| 197 |
0.005405 |
0.1261 |
pa2580 |
N/A |
-16.79 |
0.002834 |
13 -- 30 |
70 -- 88 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________12__________________31\n_____________|___________________|\n5'-GUG...UCAUC___________________GGCGC...ACC-3'\n______________GAGGG_CUGGCUGCGUGGG\n______________:||:|_|:|:|||||||||\n______________UUCUC_GGCUGACGCACCC\n3'-UUU...UAGAC_____A_____________AGAGA...GUU-5'\n_____________|___________________|\n_____________89__________________69\n |
24 -- 30 |
70 -- 76 |
-30.7983 kcal/mol |
8.14478 kcal/mol |
5.86376 kcal/mol |
12 31@LB@ | |@LB@5'-GUG...UCAUC GGCGC...ACC-3'@LB@ GAGGG CUGGCUGCGUGGG@LB@ :||:| |:|:|||||||||@LB@ UUCUC GGCUGACGCACCC@LB@3'-UUU...UAGAC A AGAGA...GUU-5'@LB@ | |@LB@ 89 69@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -30.7983 kcal/mol@LB@Unfolding Energy - mRNA 8.14478 kcal/mol@LB@Unfolding Energy - sRNA 5.86376 kcal/mol@LB@@LB@Position - mRNA 13 -- 30@LB@Position - sRNA 70 -- 88@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 5 |
7.253e-07 |
0.0006667 |
pa5351 |
rubA1 |
-17.51 |
0.001615 |
172 -- 222 |
71 -- 121 |
rubredoxin |
|
_____________171___________________________________________________223\n_____________|_____________________________________________________|\n5'-CGG...GCGCU__________AAC__GCCC____UAAACAA_______AG_____AA_______UGUGU...UGC-3'\n______________GAACCGUGGU___CC____GAGG________UGAAGA___UGGC__UGCGUGG\n______________:|||||||:|___||____||||________||||||___:|:|__|||||||\n______________UUUGGCACUA___GG____CUCC________ACUUCU___GCUG__ACGCACC\n3'-UUU...CAGUU__________AUC__ACUA____UCUAUUAG______CAG_____________CAGAG...GUU-5'\n_____________|_____________________________________________________|\n_____________122___________________________________________________70\n |
216 -- 222 |
71 -- 77 |
-42.807 kcal/mol |
11.4444 kcal/mol |
13.8582 kcal/mol |
171 223@LB@ | |@LB@5'-CGG...GCGCU AAC GCCC UAAACAA AG AA UGUGU...UGC-3'@LB@ GAACCGUGGU CC GAGG UGAAGA UGGC UGCGUGG@LB@ :|||||||:| || |||| |||||| :|:| |||||||@LB@ UUUGGCACUA GG CUCC ACUUCU GCUG ACGCACC@LB@3'-UUU...CAGUU AUC ACUA UCUAUUAG CAG CAGAG...GUU-5'@LB@ | |@LB@ 122 70@LB@@LB@@LB@Energy -17.51 kcal/mol@LB@Hybridization Energy -42.807 kcal/mol@LB@Unfolding Energy - mRNA 11.4444 kcal/mol@LB@Unfolding Energy - sRNA 13.8582 kcal/mol@LB@@LB@Position - mRNA 172 -- 222@LB@Position - sRNA 71 -- 121@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 8 |
1.007e-05 |
0.004211 |
pa3621 |
fdxA |
-18.47 |
0.000724 |
244 -- 255 |
71 -- 82 |
ferredoxin I |
|
_____________243__________256\n_____________|____________|\n5'-CCU...AUACA____________AAGUC...UGG-3'\n______________CCGACUGCGUGG\n______________||||||||||||\n______________GGCUGACGCACC\n3'-UUU...UCUCA____________CAGAG...GUU-5'\n_____________|____________|\n_____________83___________70\n |
249 -- 255 |
71 -- 77 |
-26.3412 kcal/mol |
3.76302 kcal/mol |
4.10469 kcal/mol |
243 256@LB@ | |@LB@5'-CCU...AUACA AAGUC...UGG-3'@LB@ CCGACUGCGUGG@LB@ ||||||||||||@LB@ GGCUGACGCACC@LB@3'-UUU...UCUCA CAGAG...GUU-5'@LB@ | |@LB@ 83 70@LB@@LB@@LB@Energy -18.47 kcal/mol@LB@Hybridization Energy -26.3412 kcal/mol@LB@Unfolding Energy - mRNA 3.76302 kcal/mol@LB@Unfolding Energy - sRNA 4.10469 kcal/mol@LB@@LB@Position - mRNA 244 -- 255@LB@Position - sRNA 71 -- 82@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 66 |
0.0006609 |
0.04603 |
pa1980 |
eraR |
-16.49 |
0.003558 |
189 -- 219 |
71 -- 102 |
response regulator EraR |
|
_____________188_______________________________220\n_____________|_________________________________|\n5'-GUG...ACUGA_______GGACGA__________U_________ACGAU...GCG-3'\n______________GAGGAGA______UGAAG_GUCC_GCUG_GUGG\n______________|||||||______|||||_||||_:|||_||||\n______________CUCCUCU______ACUUC_CAGG_UGAC_CACC\n3'-UUU...GACUA_______AUUAG______U____C____G____CAGAG...GUU-5'\n_____________|_________________________________|\n_____________103_______________________________70\n |
189 -- 195 |
96 -- 102 |
-37.796 kcal/mol |
12.0241 kcal/mol |
9.28371 kcal/mol |
188 220@LB@ | |@LB@5'-GUG...ACUGA GGACGA U ACGAU...GCG-3'@LB@ GAGGAGA UGAAG GUCC GCUG GUGG@LB@ ||||||| ||||| |||| :||| ||||@LB@ CUCCUCU ACUUC CAGG UGAC CACC@LB@3'-UUU...GACUA AUUAG U C G CAGAG...GUU-5'@LB@ | |@LB@ 103 70@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -37.796 kcal/mol@LB@Unfolding Energy - mRNA 12.0241 kcal/mol@LB@Unfolding Energy - sRNA 9.28371 kcal/mol@LB@@LB@Position - mRNA 189 -- 219@LB@Position - sRNA 71 -- 102@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 82 |
0.000993 |
0.05566 |
pa5549 |
glmS |
-14.85 |
0.011343 |
179 -- 208 |
71 -- 110 |
glucosamine--fructose-6-phosphate aminotransferase |
|
_____________178______________________________________209\n_____________|________________________________________|\n5'-CCG...GUCGA_______A__________________CC__A_________AAUCG...GCG-3'\n______________GGCCUGA__AGGAGA_______AAGA__CC___UGUGUGG\n______________:||||||__||||||_______||||__||___||:||||\n______________UCGGACU__UCCUCU_______UUCU__GG___ACGCACC\n3'-UUU...ACUAA_______AC______AUUAGAC____CA__CUG_______CAGAG...GUU-5'\n_____________|________________________________________|\n_____________111______________________________________70\n |
202 -- 208 |
71 -- 77 |
-33.9361 kcal/mol |
6.17828 kcal/mol |
12.9138 kcal/mol |
178 209@LB@ | |@LB@5'-CCG...GUCGA A CC A AAUCG...GCG-3'@LB@ GGCCUGA AGGAGA AAGA CC UGUGUGG@LB@ :|||||| |||||| |||| || ||:||||@LB@ UCGGACU UCCUCU UUCU GG ACGCACC@LB@3'-UUU...ACUAA AC AUUAGAC CA CUG CAGAG...GUU-5'@LB@ | |@LB@ 111 70@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -33.9361 kcal/mol@LB@Unfolding Energy - mRNA 6.17828 kcal/mol@LB@Unfolding Energy - sRNA 12.9138 kcal/mol@LB@@LB@Position - mRNA 179 -- 208@LB@Position - sRNA 71 -- 110@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 137 |
0.002719 |
0.09122 |
pa5476 |
citA |
-9.77 |
0.199491 |
137 -- 148 |
71 -- 82 |
citrate transporter |
pa0703 pa4343 |
_____________136__________149\n_____________|____________|\n5'-UCG...CGUAC___C________CCAUC...CCG-3'\n______________CCG_CUGCGUGG\n______________|||_||||||||\n______________GGC_GACGCACC\n3'-UUU...UCUCA___U________CAGAG...GUU-5'\n_____________|____________|\n_____________83___________70\n |
142 -- 148 |
71 -- 77 |
-20.5392 kcal/mol |
6.66778 kcal/mol |
4.10469 kcal/mol |
136 149@LB@ | |@LB@5'-UCG...CGUAC C CCAUC...CCG-3'@LB@ CCG CUGCGUGG@LB@ ||| ||||||||@LB@ GGC GACGCACC@LB@3'-UUU...UCUCA U CAGAG...GUU-5'@LB@ | |@LB@ 83 70@LB@@LB@@LB@Energy -9.77 kcal/mol@LB@Hybridization Energy -20.5392 kcal/mol@LB@Unfolding Energy - mRNA 6.66778 kcal/mol@LB@Unfolding Energy - sRNA 4.10469 kcal/mol@LB@@LB@Position - mRNA 137 -- 148@LB@Position - sRNA 71 -- 82@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 51 |
0.0003802 |
0.03426 |
pa4431 |
N/A |
-18.94 |
0.000478 |
156 -- 218 |
72 -- 123 |
iron-sulfur protein |
|
_____________155________________________________________________________________219\n_____________|__________________________________________________________________|\n5'-UAU...UACUU_______________AACAGGUCUGAAG____________C________U____AA____G_____AAUGC...UCG-3'\n______________AAAGGCC_UGAUUAG_____________CUGAUG_GGAGA_GA_CUGAA_GAGU__UGAC_GCGUG\n______________|||::||_|||||||_____________||||||_|||||_:|_|||||_||||__:|||_|||||\n______________UUUUUGG_ACUAAUC_____________GACUAC_CCUCU_UU_GACUU_CUCA__GCUG_CGCAC\n3'-UUU...CCCAG_______C_______G__________________U_____A__A__________G_____A_____CCAGA...GUU-5'\n_____________|__________________________________________________________________|\n_____________124________________________________________________________________71\n |
163 -- 169 |
109 -- 115 |
-49.3111 kcal/mol |
18.1339 kcal/mol |
12.2386 kcal/mol |
155 219@LB@ | |@LB@5'-UAU...UACUU AACAGGUCUGAAG C U AA G AAUGC...UCG-3'@LB@ AAAGGCC UGAUUAG CUGAUG GGAGA GA CUGAA GAGU UGAC GCGUG@LB@ |||::|| ||||||| |||||| ||||| :| ||||| |||| :||| |||||@LB@ UUUUUGG ACUAAUC GACUAC CCUCU UU GACUU CUCA GCUG CGCAC@LB@3'-UUU...CCCAG C G U A A G A CCAGA...GUU-5'@LB@ | |@LB@ 124 71@LB@@LB@@LB@Energy -18.94 kcal/mol@LB@Hybridization Energy -49.3111 kcal/mol@LB@Unfolding Energy - mRNA 18.1339 kcal/mol@LB@Unfolding Energy - sRNA 12.2386 kcal/mol@LB@@LB@Position - mRNA 156 -- 218@LB@Position - sRNA 72 -- 123@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 109 -- 115@LB@ |
| 160 |
0.004014 |
0.115 |
pa3736 |
hom |
-12.18 |
0.058138 |
179 -- 203 |
72 -- 98 |
homoserine dehydrogenase |
|
_____________178_________________________204\n_____________|___________________________|\n5'-GAA...GUCGU______GA__________CA_______AAACC...CCG-3'\n______________AGGUGA__UGGGGAGUUC____GCGUG\n______________||:|:|__||::||||:|____|||||\n______________UCUAUU__ACUUCUCAGG____CGCAC\n3'-UUU...ACUCC______AG__________CUGA_____CCAGA...GUU-5'\n_____________|___________________________|\n_____________99__________________________71\n |
190 -- 196 |
81 -- 87 |
-26.8 kcal/mol |
8.47001 kcal/mol |
6.1492 kcal/mol |
178 204@LB@ | |@LB@5'-GAA...GUCGU GA CA AAACC...CCG-3'@LB@ AGGUGA UGGGGAGUUC GCGUG@LB@ ||:|:| ||::||||:| |||||@LB@ UCUAUU ACUUCUCAGG CGCAC@LB@3'-UUU...ACUCC AG CUGA CCAGA...GUU-5'@LB@ | |@LB@ 99 71@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -26.8 kcal/mol@LB@Unfolding Energy - mRNA 8.47001 kcal/mol@LB@Unfolding Energy - sRNA 6.1492 kcal/mol@LB@@LB@Position - mRNA 179 -- 203@LB@Position - sRNA 72 -- 98@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 36 |
0.0001485 |
0.01896 |
pa2147 |
katE |
-15.32 |
0.008256 |
177 -- 207 |
74 -- 109 |
catalase HPII |
|
_____________176_____________________________________208\n_____________|_______________________________________|\n5'-CGU...UUCAU___CAG_____________________AA_____GA___AGCAG...AUC-3'\n______________GCC___GAUGAGGAGA________GGA__CCGAU__GCG\n______________|||___||||||||||________:||__||||:__|||\n______________CGG___CUACUCCUCU________UCU__GGCUG__CGC\n3'-UUU...CUAAU___A____________AUUAGACU___CA_____A____ACCCA...GUU-5'\n_____________|_______________________________________|\n_____________110_____________________________________73\n |
186 -- 192 |
96 -- 102 |
-32.3599 kcal/mol |
5.50185 kcal/mol |
11.5406 kcal/mol |
176 208@LB@ | |@LB@5'-CGU...UUCAU CAG AA GA AGCAG...AUC-3'@LB@ GCC GAUGAGGAGA GGA CCGAU GCG@LB@ ||| |||||||||| :|| ||||: |||@LB@ CGG CUACUCCUCU UCU GGCUG CGC@LB@3'-UUU...CUAAU A AUUAGACU CA A ACCCA...GUU-5'@LB@ | |@LB@ 110 73@LB@@LB@@LB@Energy -15.32 kcal/mol@LB@Hybridization Energy -32.3599 kcal/mol@LB@Unfolding Energy - mRNA 5.50185 kcal/mol@LB@Unfolding Energy - sRNA 11.5406 kcal/mol@LB@@LB@Position - mRNA 177 -- 207@LB@Position - sRNA 74 -- 109@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 38 |
0.0001678 |
0.02029 |
pa4131 |
N/A |
-10.32 |
0.153559 |
164 -- 172 |
74 -- 82 |
iron-sulfur protein |
|
_____________163_______173\n_____________|_________|\n5'-CUC...GGGAA_________CCCCU...GCG-3'\n______________CCGGCUGCG\n______________|||:|||||\n______________GGCUGACGC\n3'-UUU...UCUCA_________ACCCA...GUU-5'\n_____________|_________|\n_____________83________73\n |
166 -- 172 |
74 -- 80 |
-17.7171 kcal/mol |
3.29242 kcal/mol |
4.10111 kcal/mol |
163 173@LB@ | |@LB@5'-CUC...GGGAA CCCCU...GCG-3'@LB@ CCGGCUGCG@LB@ |||:|||||@LB@ GGCUGACGC@LB@3'-UUU...UCUCA ACCCA...GUU-5'@LB@ | |@LB@ 83 73@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -17.7171 kcal/mol@LB@Unfolding Energy - mRNA 3.29242 kcal/mol@LB@Unfolding Energy - sRNA 4.10111 kcal/mol@LB@@LB@Position - mRNA 164 -- 172@LB@Position - sRNA 74 -- 82@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 74 -- 80@LB@ |
