| 24 |
5.771e-05 |
0.01105 |
pa5035 |
gltD |
-10.90 |
0.115442 |
181 -- 216 |
79 -- 110 |
glutamate synthase subunit beta |
|
_____________180___________________________________217\n_____________|_____________________________________|\n5'-UCG...CCCGA___UG________UUUC____U_______C_______AUUCC...AGC-3'\n______________AGU__UGAUGAGG____GAUA_GUCUGAA__GUCUGA\n______________||:__||||||||____||||_:||||||__|||:||\n______________UCG__ACUACUCC____CUAU_UAGACUU__CAGGCU\n3'-UUU...ACUAA___G_________U_______________CU______GACGC...GUU-5'\n_____________|_____________________________________|\n_____________111___________________________________78\n |
203 -- 209 |
87 -- 93 |
-30.6009 kcal/mol |
8.30781 kcal/mol |
11.3934 kcal/mol |
180 217@LB@ | |@LB@5'-UCG...CCCGA UG UUUC U C AUUCC...AGC-3'@LB@ AGU UGAUGAGG GAUA GUCUGAA GUCUGA@LB@ ||: |||||||| |||| :|||||| |||:||@LB@ UCG ACUACUCC CUAU UAGACUU CAGGCU@LB@3'-UUU...ACUAA G U CU GACGC...GUU-5'@LB@ | |@LB@ 111 78@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -30.6009 kcal/mol@LB@Unfolding Energy - mRNA 8.30781 kcal/mol@LB@Unfolding Energy - sRNA 11.3934 kcal/mol@LB@@LB@Position - mRNA 181 -- 216@LB@Position - sRNA 79 -- 110@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 87 -- 93@LB@ |
| 35 |
0.0001057 |
0.01388 |
pa1103 |
N/A |
-18.12 |
0.000977 |
185 -- 207 |
81 -- 102 |
flagellar assembly protein FliH |
|
_____________184_____________________208\n_____________|_______________________|\n5'-CGA...GUGGC_________________U_____CCCAC...AGC-3'\n______________GAGGAGAUGAUCUGAGG_GGUCC\n______________||||||||:||||||:|_:||||\n______________CUCCUCUAUUAGACUUC_UCAGG\n3'-UUU...GACUA_______________________CUGAC...GUU-5'\n_____________|_______________________|\n_____________103_____________________80\n |
195 -- 201 |
86 -- 92 |
-35.642 kcal/mol |
10.0244 kcal/mol |
7.49511 kcal/mol |
184 208@LB@ | |@LB@5'-CGA...GUGGC U CCCAC...AGC-3'@LB@ GAGGAGAUGAUCUGAGG GGUCC@LB@ ||||||||:||||||:| :||||@LB@ CUCCUCUAUUAGACUUC UCAGG@LB@3'-UUU...GACUA CUGAC...GUU-5'@LB@ | |@LB@ 103 80@LB@@LB@@LB@Energy -18.12 kcal/mol@LB@Hybridization Energy -35.642 kcal/mol@LB@Unfolding Energy - mRNA 10.0244 kcal/mol@LB@Unfolding Energy - sRNA 7.49511 kcal/mol@LB@@LB@Position - mRNA 185 -- 207@LB@Position - sRNA 81 -- 102@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 86 -- 92@LB@ |
| 126 |
0.002419 |
0.08825 |
pa0452 |
N/A |
-8.57 |
0.332234 |
172 -- 209 |
83 -- 122 |
'Product name confidence: class 3 (Function proposed based on presence of conserved amino acid motif structural feature or limited sequence similarity to an experimentally studied gene)' |
|
_____________171_______________________________________210\n_____________|_________________________________________|\n5'-AGU...UCCUG_______C_C___________A_________A____U____AUUUC...UGG-3'\n______________GAAGUCG_G__UGGCC_GAUG_AGGAGGUGG__UGA_GGGU\n______________:||::||_|__|:|||_||||_|||||:|::__|||_|:||\n______________UUUUGGC_C__AUCGG_CUAC_UCCUCUAUU__ACU_CUCA\n3'-UUU...CCAGU_______A_UA_____A______________AG___U____GGCUG...GUU-5'\n_____________|_________________________________________|\n_____________123_______________________________________82\n |
193 -- 199 |
94 -- 100 |
-32.4047 kcal/mol |
13.786 kcal/mol |
10.0547 kcal/mol |
171 210@LB@ | |@LB@5'-AGU...UCCUG C C A A U AUUUC...UGG-3'@LB@ GAAGUCG G UGGCC GAUG AGGAGGUGG UGA GGGU@LB@ :||::|| | |:||| |||| |||||:|:: ||| |:||@LB@ UUUUGGC C AUCGG CUAC UCCUCUAUU ACU CUCA@LB@3'-UUU...CCAGU A UA A AG U GGCUG...GUU-5'@LB@ | |@LB@ 123 82@LB@@LB@@LB@Energy -8.57 kcal/mol@LB@Hybridization Energy -32.4047 kcal/mol@LB@Unfolding Energy - mRNA 13.786 kcal/mol@LB@Unfolding Energy - sRNA 10.0547 kcal/mol@LB@@LB@Position - mRNA 172 -- 209@LB@Position - sRNA 83 -- 122@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 94 -- 100@LB@ |
| 111 |
0.001873 |
0.07755 |
pa4347 |
N/A |
-11.13 |
0.102611 |
35 -- 49 |
91 -- 105 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________34______________50\n_____________|_______________|\n5'-CUG...ACAUG____U__________GUGCC...UCC-3'\n______________GAUG_GGAGAUGAUC\n______________||||_||||||:|||\n______________CUAC_CCUCUAUUAG\n3'-UUU...UCGGA____U__________ACUUC...GUU-5'\n_____________|_______________|\n_____________106_____________90\n |
41 -- 47 |
93 -- 99 |
-20.2492 kcal/mol |
4.9637 kcal/mol |
4.15885 kcal/mol |
34 50@LB@ | |@LB@5'-CUG...ACAUG U GUGCC...UCC-3'@LB@ GAUG GGAGAUGAUC@LB@ |||| ||||||:|||@LB@ CUAC CCUCUAUUAG@LB@3'-UUU...UCGGA U ACUUC...GUU-5'@LB@ | |@LB@ 106 90@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -20.2492 kcal/mol@LB@Unfolding Energy - mRNA 4.9637 kcal/mol@LB@Unfolding Energy - sRNA 4.15885 kcal/mol@LB@@LB@Position - mRNA 35 -- 49@LB@Position - sRNA 91 -- 105@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 93 -- 99@LB@ |
| 179 |
0.004617 |
0.1185 |
pa4812 |
fdnG |
-14.50 |
0.014314 |
180 -- 196 |
94 -- 109 |
formate dehydrogenase-O major subunit |
|
_____________179_______________197\n_____________|_________________|\n5'-CCC...CCUUU________C________CACGA...CCG-3'\n______________GCCUGAUG_AGGAGAUG\n______________||||||||_|||||||:\n______________CGGACUAC_UCCUCUAU\n3'-UUU...CUAAU_________________UAGAC...GUU-5'\n_____________|_________________|\n_____________110_______________93\n |
190 -- 196 |
94 -- 100 |
-26.4921 kcal/mol |
6.69504 kcal/mol |
5.30224 kcal/mol |
179 197@LB@ | |@LB@5'-CCC...CCUUU C CACGA...CCG-3'@LB@ GCCUGAUG AGGAGAUG@LB@ |||||||| |||||||:@LB@ CGGACUAC UCCUCUAU@LB@3'-UUU...CUAAU UAGAC...GUU-5'@LB@ | |@LB@ 110 93@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -26.4921 kcal/mol@LB@Unfolding Energy - mRNA 6.69504 kcal/mol@LB@Unfolding Energy - sRNA 5.30224 kcal/mol@LB@@LB@Position - mRNA 180 -- 196@LB@Position - sRNA 94 -- 109@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 94 -- 100@LB@ |
| 14 |
1.283e-05 |
0.004211 |
pa2953 |
N/A |
-15.00 |
0.010274 |
173 -- 195 |
95 -- 119 |
electron transfer flavoprotein-ubiquinone oxidoreductase |
|
_____________172________________________196\n_____________|__________________________|\n5'-CGG...CAGAU_____________U___GU_______CGAUA...CCG-3'\n______________ACCGUGA___GCC_UGA__AGGAGAU\n______________|||||||___|||_|||__|||||||\n______________UGGCACU___CGG_ACU__UCCUCUA\n3'-UUU...GUUUU_______AAU_______AC_______UUAGA...GUU-5'\n_____________|__________________________|\n_____________120________________________94\n |
189 -- 195 |
95 -- 101 |
-27.294 kcal/mol |
6.46266 kcal/mol |
5.83995 kcal/mol |
172 196@LB@ | |@LB@5'-CGG...CAGAU U GU CGAUA...CCG-3'@LB@ ACCGUGA GCC UGA AGGAGAU@LB@ ||||||| ||| ||| |||||||@LB@ UGGCACU CGG ACU UCCUCUA@LB@3'-UUU...GUUUU AAU AC UUAGA...GUU-5'@LB@ | |@LB@ 120 94@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -27.294 kcal/mol@LB@Unfolding Energy - mRNA 6.46266 kcal/mol@LB@Unfolding Energy - sRNA 5.83995 kcal/mol@LB@@LB@Position - mRNA 173 -- 195@LB@Position - sRNA 95 -- 119@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 95 -- 101@LB@ |
| 161 |
0.004027 |
0.115 |
pa0009 |
glyQ |
-13.96 |
0.020216 |
43 -- 68 |
95 -- 119 |
glycine--tRNA ligase subunit alpha |
|
_____________42_________________________69\n_____________|__________________________|\n5'-GAA...UCCUC________A____A__UA________CGUCG...ACG-3'\n______________AUCGUGGU_GGCC_UG__GAGGGGAU\n______________|:||||:|_:|||_||__||||:|||\n______________UGGCACUA_UCGG_AC__CUCCUCUA\n3'-UUU...GUUUU________A_______UA________UUAGA...GUU-5'\n_____________|__________________________|\n_____________120________________________94\n |
62 -- 68 |
95 -- 101 |
-28.6932 kcal/mol |
8.89956 kcal/mol |
5.83995 kcal/mol |
42 69@LB@ | |@LB@5'-GAA...UCCUC A A UA CGUCG...ACG-3'@LB@ AUCGUGGU GGCC UG GAGGGGAU@LB@ |:||||:| :||| || ||||:|||@LB@ UGGCACUA UCGG AC CUCCUCUA@LB@3'-UUU...GUUUU A UA UUAGA...GUU-5'@LB@ | |@LB@ 120 94@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -28.6932 kcal/mol@LB@Unfolding Energy - mRNA 8.89956 kcal/mol@LB@Unfolding Energy - sRNA 5.83995 kcal/mol@LB@@LB@Position - mRNA 43 -- 68@LB@Position - sRNA 95 -- 119@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 95 -- 101@LB@ |
| 7 |
9.272e-06 |
0.004211 |
pa1571 |
N/A |
-18.24 |
0.000884 |
168 -- 194 |
96 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________167_________________________195\n_____________|___________________________|\n5'-CGG...UCCCU______CC___AAA_____________CGGGC...AGA-3'\n______________AGACUG__GAU___CCUGAUGAGGAGA\n______________|:||:|__|||___|||||||||||||\n______________UUUGGC__CUA___GGACUACUCCUCU\n3'-UUU...CAGUU______A____AUC_____________AUUAG...GUU-5'\n_____________|___________________________|\n_____________122_________________________95\n |
188 -- 194 |
96 -- 102 |
-30.1565 kcal/mol |
6.37386 kcal/mol |
5.54718 kcal/mol |
167 195@LB@ | |@LB@5'-CGG...UCCCU CC AAA CGGGC...AGA-3'@LB@ AGACUG GAU CCUGAUGAGGAGA@LB@ |:||:| ||| |||||||||||||@LB@ UUUGGC CUA GGACUACUCCUCU@LB@3'-UUU...CAGUU A AUC AUUAG...GUU-5'@LB@ | |@LB@ 122 95@LB@@LB@@LB@Energy -18.24 kcal/mol@LB@Hybridization Energy -30.1565 kcal/mol@LB@Unfolding Energy - mRNA 6.37386 kcal/mol@LB@Unfolding Energy - sRNA 5.54718 kcal/mol@LB@@LB@Position - mRNA 168 -- 194@LB@Position - sRNA 96 -- 121@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 176 |
0.004483 |
0.1171 |
pa1774 |
crfX |
-11.59 |
0.080592 |
153 -- 172 |
96 -- 117 |
Product name confidence: class 1: Function experimentally demonstrated in P. aeruginosa |
|
_____________152______________________173\n_____________|________________________|\n5'-UGC...UCUGA_____________GA_________GGGCG...AGA-3'\n______________CGUGA____CCUG__GUGAGGAGA\n______________|||||____||||__:||||||||\n______________GCACU____GGAC__UACUCCUCU\n3'-UUU...UUUUG_____AAUC_______________AUUAG...GUU-5'\n_____________|________________________|\n_____________118______________________95\n |
166 -- 172 |
96 -- 102 |
-24.6679 kcal/mol |
7.55062 kcal/mol |
5.53547 kcal/mol |
152 173@LB@ | |@LB@5'-UGC...UCUGA GA GGGCG...AGA-3'@LB@ CGUGA CCUG GUGAGGAGA@LB@ ||||| |||| :||||||||@LB@ GCACU GGAC UACUCCUCU@LB@3'-UUU...UUUUG AAUC AUUAG...GUU-5'@LB@ | |@LB@ 118 95@LB@@LB@@LB@Energy -11.59 kcal/mol@LB@Hybridization Energy -24.6679 kcal/mol@LB@Unfolding Energy - mRNA 7.55062 kcal/mol@LB@Unfolding Energy - sRNA 5.53547 kcal/mol@LB@@LB@Position - mRNA 153 -- 172@LB@Position - sRNA 96 -- 117@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 22 |
5.562e-05 |
0.01105 |
pa2264 |
N/A |
-16.58 |
0.003334 |
170 -- 193 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169_______________________194\n_____________|_________________________|\n5'-CCU...AAGAC___________GAU__A________CCCCA...AUG-3'\n______________GAAACCGUGAU___CC_GA_GAGGA\n______________:||||||||||___||_||_|||||\n______________UUUUGGCACUA___GG_CU_CUCCU\n3'-UUU...CCAGU___________AUC__A__A_____CUAUU...GUU-5'\n_____________|_________________________|\n_____________123_______________________97\n |
174 -- 180 |
112 -- 118 |
-25.8581 kcal/mol |
7.03089 kcal/mol |
2.25226 kcal/mol |
169 194@LB@ | |@LB@5'-CCU...AAGAC GAU A CCCCA...AUG-3'@LB@ GAAACCGUGAU CC GA GAGGA@LB@ :|||||||||| || || |||||@LB@ UUUUGGCACUA GG CU CUCCU@LB@3'-UUU...CCAGU AUC A A CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -25.8581 kcal/mol@LB@Unfolding Energy - mRNA 7.03089 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 112 -- 118@LB@ |
