| 139 |
0.002816 |
0.0931 |
pa1173 |
napB |
-8.92 |
0.288683 |
179 -- 194 |
100 -- 120 |
cytochrome C protein NapB |
|
_____________178___________________195\n_____________|_____________________|\n5'-GCG...UGCUC_________________G___CGCGC...ACG-3'\n______________AACC_____UGGCCUGA_GAG\n______________||||_____|:||||||_|||\n______________UUGG_____AUCGGACU_CUC\n3'-UUU...AGUUU____CACUA________A___CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
184 -- 190 |
104 -- 110 |
-18.0021 kcal/mol |
6.83795 kcal/mol |
2.24919 kcal/mol |
178 195@LB@ | |@LB@5'-GCG...UGCUC G CGCGC...ACG-3'@LB@ AACC UGGCCUGA GAG@LB@ |||| |:|||||| |||@LB@ UUGG AUCGGACU CUC@LB@3'-UUU...AGUUU CACUA A CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -8.92 kcal/mol@LB@Hybridization Energy -18.0021 kcal/mol@LB@Unfolding Energy - mRNA 6.83795 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 179 -- 194@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 140 |
0.002911 |
0.09555 |
pa4656 |
N/A |
-13.59 |
0.025440 |
215 -- 238 |
100 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________214______________________239\n_____________|________________________|\n5'-GCC...CUCUU_____GC___ACC___________UCGCC...GGC-3'\n______________GACCG__GGU___GGCCUGAUGGG\n______________:||||__|:|___:||||||||:|\n______________UUGGC__CUA___UCGGACUACUC\n3'-UUU...AGUUU_____A____A_____________CUCUA...GUU-5'\n_____________|________________________|\n_____________121______________________99\n |
232 -- 238 |
100 -- 106 |
-25.6163 kcal/mol |
9.78003 kcal/mol |
2.24919 kcal/mol |
214 239@LB@ | |@LB@5'-GCC...CUCUU GC ACC UCGCC...GGC-3'@LB@ GACCG GGU GGCCUGAUGGG@LB@ :|||| |:| :||||||||:|@LB@ UUGGC CUA UCGGACUACUC@LB@3'-UUU...AGUUU A A CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -25.6163 kcal/mol@LB@Unfolding Energy - mRNA 9.78003 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 215 -- 238@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 141 |
0.002959 |
0.09644 |
pa5519 |
N/A |
-12.18 |
0.058415 |
260 -- 272 |
100 -- 118 |
acyl-CoA thioesterase |
pa2693 |
_____________259_________________273\n_____________|___________________|\n5'-GGG...CCCGC___________________AGAAA...ACA-3'\n______________CCGU______CCUGAUGAG\n______________||||______|||||||||\n______________GGCA______GGACUACUC\n3'-UUU...UUUUU____CUAAUC_________CUCUA...GUU-5'\n_____________|___________________|\n_____________119_________________99\n |
266 -- 272 |
100 -- 106 |
-18.4857 kcal/mol |
4.06476 kcal/mol |
2.24889 kcal/mol |
259 273@LB@ | |@LB@5'-GGG...CCCGC AGAAA...ACA-3'@LB@ CCGU CCUGAUGAG@LB@ |||| |||||||||@LB@ GGCA GGACUACUC@LB@3'-UUU...UUUUU CUAAUC CUCUA...GUU-5'@LB@ | |@LB@ 119 99@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -18.4857 kcal/mol@LB@Unfolding Energy - mRNA 4.06476 kcal/mol@LB@Unfolding Energy - sRNA 2.24889 kcal/mol@LB@@LB@Position - mRNA 260 -- 272@LB@Position - sRNA 100 -- 118@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 155 |
0.003654 |
0.1083 |
pa1551 |
N/A |
-14.46 |
0.014645 |
185 -- 205 |
100 -- 119 |
ferredoxin |
|
_____________184___________________206\n_____________|_____________________|\n5'-ACC...CCACU________AC__A________CAAAC...GGG-3'\n______________GCCGUGGU__GC_CUGAUGAG\n______________:|||||:|__||_||||||||\n______________UGGCACUA__CG_GACUACUC\n3'-UUU...GUUUU________AU___________CUCUA...GUU-5'\n_____________|_____________________|\n_____________120___________________99\n |
199 -- 205 |
100 -- 106 |
-27.0785 kcal/mol |
10.3705 kcal/mol |
2.24903 kcal/mol |
184 206@LB@ | |@LB@5'-ACC...CCACU AC A CAAAC...GGG-3'@LB@ GCCGUGGU GC CUGAUGAG@LB@ :|||||:| || ||||||||@LB@ UGGCACUA CG GACUACUC@LB@3'-UUU...GUUUU AU CUCUA...GUU-5'@LB@ | |@LB@ 120 99@LB@@LB@@LB@Energy -14.46 kcal/mol@LB@Hybridization Energy -27.0785 kcal/mol@LB@Unfolding Energy - mRNA 10.3705 kcal/mol@LB@Unfolding Energy - sRNA 2.24903 kcal/mol@LB@@LB@Position - mRNA 185 -- 205@LB@Position - sRNA 100 -- 119@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 188 |
0.00503 |
0.1227 |
pa1766 |
N/A |
-13.35 |
0.029524 |
230 -- 250 |
100 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________229___________________251\n_____________|_____________________|\n5'-CGA...GACCU_____C__AA___G_______CAUCA...ACC-3'\n______________GACCG_GA__GGC_UGAUGGG\n______________:||||_||__:||_|||||:|\n______________UUGGC_CU__UCG_ACUACUC\n3'-UUU...AGUUU_____A__AA___G_______CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
244 -- 250 |
100 -- 106 |
-24.1459 kcal/mol |
8.55357 kcal/mol |
2.24919 kcal/mol |
229 251@LB@ | |@LB@5'-CGA...GACCU C AA G CAUCA...ACC-3'@LB@ GACCG GA GGC UGAUGGG@LB@ :|||| || :|| |||||:|@LB@ UUGGC CU UCG ACUACUC@LB@3'-UUU...AGUUU A AA G CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -24.1459 kcal/mol@LB@Unfolding Energy - mRNA 8.55357 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 230 -- 250@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 190 |
0.005086 |
0.123 |
pa0591 |
N/A |
-15.37 |
0.007942 |
156 -- 173 |
100 -- 120 |
protein ApaG |
|
_____________155___________________174\n_____________|_____________________|\n5'-UCA...CAGGC_____________________ACACU...CGG-3'\n______________AAUCGU___UAGUCUGAUGAG\n______________||:|||___|||:||||||||\n______________UUGGCA___AUCGGACUACUC\n3'-UUU...AGUUU______CUA____________CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
167 -- 173 |
100 -- 106 |
-22.6098 kcal/mol |
4.99015 kcal/mol |
2.24919 kcal/mol |
155 174@LB@ | |@LB@5'-UCA...CAGGC ACACU...CGG-3'@LB@ AAUCGU UAGUCUGAUGAG@LB@ ||:||| |||:||||||||@LB@ UUGGCA AUCGGACUACUC@LB@3'-UUU...AGUUU CUA CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -15.37 kcal/mol@LB@Hybridization Energy -22.6098 kcal/mol@LB@Unfolding Energy - mRNA 4.99015 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 156 -- 173@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 31 |
8.059e-05 |
0.01177 |
pa5164 |
rmlC |
-15.78 |
0.005968 |
187 -- 204 |
101 -- 122 |
dTDP-4-dehydrorhamnose 3 5-epimerase |
|
_____________186____________________205\n_____________|______________________|\n5'-ACC...UGACC_________UA___________AAGCG...GCG-3'\n______________GAGACCGUG______CUGAUGA\n______________:|:||||||______|||||||\n______________UUUUGGCAC______GACUACU\n3'-UUU...CCAGU_________UAAUCG_______CCUCU...GUU-5'\n_____________|______________________|\n_____________123____________________100\n |
198 -- 204 |
101 -- 107 |
-20.9444 kcal/mol |
2.92213 kcal/mol |
2.24427 kcal/mol |
186 205@LB@ | |@LB@5'-ACC...UGACC UA AAGCG...GCG-3'@LB@ GAGACCGUG CUGAUGA@LB@ :|:|||||| |||||||@LB@ UUUUGGCAC GACUACU@LB@3'-UUU...CCAGU UAAUCG CCUCU...GUU-5'@LB@ | |@LB@ 123 100@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -20.9444 kcal/mol@LB@Unfolding Energy - mRNA 2.92213 kcal/mol@LB@Unfolding Energy - sRNA 2.24427 kcal/mol@LB@@LB@Position - mRNA 187 -- 204@LB@Position - sRNA 101 -- 122@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 40 |
0.0001908 |
0.02192 |
pa5015 |
aceE |
-12.88 |
0.038887 |
273 -- 297 |
101 -- 123 |
pyruvate dehydrogenase subunit E1 |
|
_____________272________________________298\n_____________|__________________________|\n5'-CCU...AAGGU________C_CUC_____________CCC-3'\n______________GAAGACCG_G___AUUA_CCUGAUGA\n______________:||:||||_|___||||_||||||||\n______________UUUUUGGC_C___UAAU_GGACUACU\n3'-UUU...CCCAG________A________C________CCUCU...GUU-5'\n_____________|__________________________|\n_____________124________________________100\n |
291 -- 297 |
101 -- 107 |
-21.2393 kcal/mol |
6.11337 kcal/mol |
2.24445 kcal/mol |
272 298@LB@ | |@LB@5'-CCU...AAGGU C CUC CCC-3'@LB@ GAAGACCG G AUUA CCUGAUGA@LB@ :||:|||| | |||| ||||||||@LB@ UUUUUGGC C UAAU GGACUACU@LB@3'-UUU...CCCAG A C CCUCU...GUU-5'@LB@ | |@LB@ 124 100@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -21.2393 kcal/mol@LB@Unfolding Energy - mRNA 6.11337 kcal/mol@LB@Unfolding Energy - sRNA 2.24445 kcal/mol@LB@@LB@Position - mRNA 273 -- 297@LB@Position - sRNA 101 -- 123@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 44 |
0.0002709 |
0.02829 |
pa1340 |
N/A |
-13.31 |
0.030188 |
17 -- 34 |
101 -- 117 |
amino acid ABC transporter permease |
|
_____________16_________________35\n_____________|__________________|\n5'-AAC...GGCGU__C____C__________AGCUG...UCG-3'\n______________CG_UGAU_GGCCUGAUGG\n______________||_||||_:||||||||:\n______________GC_ACUA_UCGGACUACU\n3'-UUU...UUUUG_______A__________CCUCU...GUU-5'\n_____________|__________________|\n_____________118________________100\n |
28 -- 34 |
101 -- 107 |
-22.4618 kcal/mol |
6.92464 kcal/mol |
2.23144 kcal/mol |
16 35@LB@ | |@LB@5'-AAC...GGCGU C C AGCUG...UCG-3'@LB@ CG UGAU GGCCUGAUGG@LB@ || |||| :||||||||:@LB@ GC ACUA UCGGACUACU@LB@3'-UUU...UUUUG A CCUCU...GUU-5'@LB@ | |@LB@ 118 100@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -22.4618 kcal/mol@LB@Unfolding Energy - mRNA 6.92464 kcal/mol@LB@Unfolding Energy - sRNA 2.23144 kcal/mol@LB@@LB@Position - mRNA 17 -- 34@LB@Position - sRNA 101 -- 117@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 65 |
0.0006555 |
0.04603 |
pa0184 |
N/A |
-11.46 |
0.086208 |
64 -- 73 |
101 -- 110 |
ABC transporter ATP-binding protein |
pa2294 |
_____________63_________74\n_____________|__________|\n5'-AUC...UCGGC__________UCGGC...UCC-3'\n______________AGCCUGAUGA\n______________||||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
67 -- 73 |
101 -- 107 |
-16.8516 kcal/mol |
3.27707 kcal/mol |
2.11196 kcal/mol |
63 74@LB@ | |@LB@5'-AUC...UCGGC UCGGC...UCC-3'@LB@ AGCCUGAUGA@LB@ ||||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -11.46 kcal/mol@LB@Hybridization Energy -16.8516 kcal/mol@LB@Unfolding Energy - mRNA 3.27707 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 64 -- 73@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 101 -- 107@LB@ |
