139 |
0.00635 |
0.1535 |
b0800 |
ybiB |
-9.74 |
0.186276 |
120 -- 129 |
27 -- 36 |
putative family 3 glycosyltransferase |
|
_____________119________130\n_____________|__________|\n5'-GCC...CUGAA__________AAAAG...UCA-3'\n______________GGUAUAGUUA\n______________||||:||:||\n______________CCAUGUCGAU\n3'-UUU...AAGGA__________CGUAA...UCG-5'\n_____________|__________|\n_____________37_________26\n |
123 -- 129 |
27 -- 33 |
-12.0711 kcal/mol |
1.15693 kcal/mol |
1.17709 kcal/mol |
119 130@LB@ | |@LB@5'-GCC...CUGAA AAAAG...UCA-3'@LB@ GGUAUAGUUA@LB@ ||||:||:||@LB@ CCAUGUCGAU@LB@3'-UUU...AAGGA CGUAA...UCG-5'@LB@ | |@LB@ 37 26@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -12.0711 kcal/mol@LB@Unfolding Energy - mRNA 1.15693 kcal/mol@LB@Unfolding Energy - sRNA 1.17709 kcal/mol@LB@@LB@Position - mRNA 120 -- 129@LB@Position - sRNA 27 -- 36@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 27 -- 33@LB@ |
140 |
0.006493 |
0.1559 |
b1916 |
sdiA |
-12.48 |
0.051059 |
182 -- 224 |
1 -- 50 |
quorum-sensing transcriptional activator |
|
_____________181_________________________________________________225\n_____________|___________________________________________________|\n5'-UGU...CUCUC_____C_____G_____U______U___GGAUAA___AU____________UGGCG...AGG-3'\n______________AGGGG___GUU_C_GGU_UA_CUA_GCA_______GG_____UUUUUCAGC\n______________|||:|___|||_|_|||_:|_|||_|||_______||_____|||||||||\n______________UCCUC___CAA_G_CCA_GU_GAU_CGU_______CC_____AAAAAGUCG\n3'-UUU...CCGAU_____CAC___G_A___U__C_______AAAAUAC__AAUAC_________-5'\n_____________|__________________________________________________|\n_____________51_________________________________________________1\n |
218 -- 224 |
1 -- 7 |
-26.3158 kcal/mol |
9.17132 kcal/mol |
4.6634 kcal/mol |
181 225@LB@ | |@LB@5'-UGU...CUCUC C G U U GGAUAA AU UGGCG...AGG-3'@LB@ AGGGG GUU C GGU UA CUA GCA GG UUUUUCAGC@LB@ |||:| ||| | ||| :| ||| ||| || |||||||||@LB@ UCCUC CAA G CCA GU GAU CGU CC AAAAAGUCG@LB@3'-UUU...CCGAU CAC G A U C AAAAUAC AAUAC -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -26.3158 kcal/mol@LB@Unfolding Energy - mRNA 9.17132 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 182 -- 224@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 1 -- 7@LB@ |
141 |
0.006623 |
0.1579 |
b1992 |
cobS |
-16.13 |
0.004945 |
167 -- 192 |
24 -- 49 |
cobalamin synthase |
|
_____________166_________________________193\n_____________|___________________________|\n5'-GAG...AGUAU__CU_________G_____UGG_____AAAAU...GUA-3'\n______________GG__GGUGGUUUC_GGUAU____AGUA\n______________||__|||||||:|_||||:____||:|\n______________CC__CCACCAAGG_CCAUG____UCGU\n3'-UUU...CGAUU__U__________A_____UCGA____AAAAU...UCG-5'\n_____________|___________________________|\n_____________50__________________________23\n |
173 -- 179 |
38 -- 44 |
-26.3933 kcal/mol |
5.70356 kcal/mol |
4.5591 kcal/mol |
166 193@LB@ | |@LB@5'-GAG...AGUAU CU G UGG AAAAU...GUA-3'@LB@ GG GGUGGUUUC GGUAU AGUA@LB@ || |||||||:| ||||: ||:|@LB@ CC CCACCAAGG CCAUG UCGU@LB@3'-UUU...CGAUU U A UCGA AAAAU...UCG-5'@LB@ | |@LB@ 50 23@LB@@LB@@LB@Energy -16.13 kcal/mol@LB@Hybridization Energy -26.3933 kcal/mol@LB@Unfolding Energy - mRNA 5.70356 kcal/mol@LB@Unfolding Energy - sRNA 4.5591 kcal/mol@LB@@LB@Position - mRNA 167 -- 192@LB@Position - sRNA 24 -- 49@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 38 -- 44@LB@ |
142 |
0.006672 |
0.1579 |
b3168 |
infB |
-12.04 |
0.064271 |
249 -- 267 |
29 -- 45 |
translation initiation factor IF-2 |
|
_____________248_________________268\n_____________|___________________|\n5'-AAG...CCUCC____AACG___________AAUUU...CUG-3'\n______________GUGG____CCUGGUACAGC\n______________||||____|||||||||||\n______________CACC____GGACCAUGUCG\n3'-UUU...UCCUC____AA_____________AUCGU...UCG-5'\n_____________|___________________|\n_____________46__________________28\n |
261 -- 267 |
29 -- 35 |
-27.2517 kcal/mol |
10.9083 kcal/mol |
4.30037 kcal/mol |
248 268@LB@ | |@LB@5'-AAG...CCUCC AACG AAUUU...CUG-3'@LB@ GUGG CCUGGUACAGC@LB@ |||| |||||||||||@LB@ CACC GGACCAUGUCG@LB@3'-UUU...UCCUC AA AUCGU...UCG-5'@LB@ | |@LB@ 46 28@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -27.2517 kcal/mol@LB@Unfolding Energy - mRNA 10.9083 kcal/mol@LB@Unfolding Energy - sRNA 4.30037 kcal/mol@LB@@LB@Position - mRNA 249 -- 267@LB@Position - sRNA 29 -- 45@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 29 -- 35@LB@ |
143 |
0.00681 |
0.158 |
b2418 |
pdxK |
-15.34 |
0.008827 |
271 -- 292 |
15 -- 47 |
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase |
|
_____________270_______________________________293\n_____________|_________________________________|\n5'-CAU...GUCGC_________________________________CAACAGCA-3'\n______________AGGUGGUUU_____ACGGC_AGC_____GUGGG\n______________||||||||:_____||:||_|||_____:||||\n______________UCCACCAAG_____UGUCG_UCG_____UACCC\n3'-UUU...AUUCC_________GACCA_____A___UAAAA_____AAUAC...UCG-5'\n_____________|_________________________________|\n_____________48________________________________14\n |
273 -- 279 |
39 -- 45 |
-26.4553 kcal/mol |
6.54205 kcal/mol |
4.57348 kcal/mol |
270 293@LB@ | |@LB@5'-CAU...GUCGC CAACAGCA-3'@LB@ AGGUGGUUU ACGGC AGC GUGGG@LB@ ||||||||: ||:|| ||| :||||@LB@ UCCACCAAG UGUCG UCG UACCC@LB@3'-UUU...AUUCC GACCA A UAAAA AAUAC...UCG-5'@LB@ | |@LB@ 48 14@LB@@LB@@LB@Energy -15.34 kcal/mol@LB@Hybridization Energy -26.4553 kcal/mol@LB@Unfolding Energy - mRNA 6.54205 kcal/mol@LB@Unfolding Energy - sRNA 4.57348 kcal/mol@LB@@LB@Position - mRNA 271 -- 292@LB@Position - sRNA 15 -- 47@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 39 -- 45@LB@ |
144 |
0.006813 |
0.158 |
b0111 |
ampE |
-6.38 |
0.559697 |
294 -- 300 |
1 -- 7 |
ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation |
|
_____________293____300\n_____________|______|\n5'-CUU...CGUUC_______-3'\n______________UUUCGGC\n______________||||:||\n______________AAAGUCG\n3'-UUU...UACAA_______-5'\n_____________|______|\n_____________8______1\n |
294 -- 300 |
1 -- 7 |
-7.27697 kcal/mol |
0.0992979 kcal/mol |
0.796773 kcal/mol |
293 300@LB@ | |@LB@5'-CUU...CGUUC -3'@LB@ UUUCGGC@LB@ ||||:||@LB@ AAAGUCG@LB@3'-UUU...UACAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -6.38 kcal/mol@LB@Hybridization Energy -7.27697 kcal/mol@LB@Unfolding Energy - mRNA 0.0992979 kcal/mol@LB@Unfolding Energy - sRNA 0.796773 kcal/mol@LB@@LB@Position - mRNA 294 -- 300@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 1 -- 7@LB@ |
145 |
0.006858 |
0.158 |
b2079 |
baeR |
-14.59 |
0.014658 |
61 -- 107 |
1 -- 46 |
response regulator in two-component regulatory system with BaeS |
|
_____________60________________________________________________108\n_____________|_________________________________________________|\n5'-CAG...CCAGC__C______G__C__G________A____CC__AACAU____GA_____ACAUA...CGA-3'\n______________GG_GGUUCC_GG_UG_GGCUGGCG_UUUG__UG_____UGUU____AGC\n______________||_||||||_||_|:_:|||:||:_|||:__||_____||||____|||\n______________CC_CCAAGG_CC_AU_UCGAUCGU_AAAU__AC_____ACAA____UCG\n3'-UUU...UUCCU__A______A_____G________A________CCAAU____AAAG___-5'\n_____________|________________________________________________|\n_____________47_______________________________________________1\n |
78 -- 84 |
24 -- 30 |
-36.7072 kcal/mol |
17.5074 kcal/mol |
4.60935 kcal/mol |
60 108@LB@ | |@LB@5'-CAG...CCAGC C G C G A CC AACAU GA ACAUA...CGA-3'@LB@ GG GGUUCC GG UG GGCUGGCG UUUG UG UGUU AGC@LB@ || |||||| || |: :|||:||: |||: || |||| |||@LB@ CC CCAAGG CC AU UCGAUCGU AAAU AC ACAA UCG@LB@3'-UUU...UUCCU A A G A CCAAU AAAG -5'@LB@ | |@LB@ 47 1@LB@@LB@@LB@Energy -14.59 kcal/mol@LB@Hybridization Energy -36.7072 kcal/mol@LB@Unfolding Energy - mRNA 17.5074 kcal/mol@LB@Unfolding Energy - sRNA 4.60935 kcal/mol@LB@@LB@Position - mRNA 61 -- 107@LB@Position - sRNA 1 -- 46@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 24 -- 30@LB@ |
146 |
0.006865 |
0.158 |
b2701 |
mltB |
-8.70 |
0.277719 |
77 -- 106 |
9 -- 36 |
membrane-bound lytic murein transglycosylase B |
|
_____________76______________________________107\n_____________|_______________________________|\n5'-AGA...UAAAA________G__G_GAAUGAGU__A_______AAAGU...GAA-3'\n______________GG_AUAGC_AG_G________UG_GUUAUGU\n______________||_|:|||_||_:________||_|||||||\n______________CC_UGUCG_UC_U________AC_CAAUACA\n3'-UUU...AAGGA__A_____A__G_AAAAU_____C_______AAAAGUCG-5'\n_____________|_______________________________|\n_____________37______________________________8\n |
100 -- 106 |
9 -- 15 |
-15.8871 kcal/mol |
5.69864 kcal/mol |
1.48926 kcal/mol |
76 107@LB@ | |@LB@5'-AGA...UAAAA G G GAAUGAGU A AAAGU...GAA-3'@LB@ GG AUAGC AG G UG GUUAUGU@LB@ || |:||| || : || |||||||@LB@ CC UGUCG UC U AC CAAUACA@LB@3'-UUU...AAGGA A A G AAAAU C AAAAGUCG-5'@LB@ | |@LB@ 37 8@LB@@LB@@LB@Energy -8.70 kcal/mol@LB@Hybridization Energy -15.8871 kcal/mol@LB@Unfolding Energy - mRNA 5.69864 kcal/mol@LB@Unfolding Energy - sRNA 1.48926 kcal/mol@LB@@LB@Position - mRNA 77 -- 106@LB@Position - sRNA 9 -- 36@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 9 -- 15@LB@ |
147 |
0.006963 |
0.1592 |
b0723 |
sdhA |
-11.23 |
0.096056 |
156 -- 186 |
10 -- 46 |
succinate dehydrogenase flavoprotein subunit |
|
_____________155_______________________________________187\n_____________|_________________________________________|\n5'-GGU...GCACU________AC_____________A_______AUUC______GUGUG...GUG-3'\n______________GGUGGUUU____________GUG_UUUAUGG____GUUGUG\n______________|||||||:____________|::_|||||||____|||:||\n______________CCACCAAG____________CGU_AAAUACC____CAAUAC\n3'-UUU...UUCCU________GACCAUGUCGAU___A_________________AAAAA...UCG-5'\n_____________|_________________________________________|\n_____________47________________________________________9\n |
170 -- 176 |
16 -- 22 |
-22.0315 kcal/mol |
6.19365 kcal/mol |
4.60552 kcal/mol |
155 187@LB@ | |@LB@5'-GGU...GCACU AC A AUUC GUGUG...GUG-3'@LB@ GGUGGUUU GUG UUUAUGG GUUGUG@LB@ |||||||: |:: ||||||| |||:||@LB@ CCACCAAG CGU AAAUACC CAAUAC@LB@3'-UUU...UUCCU GACCAUGUCGAU A AAAAA...UCG-5'@LB@ | |@LB@ 47 9@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -22.0315 kcal/mol@LB@Unfolding Energy - mRNA 6.19365 kcal/mol@LB@Unfolding Energy - sRNA 4.60552 kcal/mol@LB@@LB@Position - mRNA 156 -- 186@LB@Position - sRNA 10 -- 46@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 16 -- 22@LB@ |
148 |
0.00721 |
0.1633 |
b0643 |
ybeL |
-14.84 |
0.012433 |
12 -- 39 |
23 -- 48 |
DUF1451 family protein |
|
_____________11___________________________40\n_____________|____________________________|\n5'-AAU...GCGUU____________CAGAU_C__A______AGCCC...CGC-3'\n______________GAGGUGGUUUUU_____C_GC_UAGCAU\n______________|||||||||::|_____|_||_||||||\n______________CUCCACCAAGGA_____G_CG_AUCGUA\n3'-UUU...GAUUC____________CCAU__U_________AAAUA...UCG-5'\n_____________|____________________________|\n_____________49___________________________22\n |
17 -- 23 |
37 -- 43 |
-25.8201 kcal/mol |
6.42089 kcal/mol |
4.55935 kcal/mol |
11 40@LB@ | |@LB@5'-AAU...GCGUU CAGAU C A AGCCC...CGC-3'@LB@ GAGGUGGUUUUU C GC UAGCAU@LB@ |||||||||::| | || ||||||@LB@ CUCCACCAAGGA G CG AUCGUA@LB@3'-UUU...GAUUC CCAU U AAAUA...UCG-5'@LB@ | |@LB@ 49 22@LB@@LB@@LB@Energy -14.84 kcal/mol@LB@Hybridization Energy -25.8201 kcal/mol@LB@Unfolding Energy - mRNA 6.42089 kcal/mol@LB@Unfolding Energy - sRNA 4.55935 kcal/mol@LB@@LB@Position - mRNA 12 -- 39@LB@Position - sRNA 23 -- 48@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 37 -- 43@LB@ |