAUU____UGGG\n______________::|||||_|||_______:||_|___|||||____||||\n______________UUCCUCC_CCA_______UGU_G___CGUAA____ACCC\n3'-UUU...UCCGA_______A___AGGACCA___C_AU______AAU_____AAUAC...UCG-5'\n_____________|_______________________________________|\n_____________52______________________________________14\n |
190 -- 196 |
45 -- 51 |
-24.8188 kcal/mol |
10.9257 kcal/mol |
4.65724 kcal/mol |
189 229@LB@ | |@LB@5'-AAU...UCGCC A AUGAUAA C GUC AUUU CUUUA...UGC-3'@LB@ GGGGAGG GGU GCA C GCAUU UGGG@LB@ ::||||| ||| :|| | ||||| ||||@LB@ UUCCUCC CCA UGU G CGUAA ACCC@LB@3'-UUU...UCCGA A AGGACCA C AU AAU AAUAC...UCG-5'@LB@ | |@LB@ 52 14@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -24.8188 kcal/mol@LB@Unfolding Energy - mRNA 10.9257 kcal/mol@LB@Unfolding Energy - sRNA 4.65724 kcal/mol@LB@@LB@Position - mRNA 190 -- 228@LB@Position - sRNA 15 -- 51@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 45 -- 51@LB@ |
150 |
0.00729 |
0.1634 |
b3184 |
yhbE |
-11.29 |
0.093352 |
190 -- 235 |
1 -- 50 |
EamA family inner membrane putative transporter |
|
_____________189_________________________________________________236\n_____________|___________________________________________________|\n5'-AAG...UUGCA____AUAC___A____AA_____A____GGCAU___CAUUC__________GCUCA...UGG-3'\n______________GGGA____GGU___UG__GCAGC_GGCA_____UGG________UUUUGGC\n______________:|||____|||___||__:||||_:|||_____|||________|||::||\n______________UCCU____CCA___AC__UGUCG_UCGU_____ACC________AAAGUCG\n3'-UUU...CCGAU____CCA____AGG__CA_____A____AAAAU___CAAUACAA_______-5'\n_____________|__________________________________________________|\n_____________51_________________________________________________1\n |
229 -- 235 |
1 -- 7 |
-25.8939 kcal/mol |
9.93833 kcal/mol |
4.6634 kcal/mol |
189 236@LB@ | |@LB@5'-AAG...UUGCA AUAC A AA A GGCAU CAUUC GCUCA...UGG-3'@LB@ GGGA GGU UG GCAGC GGCA UGG UUUUGGC@LB@ :||| ||| || :|||| :||| ||| |||::||@LB@ UCCU CCA AC UGUCG UCGU ACC AAAGUCG@LB@3'-UUU...CCGAU CCA AGG CA A AAAAU CAAUACAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -11.29 kcal/mol@LB@Hybridization Energy -25.8939 kcal/mol@LB@Unfolding Energy - mRNA 9.93833 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 190 -- 235@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 1 -- 7@LB@ |
151 |
0.007423 |
0.1652 |
b2895 |
fldB |
-9.53 |
0.202764 |
191 -- 224 |
1 -- 31 |
flavodoxin 2 |
|
_____________190__________________________________225\n_____________|____________________________________|\n5'-CGG...CGAGA____UA____AUGAA_______CU_______A____UCCAG...AUA-3'\n______________AGCU__CGUU_____UAUGGGU____UUUUU_CGGU\n______________||||__|:||_____|||||||____|||||_|:|:\n______________UCGA__GUAA_____AUACCCA____AAAAA_GUCG\n3'-UUU...CCAUG____UC____A___________AUAC__________-5'\n_____________|___________________________________|\n_____________32__________________________________1\n |
206 -- 212 |
14 -- 20 |
-17.4845 kcal/mol |
6.4701 kcal/mol |
1.48722 kcal/mol |
190 225@LB@ | |@LB@5'-CGG...CGAGA UA AUGAA CU A UCCAG...AUA-3'@LB@ AGCU CGUU UAUGGGU UUUUU CGGU@LB@ |||| |:|| ||||||| ||||| |:|:@LB@ UCGA GUAA AUACCCA AAAAA GUCG@LB@3'-UUU...CCAUG UC A AUAC -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -9.53 kcal/mol@LB@Hybridization Energy -17.4845 kcal/mol@LB@Unfolding Energy - mRNA 6.4701 kcal/mol@LB@Unfolding Energy - sRNA 1.48722 kcal/mol@LB@@LB@Position - mRNA 191 -- 224@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 14 -- 20@LB@ |
152 |
0.007594 |
0.1679 |
b3992 |
thiF |
-12.60 |
0.047865 |
3 -- 22 |
24 -- 47 |
adenylyltransferase modifies ThiS C-terminus |
|
_____________2________________________23\n_____________|________________________|\n_________5'-GC_____________A__________CGGCA...UUA-3'\n______________AGG_GG___CUGG_ACAGCUGGCA\n______________|||_||___||||_||||||:|||\n______________UCC_CC___GACC_UGUCGAUCGU\n3'-UUU...AUUCC___A__AAG____A__________AAAAU...UCG-5'\n_____________|________________________|\n_____________48_______________________23\n |
16 -- 22 |
24 -- 30 |
-27.3128 kcal/mol |
10.1529 kcal/mol |
4.55893 kcal/mol |
2 23@LB@ | |@LB@ 5'-GC A CGGCA...UUA-3'@LB@ AGG GG CUGG ACAGCUGGCA@LB@ ||| || |||| ||||||:|||@LB@ UCC CC GACC UGUCGAUCGU@LB@3'-UUU...AUUCC A AAG A AAAAU...UCG-5'@LB@ | |@LB@ 48 23@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -27.3128 kcal/mol@LB@Unfolding Energy - mRNA 10.1529 kcal/mol@LB@Unfolding Energy - sRNA 4.55893 kcal/mol@LB@@LB@Position - mRNA 3 -- 22@LB@Position - sRNA 24 -- 47@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 24 -- 30@LB@ |
153 |
0.00769 |
0.1686 |
b3292 |
zntR |
-12.84 |
0.042049 |
212 -- 231 |
16 -- 37 |
zntA gene transcriptional activator |
|
_____________211____________________232\n_____________|______________________|\n5'-UGA...CGCAU______________AAA_____CGGAA...CUG-3'\n______________UGGUG_AGCUGGCA____AUGG\n______________||||:_||||:|||____||||\n______________ACCAU_UCGAUCGU____UACC\n3'-UUU...CAAGG_____G________AAAA____CAAUA...UCG-5'\n_____________|______________________|\n_____________38_____________________15\n |
218 -- 224 |
24 -- 30 |
-20.2277 kcal/mol |
4.73271 kcal/mol |
2.65753 kcal/mol |
211 232@LB@ | |@LB@5'-UGA...CGCAU AAA CGGAA...CUG-3'@LB@ UGGUG AGCUGGCA AUGG@LB@ ||||: ||||:||| ||||@LB@ ACCAU UCGAUCGU UACC@LB@3'-UUU...CAAGG G AAAA CAAUA...UCG-5'@LB@ | |@LB@ 38 15@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -20.2277 kcal/mol@LB@Unfolding Energy - mRNA 4.73271 kcal/mol@LB@Unfolding Energy - sRNA 2.65753 kcal/mol@LB@@LB@Position - mRNA 212 -- 231@LB@Position - sRNA 16 -- 37@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 24 -- 30@LB@ |
154 |
0.007726 |
0.1686 |
b4203 |
rplI |
-9.34 |
0.218324 |
285 -- 297 |
29 -- 41 |
50S ribosomal subunit protein L9 |
|
_____________284___________298\n_____________|_____________|\n5'-AAA...GUAAC__________C__AGG-3'\n______________UUCCUGGUAC_GC\n______________||||||||||_||\n______________AAGGACCAUG_CG\n3'-UUU...CCACC__________U__AUCGU...UCG-5'\n_____________|_____________|\n_____________42____________28\n |
288 -- 294 |
32 -- 38 |
-19.8737 kcal/mol |
6.23655 kcal/mol |
4.29727 kcal/mol |
284 298@LB@ | |@LB@5'-AAA...GUAAC C AGG-3'@LB@ UUCCUGGUAC GC@LB@ |||||||||| ||@LB@ AAGGACCAUG CG@LB@3'-UUU...CCACC U AUCGU...UCG-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -19.8737 kcal/mol@LB@Unfolding Energy - mRNA 6.23655 kcal/mol@LB@Unfolding Energy - sRNA 4.29727 kcal/mol@LB@@LB@Position - mRNA 285 -- 297@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 32 -- 38@LB@ |
155 |
0.007835 |
0.1694 |
b2239 |
glpQ |
-10.90 |
0.112133 |
59 -- 106 |
1 -- 45 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________58________________________________________________107\n_____________|_________________________________________________|\n5'-CGG...ACACC____AC_____C__CUG__A_____GC_______UA____A__GG____AGCAU...UCA-3'\n______________GUGG__UUCUU_GG___GG_UGGCG__UUUAUGG___AUG_UU__CGGC\n______________||||__|||:|_||___:|_|:||:__|||||||___|||_||__|:||\n______________CACC__AAGGA_CC___UC_AUCGU__AAAUACC___UAC_AA__GUCG\n3'-UUU...UCCUC______________AUG__G_____A________CAA___A__AA____-5'\n_____________|________________________________________________|\n_____________46_______________________________________________1\n |
86 -- 92 |
16 -- 22 |
-29.5358 kcal/mol |
14.0238 kcal/mol |
4.60935 kcal/mol |
58 107@LB@ | |@LB@5'-CGG...ACACC AC C CUG A GC UA A GG AGCAU...UCA-3'@LB@ GUGG UUCUU GG GG UGGCG UUUAUGG AUG UU CGGC@LB@ |||| |||:| || :| |:||: ||||||| ||| || |:||@LB@ CACC AAGGA CC UC AUCGU AAAUACC UAC AA GUCG@LB@3'-UUU...UCCUC AUG G A CAA A AA -5'@LB@ | |@LB@ 46 1@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -29.5358 kcal/mol@LB@Unfolding Energy - mRNA 14.0238 kcal/mol@LB@Unfolding Energy - sRNA 4.60935 kcal/mol@LB@@LB@Position - mRNA 59 -- 106@LB@Position - sRNA 1 -- 45@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 16 -- 22@LB@ |
156 |
0.007969 |
0.1694 |
b4025 |
pgi |
-9.69 |
0.190093 |
4 -- 41 |
3 -- 36 |
glucosephosphate isomerase |
|
_____________3_______________________________________42\n_____________|_______________________________________|\n________5'-AGC__G_______U__ACG______GUC___CGGA_______UCCAC...AAG-3'\n______________GG_GCGGUUG_CA____AUGGG___AUG____UUUUUCA\n______________||_:|:|:|:_||____|||||___|||____|||||||\n______________CC_UGUCGAU_GU____UACCC___UAC____AAAAAGU\n3'-UUU...AAGGA__A_______C__AAAA_____AA_______________CG-5'\n_____________|_______________________________________|\n_____________37______________________________________2\n |
35 -- 41 |
3 -- 9 |
-21.0745 kcal/mol |
9.8922 kcal/mol |
1.49503 kcal/mol |
3 42@LB@ | |@LB@ 5'-AGC G U ACG GUC CGGA UCCAC...AAG-3'@LB@ GG GCGGUUG CA AUGGG AUG UUUUUCA@LB@ || :|:|:|: || ||||| ||| |||||||@LB@ CC UGUCGAU GU UACCC UAC AAAAAGU@LB@3'-UUU...AAGGA A C AAAA AA CG-5'@LB@ | |@LB@ 37 2@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -21.0745 kcal/mol@LB@Unfolding Energy - mRNA 9.8922 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 4 -- 41@LB@Position - sRNA 3 -- 36@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 3 -- 9@LB@ |
157 |
0.007972 |
0.1694 |
b4350 |
hsdR |
-17.86 |
0.001148 |
15 -- 50 |
1 -- 35 |
endonuclease R Type I restriction enzyme |
|
_____________14____________________________________51\n_____________|_____________________________________|\n5'-UAG...UCAUA_____UC__U___GAAUCA____AG____________UACUA...ACA-3'\n______________GUACA__CU_GCA_______GGU__AUGUUUUUCGGC\n______________|||||__||_|||_______|||__|||||||||:||\n______________CAUGU__GA_CGU_______CCA__UACAAAAAGUCG\n3'-UUU...AGGAC_____C___U___AAAAUAC___A_____________-5'\n_____________|____________________________________|\n_____________36___________________________________1\n |
44 -- 50 |
1 -- 7 |
-27.1826 kcal/mol |
7.83025 kcal/mol |
1.49508 kcal/mol |
14 51@LB@ | |@LB@5'-UAG...UCAUA UC U GAAUCA AG UACUA...ACA-3'@LB@ GUACA CU GCA GGU AUGUUUUUCGGC@LB@ ||||| || ||| ||| |||||||||:||@LB@ CAUGU GA CGU CCA UACAAAAAGUCG@LB@3'-UUU...AGGAC C U AAAAUAC A -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -17.86 kcal/mol@LB@Hybridization Energy -27.1826 kcal/mol@LB@Unfolding Energy - mRNA 7.83025 kcal/mol@LB@Unfolding Energy - sRNA 1.49508 kcal/mol@LB@@LB@Position - mRNA 15 -- 50@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 1 -- 7@LB@ |
158 |
0.007987 |
0.1694 |
b0756 |
galM |
-12.34 |
0.055034 |
97 -- 122 |
25 -- 48 |
aldose 1-epimerase; type-1 mutarotase; galactose mutarotase |
|
_____________96_________________________123\n_____________|__________________________|\n5'-CUG...CGGAA___C____G____CC_______A___UGUCG...GGG-3'\n______________GAG_UGGU_CCUG__GUACAGC_AGC\n______________|||_||||_||||__|||||||_|||\n______________CUC_ACCA_GGAC__CAUGUCG_UCG\n3'-UUU...GAUUC___C____A_____________A___UAAAA...UCG-5'\n_____________|__________________________|\n_____________49_________________________24\n |
112 -- 118 |
29 -- 35 |
-29.4823 kcal/mol |
12.5844 kcal/mol |
4.55759 kcal/mol |
96 123@LB@ | |@LB@5'-CUG...CGGAA C G CC A UGUCG...GGG-3'@LB@ GAG UGGU CCUG GUACAGC AGC@LB@ ||| |||| |||| ||||||| |||@LB@ CUC ACCA GGAC CAUGUCG UCG@LB@3'-UUU...GAUUC C A A UAAAA...UCG-5'@LB@ | |@LB@ 49 24@LB@@LB@@LB@Energy -12.34 kcal/mol@LB@Hybridization Energy -29.4823 kcal/mol@LB@Unfolding Energy - mRNA 12.5844 kcal/mol@LB@Unfolding Energy - sRNA 4.55759 kcal/mol@LB@@LB@Position - mRNA 97 -- 122@LB@Position - sRNA 25 -- 48@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 29 -- 35@LB@ |